Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08640

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08635 and A4249_RS08640 are separated by 172 nucleotidesA4249_RS08640 and A4249_RS08645 are separated by 91 nucleotides A4249_RS08635: A4249_RS08635 - flagellar hook protein FlgE, at 1,734,613 to 1,736,370 _RS08635 A4249_RS08640: A4249_RS08640 - DUF1153 domain-containing protein, at 1,736,543 to 1,736,827 _RS08640 A4249_RS08645: A4249_RS08645 - tRNA 2-thiouridine(34) synthase MnmA, at 1,736,919 to 1,738,130 _RS08645 Position (kb) 1736 1737Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1735.657 kb on + strand, within A4249_RS08635at 1735.658 kb on - strand, within A4249_RS08635at 1735.709 kb on - strand, within A4249_RS08635at 1735.709 kb on - strand, within A4249_RS08635at 1735.774 kb on - strand, within A4249_RS08635at 1736.155 kb on + strand, within A4249_RS08635at 1736.156 kb on - strand, within A4249_RS08635at 1736.156 kb on - strand, within A4249_RS08635at 1736.156 kb on - strand, within A4249_RS08635at 1736.299 kb on + strandat 1736.299 kb on + strandat 1736.299 kb on + strandat 1736.300 kb on - strandat 1736.379 kb on + strandat 1736.379 kb on + strandat 1736.379 kb on + strandat 1736.379 kb on + strandat 1736.380 kb on - strandat 1736.380 kb on - strandat 1736.383 kb on + strandat 1736.383 kb on + strandat 1736.384 kb on - strandat 1736.384 kb on - strandat 1736.384 kb on - strandat 1736.384 kb on - strandat 1736.390 kb on + strandat 1736.390 kb on + strandat 1736.422 kb on + strandat 1736.422 kb on + strandat 1736.451 kb on + strandat 1736.514 kb on + strandat 1736.514 kb on + strandat 1736.514 kb on + strandat 1736.514 kb on + strandat 1736.515 kb on - strandat 1736.536 kb on + strandat 1736.536 kb on + strandat 1736.537 kb on - strandat 1736.537 kb on - strandat 1736.566 kb on + strandat 1736.582 kb on + strand, within A4249_RS08640at 1736.582 kb on + strand, within A4249_RS08640at 1736.582 kb on + strand, within A4249_RS08640at 1736.582 kb on + strand, within A4249_RS08640at 1736.583 kb on - strand, within A4249_RS08640at 1736.583 kb on - strand, within A4249_RS08640at 1736.583 kb on - strand, within A4249_RS08640at 1736.726 kb on + strand, within A4249_RS08640at 1736.816 kb on + strandat 1736.846 kb on + strandat 1736.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,735,657 + A4249_RS08635 0.59 -0.5
1,735,658 - A4249_RS08635 0.59 +1.2
1,735,709 - A4249_RS08635 0.62 -0.7
1,735,709 - A4249_RS08635 0.62 -1.3
1,735,774 - A4249_RS08635 0.66 +1.0
1,736,155 + A4249_RS08635 0.88 +1.4
1,736,156 - A4249_RS08635 0.88 +0.3
1,736,156 - A4249_RS08635 0.88 -1.3
1,736,156 - A4249_RS08635 0.88 -0.1
1,736,299 + +1.1
1,736,299 + -0.4
1,736,299 + +1.8
1,736,300 - +0.0
1,736,379 + +2.6
1,736,379 + -1.5
1,736,379 + +0.7
1,736,379 + +1.6
1,736,380 - -0.9
1,736,380 - +0.3
1,736,383 + -0.6
1,736,383 + -2.0
1,736,384 - +0.4
1,736,384 - -0.6
1,736,384 - +1.9
1,736,384 - -0.1
1,736,390 + -0.1
1,736,390 + +0.3
1,736,422 + +1.3
1,736,422 + +1.4
1,736,451 + -2.0
1,736,514 + +0.3
1,736,514 + -1.7
1,736,514 + -2.5
1,736,514 + +0.3
1,736,515 - +0.2
1,736,536 + +1.5
1,736,536 + -1.7
1,736,537 - +0.5
1,736,537 - +0.3
1,736,566 + -1.0
1,736,582 + A4249_RS08640 0.14 -1.3
1,736,582 + A4249_RS08640 0.14 -0.3
1,736,582 + A4249_RS08640 0.14 -1.0
1,736,582 + A4249_RS08640 0.14 -1.6
1,736,583 - A4249_RS08640 0.14 -2.9
1,736,583 - A4249_RS08640 0.14 -0.7
1,736,583 - A4249_RS08640 0.14 -2.0
1,736,726 + A4249_RS08640 0.64 -2.0
1,736,816 + +0.3
1,736,846 + +0.3
1,736,916 + +0.5

Or see this region's nucleotide sequence