Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09645

Experiment: D-Glucose (C); 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09635 and A4249_RS09640 are separated by 140 nucleotidesA4249_RS09640 and A4249_RS09645 are separated by 11 nucleotidesA4249_RS09645 and A4249_RS09650 are separated by 49 nucleotides A4249_RS09635: A4249_RS09635 - flagellar basal body L-ring protein FlgH, at 1,921,384 to 1,922,106 _RS09635 A4249_RS09640: A4249_RS09640 - hypothetical protein, at 1,922,247 to 1,922,675 _RS09640 A4249_RS09645: A4249_RS09645 - hypothetical protein, at 1,922,687 to 1,923,187 _RS09645 A4249_RS09650: A4249_RS09650 - DUF885 domain-containing protein, at 1,923,237 to 1,925,024 _RS09650 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1922.026 kb on + strand, within A4249_RS09635at 1922.257 kb on + strandat 1922.257 kb on + strandat 1922.258 kb on - strandat 1922.258 kb on - strandat 1922.322 kb on + strand, within A4249_RS09640at 1922.323 kb on - strand, within A4249_RS09640at 1922.323 kb on - strand, within A4249_RS09640at 1922.430 kb on + strand, within A4249_RS09640at 1922.431 kb on - strand, within A4249_RS09640at 1922.462 kb on + strand, within A4249_RS09640at 1922.462 kb on + strand, within A4249_RS09640at 1922.462 kb on + strand, within A4249_RS09640at 1922.463 kb on - strand, within A4249_RS09640at 1922.463 kb on - strand, within A4249_RS09640at 1922.703 kb on + strandat 1922.856 kb on - strand, within A4249_RS09645at 1922.960 kb on + strand, within A4249_RS09645at 1922.960 kb on + strand, within A4249_RS09645at 1922.961 kb on - strand, within A4249_RS09645at 1923.128 kb on + strand, within A4249_RS09645at 1923.128 kb on + strand, within A4249_RS09645at 1923.202 kb on + strandat 1923.202 kb on + strandat 1923.202 kb on + strandat 1923.203 kb on - strandat 1923.203 kb on - strandat 1923.203 kb on - strandat 1923.203 kb on - strandat 1923.249 kb on + strandat 1923.249 kb on + strandat 1923.250 kb on - strandat 1923.250 kb on - strandat 1923.250 kb on - strandat 1923.250 kb on - strandat 1923.369 kb on + strandat 1923.369 kb on + strandat 1923.370 kb on - strandat 1923.370 kb on - strandat 1923.370 kb on - strandat 1923.378 kb on + strandat 1923.378 kb on + strandat 1923.378 kb on + strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.379 kb on - strandat 1923.570 kb on + strand, within A4249_RS09650at 1923.570 kb on + strand, within A4249_RS09650at 1923.570 kb on + strand, within A4249_RS09650at 1923.571 kb on - strand, within A4249_RS09650at 1923.571 kb on - strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.572 kb on + strand, within A4249_RS09650at 1923.573 kb on - strand, within A4249_RS09650at 1923.573 kb on - strand, within A4249_RS09650at 1923.573 kb on - strand, within A4249_RS09650at 1923.573 kb on - strand, within A4249_RS09650at 1923.603 kb on + strand, within A4249_RS09650at 1923.603 kb on + strand, within A4249_RS09650at 1923.603 kb on + strand, within A4249_RS09650at 1923.604 kb on - strand, within A4249_RS09650at 1923.661 kb on - strand, within A4249_RS09650at 1923.661 kb on - strand, within A4249_RS09650at 1923.661 kb on - strand, within A4249_RS09650at 1923.661 kb on - strand, within A4249_RS09650at 1923.661 kb on - strand, within A4249_RS09650at 1923.708 kb on + strand, within A4249_RS09650at 1923.708 kb on + strand, within A4249_RS09650at 1923.708 kb on + strand, within A4249_RS09650at 1923.708 kb on + strand, within A4249_RS09650at 1923.709 kb on - strand, within A4249_RS09650at 1923.709 kb on - strand, within A4249_RS09650at 1923.709 kb on - strand, within A4249_RS09650at 1923.709 kb on - strand, within A4249_RS09650at 1923.709 kb on - strand, within A4249_RS09650at 1923.742 kb on - strand, within A4249_RS09650at 1924.005 kb on + strand, within A4249_RS09650at 1924.005 kb on + strand, within A4249_RS09650at 1924.006 kb on - strand, within A4249_RS09650at 1924.065 kb on + strand, within A4249_RS09650at 1924.065 kb on + strand, within A4249_RS09650at 1924.065 kb on + strand, within A4249_RS09650at 1924.065 kb on + strand, within A4249_RS09650at 1924.065 kb on + strand, within A4249_RS09650at 1924.066 kb on - strand, within A4249_RS09650at 1924.066 kb on - strand, within A4249_RS09650at 1924.066 kb on - strand, within A4249_RS09650at 1924.066 kb on - strand, within A4249_RS09650at 1924.071 kb on + strand, within A4249_RS09650at 1924.072 kb on - strand, within A4249_RS09650at 1924.072 kb on - strand, within A4249_RS09650at 1924.072 kb on - strand, within A4249_RS09650at 1924.091 kb on + strand, within A4249_RS09650at 1924.091 kb on + strand, within A4249_RS09650at 1924.091 kb on + strand, within A4249_RS09650at 1924.091 kb on + strand, within A4249_RS09650at 1924.092 kb on - strand, within A4249_RS09650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
remove
1,922,026 + A4249_RS09635 0.89 +1.0
1,922,257 + -0.3
1,922,257 + -1.7
1,922,258 - +0.3
1,922,258 - -2.0
1,922,322 + A4249_RS09640 0.17 +0.1
1,922,323 - A4249_RS09640 0.18 -0.5
1,922,323 - A4249_RS09640 0.18 -0.7
1,922,430 + A4249_RS09640 0.43 +0.3
1,922,431 - A4249_RS09640 0.43 +1.1
1,922,462 + A4249_RS09640 0.50 -0.1
1,922,462 + A4249_RS09640 0.50 -1.5
1,922,462 + A4249_RS09640 0.50 -0.1
1,922,463 - A4249_RS09640 0.50 -0.7
1,922,463 - A4249_RS09640 0.50 +0.8
1,922,703 + -0.1
1,922,856 - A4249_RS09645 0.34 -0.8
1,922,960 + A4249_RS09645 0.54 +0.2
1,922,960 + A4249_RS09645 0.54 -0.3
1,922,961 - A4249_RS09645 0.55 -2.3
1,923,128 + A4249_RS09645 0.88 +0.9
1,923,128 + A4249_RS09645 0.88 -0.1
1,923,202 + -0.6
1,923,202 + -1.8
1,923,202 + +0.1
1,923,203 - +0.3
1,923,203 - -1.3
1,923,203 - -3.0
1,923,203 - +0.3
1,923,249 + -0.7
1,923,249 + +1.1
1,923,250 - +0.3
1,923,250 - +1.6
1,923,250 - -0.3
1,923,250 - -1.4
1,923,369 + +1.7
1,923,369 + +0.7
1,923,370 - +0.6
1,923,370 - -2.0
1,923,370 - +0.9
1,923,378 + -0.0
1,923,378 + +0.7
1,923,378 + -2.0
1,923,379 - +0.4
1,923,379 - -0.5
1,923,379 - -1.0
1,923,379 - +0.4
1,923,379 - +0.5
1,923,379 - +0.4
1,923,379 - -0.1
1,923,570 + A4249_RS09650 0.19 +0.3
1,923,570 + A4249_RS09650 0.19 +0.1
1,923,570 + A4249_RS09650 0.19 +0.6
1,923,571 - A4249_RS09650 0.19 +0.7
1,923,571 - A4249_RS09650 0.19 +0.5
1,923,572 + A4249_RS09650 0.19 +0.9
1,923,572 + A4249_RS09650 0.19 -0.9
1,923,572 + A4249_RS09650 0.19 -1.3
1,923,572 + A4249_RS09650 0.19 -1.1
1,923,572 + A4249_RS09650 0.19 -0.7
1,923,572 + A4249_RS09650 0.19 +0.3
1,923,572 + A4249_RS09650 0.19 -1.3
1,923,573 - A4249_RS09650 0.19 -0.7
1,923,573 - A4249_RS09650 0.19 -1.2
1,923,573 - A4249_RS09650 0.19 -0.7
1,923,573 - A4249_RS09650 0.19 +1.2
1,923,603 + A4249_RS09650 0.20 +1.7
1,923,603 + A4249_RS09650 0.20 -2.9
1,923,603 + A4249_RS09650 0.20 -0.1
1,923,604 - A4249_RS09650 0.21 -0.6
1,923,661 - A4249_RS09650 0.24 +1.1
1,923,661 - A4249_RS09650 0.24 -0.3
1,923,661 - A4249_RS09650 0.24 +0.9
1,923,661 - A4249_RS09650 0.24 -0.4
1,923,661 - A4249_RS09650 0.24 -0.6
1,923,708 + A4249_RS09650 0.26 -0.8
1,923,708 + A4249_RS09650 0.26 +0.0
1,923,708 + A4249_RS09650 0.26 -0.6
1,923,708 + A4249_RS09650 0.26 +0.1
1,923,709 - A4249_RS09650 0.26 -3.2
1,923,709 - A4249_RS09650 0.26 +1.6
1,923,709 - A4249_RS09650 0.26 +1.0
1,923,709 - A4249_RS09650 0.26 -0.5
1,923,709 - A4249_RS09650 0.26 +0.1
1,923,742 - A4249_RS09650 0.28 +0.6
1,924,005 + A4249_RS09650 0.43 +0.3
1,924,005 + A4249_RS09650 0.43 -1.3
1,924,006 - A4249_RS09650 0.43 -3.2
1,924,065 + A4249_RS09650 0.46 -0.5
1,924,065 + A4249_RS09650 0.46 -1.0
1,924,065 + A4249_RS09650 0.46 -0.7
1,924,065 + A4249_RS09650 0.46 +1.3
1,924,065 + A4249_RS09650 0.46 -0.7
1,924,066 - A4249_RS09650 0.46 -0.2
1,924,066 - A4249_RS09650 0.46 -0.0
1,924,066 - A4249_RS09650 0.46 -0.5
1,924,066 - A4249_RS09650 0.46 -2.3
1,924,071 + A4249_RS09650 0.47 -0.4
1,924,072 - A4249_RS09650 0.47 +4.2
1,924,072 - A4249_RS09650 0.47 -0.3
1,924,072 - A4249_RS09650 0.47 -0.7
1,924,091 + A4249_RS09650 0.48 -1.9
1,924,091 + A4249_RS09650 0.48 -0.1
1,924,091 + A4249_RS09650 0.48 +0.9
1,924,091 + A4249_RS09650 0.48 +0.3
1,924,092 - A4249_RS09650 0.48 +1.0

Or see this region's nucleotide sequence