Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08820

Experiment: D-Glucose (C); 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08810 and A4249_RS08815 are separated by 131 nucleotidesA4249_RS08815 and A4249_RS08820 are separated by 141 nucleotidesA4249_RS08820 and A4249_RS08825 are separated by 69 nucleotidesA4249_RS08825 and A4249_RS08830 are separated by 103 nucleotides A4249_RS08810: A4249_RS08810 - thiamine phosphate synthase, at 1,766,595 to 1,767,248 _RS08810 A4249_RS08815: A4249_RS08815 - (2Fe-2S)-binding protein, at 1,767,380 to 1,767,565 _RS08815 A4249_RS08820: A4249_RS08820 - bacterioferritin, at 1,767,707 to 1,768,207 _RS08820 A4249_RS08825: A4249_RS08825 - tryptophan-rich sensory protein, at 1,768,277 to 1,768,837 _RS08825 A4249_RS08830: A4249_RS08830 - elongation factor P, at 1,768,941 to 1,769,507 _RS08830 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.290 kb on - strandat 1767.339 kb on + strandat 1767.340 kb on - strandat 1767.340 kb on - strandat 1767.341 kb on + strandat 1767.342 kb on - strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.397 kb on + strandat 1767.397 kb on + strandat 1767.398 kb on - strandat 1767.563 kb on + strandat 1767.563 kb on + strandat 1767.564 kb on - strandat 1767.564 kb on - strandat 1767.643 kb on + strandat 1767.644 kb on - strandat 1767.644 kb on - strandat 1767.644 kb on - strandat 1767.651 kb on + strandat 1767.780 kb on - strand, within A4249_RS08820at 1767.780 kb on - strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.840 kb on - strand, within A4249_RS08820at 1767.840 kb on - strand, within A4249_RS08820at 1768.046 kb on + strand, within A4249_RS08820at 1768.046 kb on + strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.151 kb on + strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.475 kb on - strand, within A4249_RS08825at 1768.549 kb on - strand, within A4249_RS08825at 1768.599 kb on + strand, within A4249_RS08825at 1768.600 kb on - strand, within A4249_RS08825at 1768.600 kb on - strand, within A4249_RS08825at 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.858 kb on - strandat 1768.873 kb on - strandat 1768.873 kb on - strandat 1769.205 kb on + strand, within A4249_RS08830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
remove
1,767,289 + -0.3
1,767,289 + -0.2
1,767,289 + +2.3
1,767,290 - -1.9
1,767,339 + -0.2
1,767,340 - +0.1
1,767,340 - +1.7
1,767,341 + -0.7
1,767,342 - +1.0
1,767,383 + -1.3
1,767,383 + -2.1
1,767,383 + -0.7
1,767,384 - +0.3
1,767,384 - -2.1
1,767,384 - +0.7
1,767,384 - -1.3
1,767,384 - -1.2
1,767,397 + +2.4
1,767,397 + -1.6
1,767,398 - -0.1
1,767,563 + -0.3
1,767,563 + -0.3
1,767,564 - +1.6
1,767,564 - -1.3
1,767,643 + +0.1
1,767,644 - +2.1
1,767,644 - +0.8
1,767,644 - +1.6
1,767,651 + +0.3
1,767,780 - A4249_RS08820 0.15 +0.3
1,767,780 - A4249_RS08820 0.15 -0.8
1,767,839 + A4249_RS08820 0.26 -1.1
1,767,839 + A4249_RS08820 0.26 -0.5
1,767,839 + A4249_RS08820 0.26 +1.0
1,767,839 + A4249_RS08820 0.26 +0.8
1,767,839 + A4249_RS08820 0.26 -2.7
1,767,839 + A4249_RS08820 0.26 +1.3
1,767,839 + A4249_RS08820 0.26 -0.7
1,767,840 - A4249_RS08820 0.27 +1.8
1,767,840 - A4249_RS08820 0.27 +0.1
1,768,046 + A4249_RS08820 0.68 +0.8
1,768,046 + A4249_RS08820 0.68 +2.4
1,768,047 - A4249_RS08820 0.68 +0.3
1,768,047 - A4249_RS08820 0.68 +0.4
1,768,151 + A4249_RS08820 0.89 +0.4
1,768,152 - A4249_RS08820 0.89 +1.1
1,768,152 - A4249_RS08820 0.89 -1.7
1,768,152 - A4249_RS08820 0.89 -0.2
1,768,205 + +0.3
1,768,205 + -0.3
1,768,205 + -0.0
1,768,206 - -0.3
1,768,206 - +1.2
1,768,206 - +0.8
1,768,206 - -1.0
1,768,206 - -1.3
1,768,206 - +0.9
1,768,474 + A4249_RS08825 0.35 -0.3
1,768,474 + A4249_RS08825 0.35 +0.1
1,768,474 + A4249_RS08825 0.35 +0.5
1,768,474 + A4249_RS08825 0.35 -0.6
1,768,475 - A4249_RS08825 0.35 -0.7
1,768,549 - A4249_RS08825 0.48 -0.3
1,768,599 + A4249_RS08825 0.57 +1.3
1,768,600 - A4249_RS08825 0.58 +0.1
1,768,600 - A4249_RS08825 0.58 +0.3
1,768,835 + -0.7
1,768,835 + +1.6
1,768,835 + -0.3
1,768,835 + -0.6
1,768,835 + +0.7
1,768,835 + -2.7
1,768,835 + +2.7
1,768,835 + +0.5
1,768,835 + -0.7
1,768,836 - -1.9
1,768,836 - -1.3
1,768,836 - +0.3
1,768,836 - +0.3
1,768,836 - -3.9
1,768,836 - -0.1
1,768,836 - -0.4
1,768,836 - +0.8
1,768,858 - -1.3
1,768,873 - +1.3
1,768,873 - +0.3
1,769,205 + A4249_RS08830 0.47 -2.9

Or see this region's nucleotide sequence