Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09960

Experiment: D-Glucose (C); 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09955 and A4249_RS09960 are separated by 5 nucleotidesA4249_RS09960 and A4249_RS09965 are separated by 103 nucleotides A4249_RS09955: A4249_RS09955 - alpha-amylase family glycosyl hydrolase, at 1,994,067 to 1,995,710 _RS09955 A4249_RS09960: A4249_RS09960 - LacI family DNA-binding transcriptional regulator, at 1,995,716 to 1,996,729 _RS09960 A4249_RS09965: A4249_RS09965 - glycoside hydrolase family 97 protein, at 1,996,833 to 1,998,899 _RS09965 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.814 kb on + strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.815 kb on - strand, within A4249_RS09955at 1994.816 kb on + strand, within A4249_RS09955at 1994.816 kb on + strand, within A4249_RS09955at 1994.816 kb on + strand, within A4249_RS09955at 1994.817 kb on - strand, within A4249_RS09955at 1994.817 kb on - strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.877 kb on + strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.878 kb on - strand, within A4249_RS09955at 1994.973 kb on + strand, within A4249_RS09955at 1994.973 kb on + strand, within A4249_RS09955at 1994.973 kb on + strand, within A4249_RS09955at 1994.973 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.985 kb on + strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.986 kb on - strand, within A4249_RS09955at 1994.991 kb on + strand, within A4249_RS09955at 1994.991 kb on + strand, within A4249_RS09955at 1994.992 kb on - strand, within A4249_RS09955at 1994.992 kb on - strand, within A4249_RS09955at 1994.992 kb on - strand, within A4249_RS09955at 1994.992 kb on - strand, within A4249_RS09955at 1994.999 kb on + strand, within A4249_RS09955at 1995.196 kb on - strand, within A4249_RS09955at 1995.867 kb on + strand, within A4249_RS09960at 1995.868 kb on - strand, within A4249_RS09960at 1996.245 kb on + strand, within A4249_RS09960at 1996.245 kb on + strand, within A4249_RS09960at 1996.245 kb on + strand, within A4249_RS09960at 1996.246 kb on - strand, within A4249_RS09960at 1996.246 kb on - strand, within A4249_RS09960at 1996.392 kb on + strand, within A4249_RS09960at 1996.392 kb on + strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.393 kb on - strand, within A4249_RS09960at 1996.408 kb on + strand, within A4249_RS09960at 1996.408 kb on + strand, within A4249_RS09960at 1996.408 kb on + strand, within A4249_RS09960at 1996.408 kb on + strand, within A4249_RS09960at 1996.409 kb on - strand, within A4249_RS09960at 1996.409 kb on - strand, within A4249_RS09960at 1996.409 kb on - strand, within A4249_RS09960at 1996.820 kb on + strandat 1996.995 kb on + strandat 1996.995 kb on + strandat 1996.995 kb on + strandat 1996.995 kb on + strandat 1996.995 kb on + strandat 1996.995 kb on + strandat 1996.996 kb on - strandat 1996.996 kb on - strandat 1996.996 kb on - strandat 1996.996 kb on - strandat 1997.167 kb on - strand, within A4249_RS09965at 1997.167 kb on - strand, within A4249_RS09965at 1997.167 kb on - strand, within A4249_RS09965at 1997.167 kb on - strand, within A4249_RS09965at 1997.187 kb on + strand, within A4249_RS09965at 1997.188 kb on - strand, within A4249_RS09965at 1997.188 kb on - strand, within A4249_RS09965at 1997.238 kb on + strand, within A4249_RS09965at 1997.238 kb on + strand, within A4249_RS09965at 1997.239 kb on - strand, within A4249_RS09965at 1997.239 kb on - strand, within A4249_RS09965at 1997.251 kb on + strand, within A4249_RS09965at 1997.251 kb on + strand, within A4249_RS09965at 1997.252 kb on - strand, within A4249_RS09965at 1997.252 kb on - strand, within A4249_RS09965at 1997.252 kb on - strand, within A4249_RS09965at 1997.262 kb on + strand, within A4249_RS09965at 1997.263 kb on - strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.385 kb on + strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.386 kb on - strand, within A4249_RS09965at 1997.391 kb on + strand, within A4249_RS09965at 1997.391 kb on + strand, within A4249_RS09965at 1997.391 kb on + strand, within A4249_RS09965at 1997.391 kb on + strand, within A4249_RS09965at 1997.392 kb on - strand, within A4249_RS09965at 1997.496 kb on + strand, within A4249_RS09965at 1997.496 kb on + strand, within A4249_RS09965at 1997.496 kb on + strand, within A4249_RS09965at 1997.575 kb on + strand, within A4249_RS09965at 1997.576 kb on - strand, within A4249_RS09965at 1997.668 kb on + strand, within A4249_RS09965at 1997.669 kb on - strand, within A4249_RS09965at 1997.669 kb on - strand, within A4249_RS09965at 1997.669 kb on - strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.718 kb on + strand, within A4249_RS09965at 1997.719 kb on - strand, within A4249_RS09965at 1997.719 kb on - strand, within A4249_RS09965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
remove
1,994,814 + A4249_RS09955 0.45 -1.0
1,994,814 + A4249_RS09955 0.45 -3.5
1,994,814 + A4249_RS09955 0.45 -2.7
1,994,814 + A4249_RS09955 0.45 -1.2
1,994,814 + A4249_RS09955 0.45 -0.6
1,994,814 + A4249_RS09955 0.45 +0.4
1,994,814 + A4249_RS09955 0.45 -1.5
1,994,814 + A4249_RS09955 0.45 -2.5
1,994,814 + A4249_RS09955 0.45 -1.5
1,994,814 + A4249_RS09955 0.45 -0.2
1,994,814 + A4249_RS09955 0.45 -0.7
1,994,814 + A4249_RS09955 0.45 -0.9
1,994,814 + A4249_RS09955 0.45 -1.7
1,994,814 + A4249_RS09955 0.45 -0.6
1,994,814 + A4249_RS09955 0.45 -0.8
1,994,815 - A4249_RS09955 0.45 -1.3
1,994,815 - A4249_RS09955 0.45 -0.4
1,994,815 - A4249_RS09955 0.45 -0.8
1,994,815 - A4249_RS09955 0.45 -0.6
1,994,815 - A4249_RS09955 0.45 -0.0
1,994,815 - A4249_RS09955 0.45 -1.0
1,994,815 - A4249_RS09955 0.45 -1.3
1,994,815 - A4249_RS09955 0.45 -0.7
1,994,815 - A4249_RS09955 0.45 -1.5
1,994,815 - A4249_RS09955 0.45 -0.3
1,994,815 - A4249_RS09955 0.45 -0.5
1,994,815 - A4249_RS09955 0.45 -1.4
1,994,815 - A4249_RS09955 0.45 -0.8
1,994,815 - A4249_RS09955 0.45 -1.5
1,994,815 - A4249_RS09955 0.45 -2.1
1,994,816 + A4249_RS09955 0.46 -1.7
1,994,816 + A4249_RS09955 0.46 -1.3
1,994,816 + A4249_RS09955 0.46 -0.9
1,994,817 - A4249_RS09955 0.46 -1.1
1,994,817 - A4249_RS09955 0.46 -1.9
1,994,877 + A4249_RS09955 0.49 -1.9
1,994,877 + A4249_RS09955 0.49 -0.6
1,994,877 + A4249_RS09955 0.49 -0.2
1,994,877 + A4249_RS09955 0.49 -0.7
1,994,877 + A4249_RS09955 0.49 -0.9
1,994,877 + A4249_RS09955 0.49 +0.2
1,994,877 + A4249_RS09955 0.49 -1.5
1,994,877 + A4249_RS09955 0.49 -0.5
1,994,877 + A4249_RS09955 0.49 -0.9
1,994,877 + A4249_RS09955 0.49 -1.6
1,994,877 + A4249_RS09955 0.49 -0.7
1,994,877 + A4249_RS09955 0.49 +1.2
1,994,877 + A4249_RS09955 0.49 -2.2
1,994,878 - A4249_RS09955 0.49 -1.1
1,994,878 - A4249_RS09955 0.49 -0.3
1,994,878 - A4249_RS09955 0.49 -1.5
1,994,878 - A4249_RS09955 0.49 -0.1
1,994,878 - A4249_RS09955 0.49 -0.5
1,994,878 - A4249_RS09955 0.49 -0.7
1,994,878 - A4249_RS09955 0.49 -2.1
1,994,878 - A4249_RS09955 0.49 -3.3
1,994,878 - A4249_RS09955 0.49 -1.4
1,994,878 - A4249_RS09955 0.49 -1.0
1,994,878 - A4249_RS09955 0.49 -1.8
1,994,878 - A4249_RS09955 0.49 -1.3
1,994,878 - A4249_RS09955 0.49 -1.4
1,994,878 - A4249_RS09955 0.49 -2.5
1,994,878 - A4249_RS09955 0.49 -0.9
1,994,878 - A4249_RS09955 0.49 -1.2
1,994,878 - A4249_RS09955 0.49 -1.2
1,994,878 - A4249_RS09955 0.49 +0.0
1,994,973 + A4249_RS09955 0.55 -2.0
1,994,973 + A4249_RS09955 0.55 -0.6
1,994,973 + A4249_RS09955 0.55 -1.4
1,994,973 + A4249_RS09955 0.55 +0.5
1,994,985 + A4249_RS09955 0.56 +1.1
1,994,985 + A4249_RS09955 0.56 -1.7
1,994,985 + A4249_RS09955 0.56 +1.9
1,994,985 + A4249_RS09955 0.56 -1.1
1,994,985 + A4249_RS09955 0.56 -1.0
1,994,985 + A4249_RS09955 0.56 -1.6
1,994,986 - A4249_RS09955 0.56 -3.0
1,994,986 - A4249_RS09955 0.56 +0.1
1,994,986 - A4249_RS09955 0.56 -0.7
1,994,986 - A4249_RS09955 0.56 -0.4
1,994,986 - A4249_RS09955 0.56 -2.9
1,994,986 - A4249_RS09955 0.56 -0.9
1,994,986 - A4249_RS09955 0.56 -1.7
1,994,991 + A4249_RS09955 0.56 -0.5
1,994,991 + A4249_RS09955 0.56 -3.8
1,994,992 - A4249_RS09955 0.56 -1.2
1,994,992 - A4249_RS09955 0.56 -0.9
1,994,992 - A4249_RS09955 0.56 -0.6
1,994,992 - A4249_RS09955 0.56 +1.6
1,994,999 + A4249_RS09955 0.57 -2.2
1,995,196 - A4249_RS09955 0.69 -0.0
1,995,867 + A4249_RS09960 0.15 -0.6
1,995,868 - A4249_RS09960 0.15 +0.6
1,996,245 + A4249_RS09960 0.52 -1.3
1,996,245 + A4249_RS09960 0.52 +1.9
1,996,245 + A4249_RS09960 0.52 -0.7
1,996,246 - A4249_RS09960 0.52 -0.7
1,996,246 - A4249_RS09960 0.52 -1.5
1,996,392 + A4249_RS09960 0.67 -0.7
1,996,392 + A4249_RS09960 0.67 -0.3
1,996,393 - A4249_RS09960 0.67 -0.4
1,996,393 - A4249_RS09960 0.67 -2.5
1,996,393 - A4249_RS09960 0.67 +0.3
1,996,393 - A4249_RS09960 0.67 -0.0
1,996,393 - A4249_RS09960 0.67 +0.3
1,996,393 - A4249_RS09960 0.67 +0.3
1,996,408 + A4249_RS09960 0.68 +1.9
1,996,408 + A4249_RS09960 0.68 +0.3
1,996,408 + A4249_RS09960 0.68 +0.3
1,996,408 + A4249_RS09960 0.68 +0.3
1,996,409 - A4249_RS09960 0.68 -0.5
1,996,409 - A4249_RS09960 0.68 -0.1
1,996,409 - A4249_RS09960 0.68 -1.1
1,996,820 + -0.8
1,996,995 + -0.0
1,996,995 + -0.9
1,996,995 + -1.4
1,996,995 + -0.4
1,996,995 + -1.6
1,996,995 + -1.8
1,996,996 - -0.3
1,996,996 - -1.1
1,996,996 - -0.4
1,996,996 - +0.3
1,997,167 - A4249_RS09965 0.16 -0.4
1,997,167 - A4249_RS09965 0.16 -0.6
1,997,167 - A4249_RS09965 0.16 -1.1
1,997,167 - A4249_RS09965 0.16 -0.8
1,997,187 + A4249_RS09965 0.17 -0.9
1,997,188 - A4249_RS09965 0.17 -1.9
1,997,188 - A4249_RS09965 0.17 -0.2
1,997,238 + A4249_RS09965 0.20 -0.7
1,997,238 + A4249_RS09965 0.20 -0.5
1,997,239 - A4249_RS09965 0.20 -0.0
1,997,239 - A4249_RS09965 0.20 -1.6
1,997,251 + A4249_RS09965 0.20 -1.2
1,997,251 + A4249_RS09965 0.20 +1.5
1,997,252 - A4249_RS09965 0.20 -1.2
1,997,252 - A4249_RS09965 0.20 -0.8
1,997,252 - A4249_RS09965 0.20 +0.2
1,997,262 + A4249_RS09965 0.21 -1.1
1,997,263 - A4249_RS09965 0.21 -1.0
1,997,385 + A4249_RS09965 0.27 +0.5
1,997,385 + A4249_RS09965 0.27 -1.7
1,997,385 + A4249_RS09965 0.27 -0.9
1,997,385 + A4249_RS09965 0.27 +0.6
1,997,385 + A4249_RS09965 0.27 -0.7
1,997,385 + A4249_RS09965 0.27 -0.1
1,997,385 + A4249_RS09965 0.27 -1.3
1,997,385 + A4249_RS09965 0.27 -0.7
1,997,385 + A4249_RS09965 0.27 -0.9
1,997,386 - A4249_RS09965 0.27 -0.7
1,997,386 - A4249_RS09965 0.27 -0.6
1,997,386 - A4249_RS09965 0.27 -1.3
1,997,386 - A4249_RS09965 0.27 -0.7
1,997,386 - A4249_RS09965 0.27 -3.0
1,997,386 - A4249_RS09965 0.27 -2.6
1,997,386 - A4249_RS09965 0.27 -0.8
1,997,391 + A4249_RS09965 0.27 -1.2
1,997,391 + A4249_RS09965 0.27 -0.7
1,997,391 + A4249_RS09965 0.27 -1.3
1,997,391 + A4249_RS09965 0.27 -1.0
1,997,392 - A4249_RS09965 0.27 -0.8
1,997,496 + A4249_RS09965 0.32 +0.5
1,997,496 + A4249_RS09965 0.32 -0.7
1,997,496 + A4249_RS09965 0.32 -0.6
1,997,575 + A4249_RS09965 0.36 -0.9
1,997,576 - A4249_RS09965 0.36 +1.3
1,997,668 + A4249_RS09965 0.40 -0.0
1,997,669 - A4249_RS09965 0.40 +1.2
1,997,669 - A4249_RS09965 0.40 +0.3
1,997,669 - A4249_RS09965 0.40 -2.3
1,997,718 + A4249_RS09965 0.43 -1.1
1,997,718 + A4249_RS09965 0.43 -0.2
1,997,718 + A4249_RS09965 0.43 -2.3
1,997,718 + A4249_RS09965 0.43 -0.9
1,997,718 + A4249_RS09965 0.43 -0.5
1,997,718 + A4249_RS09965 0.43 -3.0
1,997,718 + A4249_RS09965 0.43 -0.8
1,997,719 - A4249_RS09965 0.43 -1.5
1,997,719 - A4249_RS09965 0.43 -0.6

Or see this region's nucleotide sequence