Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12530

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12525 and A4249_RS12530 are separated by 129 nucleotidesA4249_RS12530 and A4249_RS12535 are separated by 4 nucleotides A4249_RS12525: A4249_RS12525 - M3 family metallopeptidase, at 2,511,464 to 2,513,650 _RS12525 A4249_RS12530: A4249_RS12530 - aspartate/glutamate racemase family protein, at 2,513,780 to 2,514,637 _RS12530 A4249_RS12535: A4249_RS12535 - cation diffusion facilitator family transporter, at 2,514,642 to 2,515,610 _RS12535 Position (kb) 2513 2514 2515Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2513.232 kb on + strand, within A4249_RS12525at 2513.232 kb on + strand, within A4249_RS12525at 2513.232 kb on + strand, within A4249_RS12525at 2513.232 kb on + strand, within A4249_RS12525at 2513.232 kb on + strand, within A4249_RS12525at 2513.232 kb on + strand, within A4249_RS12525at 2513.233 kb on - strand, within A4249_RS12525at 2513.233 kb on - strand, within A4249_RS12525at 2513.268 kb on + strand, within A4249_RS12525at 2513.268 kb on + strand, within A4249_RS12525at 2513.268 kb on + strand, within A4249_RS12525at 2513.268 kb on + strand, within A4249_RS12525at 2513.269 kb on - strand, within A4249_RS12525at 2513.269 kb on - strand, within A4249_RS12525at 2513.369 kb on - strand, within A4249_RS12525at 2513.454 kb on + strandat 2513.454 kb on + strandat 2513.454 kb on + strandat 2513.454 kb on + strandat 2513.454 kb on + strandat 2513.454 kb on + strandat 2513.455 kb on - strandat 2513.455 kb on - strandat 2513.455 kb on - strandat 2513.455 kb on - strandat 2513.644 kb on + strandat 2513.644 kb on + strandat 2513.645 kb on - strandat 2513.645 kb on - strandat 2513.645 kb on - strandat 2513.645 kb on - strandat 2513.645 kb on - strandat 2513.645 kb on - strandat 2513.682 kb on + strandat 2513.682 kb on + strandat 2513.683 kb on - strandat 2513.683 kb on - strandat 2513.688 kb on + strandat 2513.688 kb on + strandat 2513.688 kb on + strandat 2513.689 kb on - strandat 2513.689 kb on - strandat 2513.689 kb on - strandat 2513.689 kb on - strandat 2514.635 kb on + strandat 2514.635 kb on + strandat 2514.635 kb on + strandat 2514.635 kb on + strandat 2514.636 kb on - strandat 2514.636 kb on - strandat 2514.692 kb on + strandat 2514.692 kb on + strandat 2514.692 kb on + strandat 2514.692 kb on + strandat 2514.692 kb on + strandat 2514.693 kb on - strandat 2514.693 kb on - strandat 2514.706 kb on + strandat 2515.069 kb on + strand, within A4249_RS12535at 2515.070 kb on - strand, within A4249_RS12535at 2515.070 kb on - strand, within A4249_RS12535at 2515.070 kb on - strand, within A4249_RS12535at 2515.070 kb on - strand, within A4249_RS12535at 2515.291 kb on + strand, within A4249_RS12535at 2515.291 kb on + strand, within A4249_RS12535at 2515.292 kb on - strand, within A4249_RS12535at 2515.292 kb on - strand, within A4249_RS12535at 2515.292 kb on - strand, within A4249_RS12535at 2515.292 kb on - strand, within A4249_RS12535at 2515.385 kb on + strand, within A4249_RS12535at 2515.385 kb on + strand, within A4249_RS12535at 2515.385 kb on + strand, within A4249_RS12535at 2515.385 kb on + strand, within A4249_RS12535at 2515.385 kb on + strand, within A4249_RS12535at 2515.386 kb on - strand, within A4249_RS12535at 2515.450 kb on - strand, within A4249_RS12535at 2515.450 kb on - strand, within A4249_RS12535at 2515.483 kb on + strand, within A4249_RS12535at 2515.483 kb on + strand, within A4249_RS12535at 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.517 kb on + strandat 2515.518 kb on - strandat 2515.518 kb on - strandat 2515.518 kb on - strandat 2515.518 kb on - strandat 2515.620 kb on - strandat 2515.620 kb on - strandat 2515.621 kb on + strandat 2515.621 kb on + strandat 2515.621 kb on + strandat 2515.622 kb on - strandat 2515.622 kb on - strandat 2515.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,513,232 + A4249_RS12525 0.81 -0.6
2,513,232 + A4249_RS12525 0.81 +1.1
2,513,232 + A4249_RS12525 0.81 -2.2
2,513,232 + A4249_RS12525 0.81 +0.4
2,513,232 + A4249_RS12525 0.81 +3.2
2,513,232 + A4249_RS12525 0.81 -0.7
2,513,233 - A4249_RS12525 0.81 -1.4
2,513,233 - A4249_RS12525 0.81 +0.3
2,513,268 + A4249_RS12525 0.82 -0.9
2,513,268 + A4249_RS12525 0.82 -1.2
2,513,268 + A4249_RS12525 0.82 +0.6
2,513,268 + A4249_RS12525 0.82 -2.2
2,513,269 - A4249_RS12525 0.83 +0.9
2,513,269 - A4249_RS12525 0.83 +0.4
2,513,369 - A4249_RS12525 0.87 -0.7
2,513,454 + -2.4
2,513,454 + +0.1
2,513,454 + -0.7
2,513,454 + +0.9
2,513,454 + +0.4
2,513,454 + +0.5
2,513,455 - -0.3
2,513,455 - -0.4
2,513,455 - +0.4
2,513,455 - +2.7
2,513,644 + +1.4
2,513,644 + +0.9
2,513,645 - +0.4
2,513,645 - -1.0
2,513,645 - +1.9
2,513,645 - +0.9
2,513,645 - +0.2
2,513,645 - -1.1
2,513,682 + -0.2
2,513,682 + +0.1
2,513,683 - +0.6
2,513,683 - -1.2
2,513,688 + -1.2
2,513,688 + +0.1
2,513,688 + +1.2
2,513,689 - +0.4
2,513,689 - -1.2
2,513,689 - -0.4
2,513,689 - +1.3
2,514,635 + +0.4
2,514,635 + -2.8
2,514,635 + +1.0
2,514,635 + -1.0
2,514,636 - -1.8
2,514,636 - -0.9
2,514,692 + -0.6
2,514,692 + +0.5
2,514,692 + +0.5
2,514,692 + -1.9
2,514,692 + +0.5
2,514,693 - +0.4
2,514,693 - +2.1
2,514,706 + -1.1
2,515,069 + A4249_RS12535 0.44 -0.4
2,515,070 - A4249_RS12535 0.44 -0.3
2,515,070 - A4249_RS12535 0.44 -0.7
2,515,070 - A4249_RS12535 0.44 -0.8
2,515,070 - A4249_RS12535 0.44 -0.9
2,515,291 + A4249_RS12535 0.67 -0.4
2,515,291 + A4249_RS12535 0.67 -0.8
2,515,292 - A4249_RS12535 0.67 +0.8
2,515,292 - A4249_RS12535 0.67 -1.2
2,515,292 - A4249_RS12535 0.67 +2.1
2,515,292 - A4249_RS12535 0.67 +2.0
2,515,385 + A4249_RS12535 0.77 -0.4
2,515,385 + A4249_RS12535 0.77 -2.4
2,515,385 + A4249_RS12535 0.77 -1.1
2,515,385 + A4249_RS12535 0.77 -0.9
2,515,385 + A4249_RS12535 0.77 +1.3
2,515,386 - A4249_RS12535 0.77 -1.1
2,515,450 - A4249_RS12535 0.83 -0.4
2,515,450 - A4249_RS12535 0.83 -0.1
2,515,483 + A4249_RS12535 0.87 -0.0
2,515,483 + A4249_RS12535 0.87 +0.7
2,515,517 + -0.8
2,515,517 + -0.4
2,515,517 + -0.1
2,515,517 + +1.7
2,515,517 + -2.4
2,515,517 + +0.9
2,515,517 + +2.4
2,515,518 - -1.4
2,515,518 - -0.2
2,515,518 - +0.0
2,515,518 - -1.2
2,515,620 - -0.4
2,515,620 - -1.2
2,515,621 + +1.1
2,515,621 + +0.7
2,515,621 + -0.1
2,515,622 - +2.0
2,515,622 - -0.9
2,515,622 - +2.3

Or see this region's nucleotide sequence