Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09870

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09860 and A4249_RS09865 are separated by 13 nucleotidesA4249_RS09865 and A4249_RS09870 overlap by 4 nucleotidesA4249_RS09870 and A4249_RS09875 are separated by 186 nucleotides A4249_RS09860: A4249_RS09860 - SAM-dependent methyltransferase, at 1,963,451 to 1,964,536 _RS09860 A4249_RS09865: A4249_RS09865 - peptidoglycan editing factor PgeF, at 1,964,550 to 1,965,320 _RS09865 A4249_RS09870: A4249_RS09870 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,965,317 to 1,966,216 _RS09870 A4249_RS09875: A4249_RS09875 - cell division protein FtsZ, at 1,966,403 to 1,967,989 _RS09875 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1964.537 kb on + strandat 1964.537 kb on + strandat 1964.537 kb on + strandat 1964.537 kb on + strandat 1964.537 kb on + strandat 1964.538 kb on - strandat 1964.538 kb on - strandat 1964.538 kb on - strandat 1964.538 kb on - strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.539 kb on + strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.540 kb on - strandat 1964.646 kb on + strand, within A4249_RS09865at 1964.646 kb on + strand, within A4249_RS09865at 1964.646 kb on + strand, within A4249_RS09865at 1964.646 kb on + strand, within A4249_RS09865at 1964.646 kb on + strand, within A4249_RS09865at 1964.647 kb on - strand, within A4249_RS09865at 1964.647 kb on - strand, within A4249_RS09865at 1964.647 kb on - strand, within A4249_RS09865at 1964.760 kb on + strand, within A4249_RS09865at 1964.996 kb on - strand, within A4249_RS09865at 1965.054 kb on + strand, within A4249_RS09865at 1965.054 kb on + strand, within A4249_RS09865at 1965.055 kb on - strand, within A4249_RS09865at 1965.055 kb on - strand, within A4249_RS09865at 1965.055 kb on - strand, within A4249_RS09865at 1965.055 kb on - strand, within A4249_RS09865at 1965.055 kb on - strand, within A4249_RS09865at 1965.249 kb on + strandat 1965.250 kb on - strandat 1965.318 kb on + strandat 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.280 kb on - strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.404 kb on + strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strandat 1966.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,964,537 + -0.2
1,964,537 + -1.0
1,964,537 + -0.7
1,964,537 + -0.0
1,964,537 + -0.7
1,964,538 - +1.1
1,964,538 - +0.6
1,964,538 - +0.8
1,964,538 - +0.3
1,964,539 + +0.3
1,964,539 + -1.3
1,964,539 + +0.8
1,964,539 + -0.3
1,964,539 + +0.4
1,964,539 + +0.5
1,964,539 + -1.7
1,964,539 + -0.9
1,964,539 + +0.5
1,964,539 + -1.5
1,964,539 + -1.9
1,964,539 + +1.3
1,964,540 - +0.9
1,964,540 - -2.3
1,964,540 - -2.3
1,964,540 - -0.0
1,964,540 - -0.6
1,964,540 - -0.5
1,964,540 - +0.1
1,964,540 - -1.5
1,964,540 - +1.6
1,964,540 - +0.3
1,964,540 - -0.8
1,964,540 - +0.2
1,964,540 - +1.2
1,964,540 - -0.3
1,964,540 - -0.1
1,964,540 - +1.0
1,964,540 - -0.5
1,964,540 - +2.1
1,964,646 + A4249_RS09865 0.12 -0.2
1,964,646 + A4249_RS09865 0.12 +0.7
1,964,646 + A4249_RS09865 0.12 +1.3
1,964,646 + A4249_RS09865 0.12 -0.9
1,964,646 + A4249_RS09865 0.12 +0.9
1,964,647 - A4249_RS09865 0.13 -1.5
1,964,647 - A4249_RS09865 0.13 -0.5
1,964,647 - A4249_RS09865 0.13 +0.3
1,964,760 + A4249_RS09865 0.27 -0.2
1,964,996 - A4249_RS09865 0.58 +1.3
1,965,054 + A4249_RS09865 0.65 +0.5
1,965,054 + A4249_RS09865 0.65 +4.0
1,965,055 - A4249_RS09865 0.65 -0.6
1,965,055 - A4249_RS09865 0.65 +0.1
1,965,055 - A4249_RS09865 0.65 -1.3
1,965,055 - A4249_RS09865 0.65 -1.7
1,965,055 - A4249_RS09865 0.65 -0.9
1,965,249 + +0.3
1,965,250 - +0.7
1,965,318 + +0.7
1,966,280 - -0.7
1,966,280 - -0.2
1,966,280 - -0.7
1,966,280 - -0.5
1,966,404 + +0.0
1,966,404 + -0.9
1,966,404 + +4.4
1,966,404 + -0.7
1,966,405 - +0.1
1,966,405 - -0.3
1,966,405 - +1.7
1,966,405 - -0.8
1,966,405 - -1.2
1,966,405 - -0.9
1,966,405 - -1.0
1,966,405 - -0.5
1,966,405 - +0.4
1,966,405 - -0.9
1,966,405 - -1.3
1,966,405 - -0.1
1,966,405 - -0.3
1,966,405 - -1.5

Or see this region's nucleotide sequence