Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09745

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09740 and A4249_RS09745 are separated by 53 nucleotidesA4249_RS09745 and A4249_RS09750 are separated by 20 nucleotides A4249_RS09740: A4249_RS09740 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 1,940,275 to 1,941,261 _RS09740 A4249_RS09745: A4249_RS09745 - response regulator, at 1,941,315 to 1,941,713 _RS09745 A4249_RS09750: A4249_RS09750 - CHASE3 domain-containing protein, at 1,941,734 to 1,943,260 _RS09750 Position (kb) 1941 1942Strain fitness (log2 ratio) -1 0 1 2 3 4at 1940.472 kb on + strand, within A4249_RS09740at 1940.501 kb on + strand, within A4249_RS09740at 1940.501 kb on + strand, within A4249_RS09740at 1940.501 kb on + strand, within A4249_RS09740at 1940.502 kb on - strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.507 kb on + strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.508 kb on - strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.663 kb on + strand, within A4249_RS09740at 1940.664 kb on - strand, within A4249_RS09740at 1940.664 kb on - strand, within A4249_RS09740at 1940.664 kb on - strand, within A4249_RS09740at 1940.664 kb on - strand, within A4249_RS09740at 1940.664 kb on - strand, within A4249_RS09740at 1940.702 kb on + strand, within A4249_RS09740at 1940.702 kb on + strand, within A4249_RS09740at 1940.702 kb on + strand, within A4249_RS09740at 1940.702 kb on + strand, within A4249_RS09740at 1940.702 kb on + strand, within A4249_RS09740at 1940.703 kb on - strand, within A4249_RS09740at 1940.703 kb on - strand, within A4249_RS09740at 1940.703 kb on - strand, within A4249_RS09740at 1940.703 kb on - strand, within A4249_RS09740at 1940.703 kb on - strand, within A4249_RS09740at 1941.002 kb on + strand, within A4249_RS09740at 1941.002 kb on + strand, within A4249_RS09740at 1941.002 kb on + strand, within A4249_RS09740at 1941.002 kb on + strand, within A4249_RS09740at 1941.003 kb on - strand, within A4249_RS09740at 1941.003 kb on - strand, within A4249_RS09740at 1941.003 kb on - strand, within A4249_RS09740at 1941.003 kb on - strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.065 kb on + strand, within A4249_RS09740at 1941.066 kb on - strand, within A4249_RS09740at 1941.066 kb on - strand, within A4249_RS09740at 1941.107 kb on - strand, within A4249_RS09740at 1941.107 kb on - strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.135 kb on + strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.136 kb on - strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.137 kb on + strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.138 kb on - strand, within A4249_RS09740at 1941.281 kb on + strandat 1941.282 kb on - strandat 1941.282 kb on - strandat 1941.282 kb on - strandat 1941.282 kb on - strandat 1941.282 kb on - strandat 1941.294 kb on + strandat 1941.295 kb on - strandat 1941.295 kb on - strandat 1941.295 kb on - strandat 1941.385 kb on + strand, within A4249_RS09745at 1941.385 kb on + strand, within A4249_RS09745at 1941.386 kb on - strand, within A4249_RS09745at 1941.386 kb on - strand, within A4249_RS09745at 1941.386 kb on - strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.406 kb on + strand, within A4249_RS09745at 1941.407 kb on - strand, within A4249_RS09745at 1941.428 kb on - strand, within A4249_RS09745at 1941.428 kb on - strand, within A4249_RS09745at 1941.536 kb on + strand, within A4249_RS09745at 1941.536 kb on + strand, within A4249_RS09745at 1941.537 kb on - strand, within A4249_RS09745at 1941.537 kb on - strand, within A4249_RS09745at 1941.604 kb on + strand, within A4249_RS09745at 1941.604 kb on + strand, within A4249_RS09745at 1941.604 kb on + strand, within A4249_RS09745at 1941.604 kb on + strand, within A4249_RS09745at 1941.604 kb on + strand, within A4249_RS09745at 1941.605 kb on - strand, within A4249_RS09745at 1942.044 kb on + strand, within A4249_RS09750at 1942.044 kb on + strand, within A4249_RS09750at 1942.045 kb on - strand, within A4249_RS09750at 1942.045 kb on - strand, within A4249_RS09750at 1942.168 kb on + strand, within A4249_RS09750at 1942.168 kb on + strand, within A4249_RS09750at 1942.168 kb on + strand, within A4249_RS09750at 1942.168 kb on + strand, within A4249_RS09750at 1942.169 kb on - strand, within A4249_RS09750at 1942.171 kb on + strand, within A4249_RS09750at 1942.171 kb on + strand, within A4249_RS09750at 1942.171 kb on + strand, within A4249_RS09750at 1942.177 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.468 kb on + strand, within A4249_RS09750at 1942.468 kb on + strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.594 kb on - strand, within A4249_RS09750at 1942.594 kb on - strand, within A4249_RS09750

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,940,472 + A4249_RS09740 0.20 +3.4
1,940,501 + A4249_RS09740 0.23 +3.5
1,940,501 + A4249_RS09740 0.23 +3.3
1,940,501 + A4249_RS09740 0.23 +3.4
1,940,502 - A4249_RS09740 0.23 +2.8
1,940,507 + A4249_RS09740 0.24 +2.7
1,940,507 + A4249_RS09740 0.24 +3.5
1,940,507 + A4249_RS09740 0.24 +3.4
1,940,507 + A4249_RS09740 0.24 +3.3
1,940,507 + A4249_RS09740 0.24 +3.7
1,940,507 + A4249_RS09740 0.24 +3.5
1,940,507 + A4249_RS09740 0.24 +2.0
1,940,508 - A4249_RS09740 0.24 +3.2
1,940,508 - A4249_RS09740 0.24 +2.9
1,940,508 - A4249_RS09740 0.24 +2.8
1,940,508 - A4249_RS09740 0.24 +0.3
1,940,508 - A4249_RS09740 0.24 +3.7
1,940,508 - A4249_RS09740 0.24 +3.7
1,940,508 - A4249_RS09740 0.24 +3.2
1,940,508 - A4249_RS09740 0.24 +2.9
1,940,663 + A4249_RS09740 0.39 +2.9
1,940,663 + A4249_RS09740 0.39 +3.6
1,940,663 + A4249_RS09740 0.39 +3.5
1,940,663 + A4249_RS09740 0.39 +3.4
1,940,663 + A4249_RS09740 0.39 +3.3
1,940,663 + A4249_RS09740 0.39 +2.9
1,940,663 + A4249_RS09740 0.39 +3.4
1,940,664 - A4249_RS09740 0.39 +3.1
1,940,664 - A4249_RS09740 0.39 +3.1
1,940,664 - A4249_RS09740 0.39 +3.1
1,940,664 - A4249_RS09740 0.39 +3.1
1,940,664 - A4249_RS09740 0.39 +2.8
1,940,702 + A4249_RS09740 0.43 +3.1
1,940,702 + A4249_RS09740 0.43 +3.4
1,940,702 + A4249_RS09740 0.43 +3.3
1,940,702 + A4249_RS09740 0.43 +3.5
1,940,702 + A4249_RS09740 0.43 +2.6
1,940,703 - A4249_RS09740 0.43 +3.2
1,940,703 - A4249_RS09740 0.43 +3.3
1,940,703 - A4249_RS09740 0.43 +3.0
1,940,703 - A4249_RS09740 0.43 +2.8
1,940,703 - A4249_RS09740 0.43 +3.1
1,941,002 + A4249_RS09740 0.74 +3.2
1,941,002 + A4249_RS09740 0.74 +3.1
1,941,002 + A4249_RS09740 0.74 +2.5
1,941,002 + A4249_RS09740 0.74 +3.9
1,941,003 - A4249_RS09740 0.74 +3.4
1,941,003 - A4249_RS09740 0.74 +3.4
1,941,003 - A4249_RS09740 0.74 +3.1
1,941,003 - A4249_RS09740 0.74 +2.9
1,941,065 + A4249_RS09740 0.80 +3.3
1,941,065 + A4249_RS09740 0.80 +3.2
1,941,065 + A4249_RS09740 0.80 +3.5
1,941,065 + A4249_RS09740 0.80 +3.5
1,941,065 + A4249_RS09740 0.80 +3.3
1,941,065 + A4249_RS09740 0.80 +3.4
1,941,066 - A4249_RS09740 0.80 +3.4
1,941,066 - A4249_RS09740 0.80 +3.1
1,941,107 - A4249_RS09740 0.84 +3.5
1,941,107 - A4249_RS09740 0.84 +3.1
1,941,135 + A4249_RS09740 0.87 +3.4
1,941,135 + A4249_RS09740 0.87 +3.2
1,941,135 + A4249_RS09740 0.87 +3.9
1,941,135 + A4249_RS09740 0.87 +3.5
1,941,135 + A4249_RS09740 0.87 +3.2
1,941,135 + A4249_RS09740 0.87 +3.4
1,941,135 + A4249_RS09740 0.87 +3.6
1,941,136 - A4249_RS09740 0.87 +3.4
1,941,136 - A4249_RS09740 0.87 +3.5
1,941,136 - A4249_RS09740 0.87 +3.2
1,941,136 - A4249_RS09740 0.87 +3.0
1,941,136 - A4249_RS09740 0.87 +3.6
1,941,136 - A4249_RS09740 0.87 +3.2
1,941,136 - A4249_RS09740 0.87 +3.5
1,941,136 - A4249_RS09740 0.87 +0.3
1,941,136 - A4249_RS09740 0.87 +3.3
1,941,136 - A4249_RS09740 0.87 +3.3
1,941,137 + A4249_RS09740 0.87 +3.2
1,941,137 + A4249_RS09740 0.87 +2.8
1,941,137 + A4249_RS09740 0.87 +3.5
1,941,137 + A4249_RS09740 0.87 +3.4
1,941,137 + A4249_RS09740 0.87 +3.1
1,941,137 + A4249_RS09740 0.87 +3.3
1,941,137 + A4249_RS09740 0.87 +3.3
1,941,137 + A4249_RS09740 0.87 +3.7
1,941,137 + A4249_RS09740 0.87 +3.6
1,941,137 + A4249_RS09740 0.87 +3.5
1,941,137 + A4249_RS09740 0.87 +3.3
1,941,137 + A4249_RS09740 0.87 +3.5
1,941,137 + A4249_RS09740 0.87 +3.4
1,941,138 - A4249_RS09740 0.87 +3.1
1,941,138 - A4249_RS09740 0.87 +2.5
1,941,138 - A4249_RS09740 0.87 +3.1
1,941,138 - A4249_RS09740 0.87 +3.4
1,941,138 - A4249_RS09740 0.87 +3.3
1,941,138 - A4249_RS09740 0.87 +3.2
1,941,138 - A4249_RS09740 0.87 +2.4
1,941,138 - A4249_RS09740 0.87 +3.1
1,941,138 - A4249_RS09740 0.87 +3.2
1,941,138 - A4249_RS09740 0.87 +3.2
1,941,138 - A4249_RS09740 0.87 +2.9
1,941,138 - A4249_RS09740 0.87 +3.4
1,941,138 - A4249_RS09740 0.87 +3.1
1,941,138 - A4249_RS09740 0.87 +3.5
1,941,138 - A4249_RS09740 0.87 +2.6
1,941,138 - A4249_RS09740 0.87 +3.7
1,941,138 - A4249_RS09740 0.87 +2.9
1,941,281 + +3.4
1,941,282 - +3.1
1,941,282 - +3.1
1,941,282 - +3.4
1,941,282 - +3.3
1,941,282 - +3.2
1,941,294 + +2.3
1,941,295 - +1.9
1,941,295 - +3.3
1,941,295 - +2.2
1,941,385 + A4249_RS09745 0.18 +3.0
1,941,385 + A4249_RS09745 0.18 +3.5
1,941,386 - A4249_RS09745 0.18 +3.1
1,941,386 - A4249_RS09745 0.18 +3.1
1,941,386 - A4249_RS09745 0.18 +4.0
1,941,406 + A4249_RS09745 0.23 +3.4
1,941,406 + A4249_RS09745 0.23 +2.9
1,941,406 + A4249_RS09745 0.23 +3.2
1,941,406 + A4249_RS09745 0.23 +2.7
1,941,406 + A4249_RS09745 0.23 +3.2
1,941,406 + A4249_RS09745 0.23 +2.0
1,941,407 - A4249_RS09745 0.23 +3.2
1,941,428 - A4249_RS09745 0.28 +2.7
1,941,428 - A4249_RS09745 0.28 +2.0
1,941,536 + A4249_RS09745 0.55 +3.3
1,941,536 + A4249_RS09745 0.55 +3.2
1,941,537 - A4249_RS09745 0.56 +2.4
1,941,537 - A4249_RS09745 0.56 +2.3
1,941,604 + A4249_RS09745 0.72 +2.5
1,941,604 + A4249_RS09745 0.72 +3.2
1,941,604 + A4249_RS09745 0.72 +3.5
1,941,604 + A4249_RS09745 0.72 +2.8
1,941,604 + A4249_RS09745 0.72 +2.8
1,941,605 - A4249_RS09745 0.73 +3.1
1,942,044 + A4249_RS09750 0.20 +2.5
1,942,044 + A4249_RS09750 0.20 +3.2
1,942,045 - A4249_RS09750 0.20 +2.9
1,942,045 - A4249_RS09750 0.20 +3.4
1,942,168 + A4249_RS09750 0.28 +3.7
1,942,168 + A4249_RS09750 0.28 +3.3
1,942,168 + A4249_RS09750 0.28 +2.9
1,942,168 + A4249_RS09750 0.28 +2.7
1,942,169 - A4249_RS09750 0.28 +2.7
1,942,171 + A4249_RS09750 0.29 +3.0
1,942,171 + A4249_RS09750 0.29 +3.1
1,942,171 + A4249_RS09750 0.29 +3.0
1,942,177 + A4249_RS09750 0.29 +3.3
1,942,374 + A4249_RS09750 0.42 +3.2
1,942,374 + A4249_RS09750 0.42 +2.1
1,942,374 + A4249_RS09750 0.42 +3.1
1,942,374 + A4249_RS09750 0.42 +2.0
1,942,374 + A4249_RS09750 0.42 +2.8
1,942,375 - A4249_RS09750 0.42 +2.6
1,942,375 - A4249_RS09750 0.42 +3.0
1,942,375 - A4249_RS09750 0.42 +2.5
1,942,422 + A4249_RS09750 0.45 +2.8
1,942,422 + A4249_RS09750 0.45 +3.1
1,942,422 + A4249_RS09750 0.45 +3.0
1,942,422 + A4249_RS09750 0.45 +3.4
1,942,422 + A4249_RS09750 0.45 +3.1
1,942,423 - A4249_RS09750 0.45 +2.8
1,942,423 - A4249_RS09750 0.45 +3.5
1,942,423 - A4249_RS09750 0.45 +2.7
1,942,423 - A4249_RS09750 0.45 +2.8
1,942,423 - A4249_RS09750 0.45 +2.7
1,942,468 + A4249_RS09750 0.48 +2.5
1,942,468 + A4249_RS09750 0.48 +3.2
1,942,469 - A4249_RS09750 0.48 +2.6
1,942,469 - A4249_RS09750 0.48 +3.0
1,942,469 - A4249_RS09750 0.48 +2.9
1,942,469 - A4249_RS09750 0.48 +4.4
1,942,469 - A4249_RS09750 0.48 +3.4
1,942,470 + A4249_RS09750 0.48 +3.0
1,942,470 + A4249_RS09750 0.48 +2.6
1,942,470 + A4249_RS09750 0.48 +3.1
1,942,470 + A4249_RS09750 0.48 +3.0
1,942,471 - A4249_RS09750 0.48 +2.8
1,942,471 - A4249_RS09750 0.48 +2.5
1,942,471 - A4249_RS09750 0.48 +2.8
1,942,471 - A4249_RS09750 0.48 +3.0
1,942,471 - A4249_RS09750 0.48 +2.8
1,942,471 - A4249_RS09750 0.48 +2.1
1,942,471 - A4249_RS09750 0.48 +2.9
1,942,593 + A4249_RS09750 0.56 +3.6
1,942,593 + A4249_RS09750 0.56 +4.2
1,942,593 + A4249_RS09750 0.56 +3.5
1,942,593 + A4249_RS09750 0.56 +2.6
1,942,593 + A4249_RS09750 0.56 +2.3
1,942,593 + A4249_RS09750 0.56 +3.3
1,942,594 - A4249_RS09750 0.56 +2.6
1,942,594 - A4249_RS09750 0.56 +3.6

Or see this region's nucleotide sequence