Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08585

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08580 and A4249_RS08585 are separated by 94 nucleotidesA4249_RS08585 and A4249_RS08590 overlap by 4 nucleotidesA4249_RS08590 and A4249_RS08595 are separated by 12 nucleotides A4249_RS08580: A4249_RS08580 - hypothetical protein, at 1,720,959 to 1,721,861 _RS08580 A4249_RS08585: A4249_RS08585 - ABC-type transport auxiliary lipoprotein family protein, at 1,721,956 to 1,722,606 _RS08585 A4249_RS08590: A4249_RS08590 - MlaD family protein, at 1,722,603 to 1,723,541 _RS08590 A4249_RS08595: A4249_RS08595 - ABC transporter ATP-binding protein, at 1,723,554 to 1,724,330 _RS08595 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.536 kb on + strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.774 kb on - strandat 1721.895 kb on - strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1722.200 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.377 kb on - strand, within A4249_RS08585at 1722.507 kb on - strand, within A4249_RS08585at 1722.644 kb on + strandat 1722.866 kb on + strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.904 kb on + strand, within A4249_RS08590at 1722.904 kb on + strand, within A4249_RS08590at 1723.163 kb on - strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.214 kb on - strand, within A4249_RS08590at 1723.214 kb on - strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.432 kb on + strand, within A4249_RS08590at 1723.433 kb on - strand, within A4249_RS08590at 1723.522 kb on + strandat 1723.523 kb on - strandat 1723.523 kb on - strandat 1723.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,721,023 + -0.1
1,721,023 + -0.2
1,721,023 + +0.1
1,721,023 + -1.5
1,721,023 + -1.3
1,721,024 - -0.5
1,721,024 - -0.6
1,721,024 - -0.4
1,721,024 - +2.1
1,721,024 - +0.3
1,721,024 - +2.1
1,721,536 + A4249_RS08580 0.64 -0.7
1,721,537 - A4249_RS08580 0.64 +1.2
1,721,537 - A4249_RS08580 0.64 -0.0
1,721,537 - A4249_RS08580 0.64 +1.6
1,721,537 - A4249_RS08580 0.64 -1.2
1,721,644 + A4249_RS08580 0.76 -1.2
1,721,644 + A4249_RS08580 0.76 +0.3
1,721,644 + A4249_RS08580 0.76 +3.3
1,721,644 + A4249_RS08580 0.76 +0.3
1,721,645 - A4249_RS08580 0.76 +0.1
1,721,645 - A4249_RS08580 0.76 +0.2
1,721,645 - A4249_RS08580 0.76 -0.3
1,721,645 - A4249_RS08580 0.76 +0.3
1,721,645 - A4249_RS08580 0.76 -0.3
1,721,761 + A4249_RS08580 0.89 +0.3
1,721,761 + A4249_RS08580 0.89 +1.6
1,721,761 + A4249_RS08580 0.89 -0.2
1,721,761 + A4249_RS08580 0.89 -1.3
1,721,761 + A4249_RS08580 0.89 +0.9
1,721,761 + A4249_RS08580 0.89 -2.3
1,721,762 - A4249_RS08580 0.89 +2.1
1,721,762 - A4249_RS08580 0.89 -0.1
1,721,762 - A4249_RS08580 0.89 -1.1
1,721,762 - A4249_RS08580 0.89 +0.3
1,721,762 - A4249_RS08580 0.89 -2.0
1,721,774 - -0.5
1,721,895 - -0.3
1,721,901 + +0.4
1,721,901 + -0.8
1,721,901 + +1.3
1,721,901 + -1.3
1,721,911 + +0.9
1,721,911 + -1.7
1,721,911 + -0.0
1,721,911 + -1.7
1,721,911 + +1.0
1,721,912 - +0.9
1,721,912 - -0.0
1,721,912 - -0.2
1,721,912 - +0.6
1,721,912 - -0.3
1,721,912 - +0.6
1,722,200 + A4249_RS08585 0.37 -2.0
1,722,365 + A4249_RS08585 0.63 -2.0
1,722,365 + A4249_RS08585 0.63 -1.3
1,722,365 + A4249_RS08585 0.63 -0.1
1,722,366 - A4249_RS08585 0.63 +0.3
1,722,366 - A4249_RS08585 0.63 +0.3
1,722,366 - A4249_RS08585 0.63 -1.6
1,722,366 - A4249_RS08585 0.63 -0.3
1,722,377 - A4249_RS08585 0.65 -0.6
1,722,507 - A4249_RS08585 0.85 -1.6
1,722,644 + +0.3
1,722,866 + A4249_RS08590 0.28 -2.9
1,722,867 - A4249_RS08590 0.28 -1.7
1,722,867 - A4249_RS08590 0.28 +0.3
1,722,867 - A4249_RS08590 0.28 +0.7
1,722,904 + A4249_RS08590 0.32 -0.7
1,722,904 + A4249_RS08590 0.32 -0.0
1,723,163 - A4249_RS08590 0.60 -2.9
1,723,213 + A4249_RS08590 0.65 +0.3
1,723,213 + A4249_RS08590 0.65 -0.3
1,723,213 + A4249_RS08590 0.65 -3.2
1,723,213 + A4249_RS08590 0.65 -2.3
1,723,214 - A4249_RS08590 0.65 -2.5
1,723,214 - A4249_RS08590 0.65 +0.3
1,723,408 + A4249_RS08590 0.86 +0.3
1,723,408 + A4249_RS08590 0.86 +0.3
1,723,408 + A4249_RS08590 0.86 -2.3
1,723,408 + A4249_RS08590 0.86 -0.7
1,723,409 - A4249_RS08590 0.86 -2.9
1,723,409 - A4249_RS08590 0.86 -1.3
1,723,409 - A4249_RS08590 0.86 -0.7
1,723,423 + A4249_RS08590 0.87 -1.3
1,723,423 + A4249_RS08590 0.87 -1.7
1,723,423 + A4249_RS08590 0.87 -1.4
1,723,423 + A4249_RS08590 0.87 +0.3
1,723,423 + A4249_RS08590 0.87 -2.5
1,723,423 + A4249_RS08590 0.87 -1.5
1,723,424 - A4249_RS08590 0.87 -2.7
1,723,424 - A4249_RS08590 0.87 -0.7
1,723,424 - A4249_RS08590 0.87 -3.3
1,723,424 - A4249_RS08590 0.87 -1.3
1,723,424 - A4249_RS08590 0.87 -2.0
1,723,424 - A4249_RS08590 0.87 -0.7
1,723,424 - A4249_RS08590 0.87 -1.7
1,723,424 - A4249_RS08590 0.87 -2.3
1,723,432 + A4249_RS08590 0.88 -0.7
1,723,433 - A4249_RS08590 0.88 -1.0
1,723,522 + -1.6
1,723,523 - +0.3
1,723,523 - -0.7
1,723,523 - -2.7

Or see this region's nucleotide sequence