Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11560

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11545 and A4249_RS11550 are separated by 3 nucleotidesA4249_RS11550 and A4249_RS11555 are separated by 25 nucleotidesA4249_RS11555 and A4249_RS11560 overlap by 4 nucleotidesA4249_RS11560 and A4249_RS11565 are separated by 104 nucleotides A4249_RS11545: A4249_RS11545 - L,D-transpeptidase family protein, at 2,323,702 to 2,325,192 _RS11545 A4249_RS11550: A4249_RS11550 - cupin domain-containing protein, at 2,325,196 to 2,325,591 _RS11550 A4249_RS11555: A4249_RS11555 - metalloregulator ArsR/SmtB family transcription factor, at 2,325,617 to 2,326,036 _RS11555 A4249_RS11560: A4249_RS11560 - peroxiredoxin, at 2,326,033 to 2,326,692 _RS11560 A4249_RS11565: A4249_RS11565 - MBL fold metallo-hydrolase, at 2,326,797 to 2,327,738 _RS11565 Position (kb) 2326 2327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2325.040 kb on + strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.094 kb on + strandat 2325.094 kb on + strandat 2325.094 kb on + strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.264 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.524 kb on + strand, within A4249_RS11550at 2325.524 kb on + strand, within A4249_RS11550at 2325.525 kb on - strand, within A4249_RS11550at 2325.571 kb on - strandat 2325.571 kb on - strandat 2325.744 kb on + strand, within A4249_RS11555at 2325.790 kb on - strand, within A4249_RS11555at 2326.052 kb on + strandat 2326.053 kb on - strandat 2326.053 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.398 kb on - strand, within A4249_RS11560at 2326.398 kb on - strand, within A4249_RS11560at 2326.398 kb on - strand, within A4249_RS11560at 2326.427 kb on + strand, within A4249_RS11560at 2326.572 kb on - strand, within A4249_RS11560at 2326.704 kb on - strandat 2326.704 kb on - strandat 2326.704 kb on - strandat 2326.727 kb on - strandat 2326.766 kb on - strandat 2326.980 kb on + strand, within A4249_RS11565at 2326.980 kb on + strand, within A4249_RS11565at 2326.980 kb on + strand, within A4249_RS11565at 2326.980 kb on + strand, within A4249_RS11565at 2326.981 kb on - strand, within A4249_RS11565at 2327.034 kb on + strand, within A4249_RS11565at 2327.035 kb on - strand, within A4249_RS11565at 2327.039 kb on - strand, within A4249_RS11565at 2327.039 kb on - strand, within A4249_RS11565at 2327.113 kb on - strand, within A4249_RS11565at 2327.113 kb on - strand, within A4249_RS11565at 2327.325 kb on + strand, within A4249_RS11565at 2327.325 kb on + strand, within A4249_RS11565at 2327.325 kb on + strand, within A4249_RS11565at 2327.326 kb on - strand, within A4249_RS11565at 2327.326 kb on - strand, within A4249_RS11565at 2327.326 kb on - strand, within A4249_RS11565at 2327.326 kb on - strand, within A4249_RS11565at 2327.425 kb on - strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.487 kb on + strand, within A4249_RS11565at 2327.488 kb on - strand, within A4249_RS11565at 2327.488 kb on - strand, within A4249_RS11565at 2327.488 kb on - strand, within A4249_RS11565at 2327.488 kb on - strand, within A4249_RS11565at 2327.488 kb on - strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.555 kb on + strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.556 kb on - strand, within A4249_RS11565at 2327.562 kb on - strand, within A4249_RS11565at 2327.562 kb on - strand, within A4249_RS11565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,325,040 + A4249_RS11545 0.90 +0.4
2,325,041 - A4249_RS11545 0.90 -0.9
2,325,041 - A4249_RS11545 0.90 +0.6
2,325,041 - A4249_RS11545 0.90 -0.4
2,325,041 - A4249_RS11545 0.90 -0.3
2,325,094 + +0.0
2,325,094 + -0.6
2,325,094 + -0.4
2,325,095 - +0.4
2,325,095 - -0.6
2,325,095 - +1.3
2,325,095 - +0.8
2,325,264 + A4249_RS11550 0.17 -0.0
2,325,290 + A4249_RS11550 0.24 -1.2
2,325,290 + A4249_RS11550 0.24 -0.6
2,325,290 + A4249_RS11550 0.24 +1.1
2,325,290 + A4249_RS11550 0.24 -0.6
2,325,290 + A4249_RS11550 0.24 -1.4
2,325,291 - A4249_RS11550 0.24 +0.2
2,325,291 - A4249_RS11550 0.24 -2.7
2,325,291 - A4249_RS11550 0.24 -0.9
2,325,291 - A4249_RS11550 0.24 +0.4
2,325,300 - A4249_RS11550 0.26 -1.1
2,325,300 - A4249_RS11550 0.26 +1.5
2,325,300 - A4249_RS11550 0.26 -1.1
2,325,524 + A4249_RS11550 0.83 -1.6
2,325,524 + A4249_RS11550 0.83 -1.7
2,325,525 - A4249_RS11550 0.83 +0.4
2,325,571 - +0.6
2,325,571 - -0.0
2,325,744 + A4249_RS11555 0.30 -2.2
2,325,790 - A4249_RS11555 0.41 -1.2
2,326,052 + -1.6
2,326,053 - -1.6
2,326,053 - -1.8
2,326,056 - -1.6
2,326,056 - +0.4
2,326,056 - -3.1
2,326,056 - -1.2
2,326,398 - A4249_RS11560 0.55 -1.6
2,326,398 - A4249_RS11560 0.55 -1.6
2,326,398 - A4249_RS11560 0.55 -1.2
2,326,427 + A4249_RS11560 0.60 -3.1
2,326,572 - A4249_RS11560 0.82 -2.8
2,326,704 - +0.6
2,326,704 - -1.6
2,326,704 - -0.6
2,326,727 - -0.6
2,326,766 - -0.6
2,326,980 + A4249_RS11565 0.19 -1.2
2,326,980 + A4249_RS11565 0.19 +0.4
2,326,980 + A4249_RS11565 0.19 -3.4
2,326,980 + A4249_RS11565 0.19 -1.4
2,326,981 - A4249_RS11565 0.20 -0.6
2,327,034 + A4249_RS11565 0.25 -0.6
2,327,035 - A4249_RS11565 0.25 +1.2
2,327,039 - A4249_RS11565 0.26 +0.4
2,327,039 - A4249_RS11565 0.26 -0.6
2,327,113 - A4249_RS11565 0.34 +0.4
2,327,113 - A4249_RS11565 0.34 +0.3
2,327,325 + A4249_RS11565 0.56 -2.0
2,327,325 + A4249_RS11565 0.56 -3.1
2,327,325 + A4249_RS11565 0.56 -3.1
2,327,326 - A4249_RS11565 0.56 -2.8
2,327,326 - A4249_RS11565 0.56 -3.2
2,327,326 - A4249_RS11565 0.56 +0.9
2,327,326 - A4249_RS11565 0.56 -2.6
2,327,425 - A4249_RS11565 0.67 -0.6
2,327,487 + A4249_RS11565 0.73 +0.4
2,327,487 + A4249_RS11565 0.73 -3.4
2,327,487 + A4249_RS11565 0.73 -2.2
2,327,487 + A4249_RS11565 0.73 -2.4
2,327,487 + A4249_RS11565 0.73 -2.3
2,327,487 + A4249_RS11565 0.73 -4.3
2,327,487 + A4249_RS11565 0.73 -2.0
2,327,488 - A4249_RS11565 0.73 -3.2
2,327,488 - A4249_RS11565 0.73 +0.4
2,327,488 - A4249_RS11565 0.73 -2.0
2,327,488 - A4249_RS11565 0.73 -2.6
2,327,488 - A4249_RS11565 0.73 -2.3
2,327,555 + A4249_RS11565 0.80 -0.6
2,327,555 + A4249_RS11565 0.80 -2.0
2,327,555 + A4249_RS11565 0.80 -2.4
2,327,555 + A4249_RS11565 0.80 +0.4
2,327,555 + A4249_RS11565 0.80 -2.0
2,327,555 + A4249_RS11565 0.80 -3.4
2,327,555 + A4249_RS11565 0.80 +0.4
2,327,555 + A4249_RS11565 0.80 -2.1
2,327,555 + A4249_RS11565 0.80 -1.8
2,327,555 + A4249_RS11565 0.80 -3.4
2,327,556 - A4249_RS11565 0.81 -1.5
2,327,556 - A4249_RS11565 0.81 -1.3
2,327,556 - A4249_RS11565 0.81 -0.6
2,327,556 - A4249_RS11565 0.81 -2.7
2,327,556 - A4249_RS11565 0.81 -1.9
2,327,556 - A4249_RS11565 0.81 -0.4
2,327,556 - A4249_RS11565 0.81 -1.7
2,327,562 - A4249_RS11565 0.81 -2.0
2,327,562 - A4249_RS11565 0.81 -1.0

Or see this region's nucleotide sequence