Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08535

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08525 and A4249_RS08530 are separated by 76 nucleotidesA4249_RS08530 and A4249_RS08535 are separated by 179 nucleotidesA4249_RS08535 and A4249_RS08540 are separated by 183 nucleotides A4249_RS08525: A4249_RS08525 - glutamate--tRNA ligase, at 1,708,990 to 1,710,324 _RS08525 A4249_RS08530: A4249_RS08530 - RNA polymerase-binding protein DksA, at 1,710,401 to 1,710,835 _RS08530 A4249_RS08535: A4249_RS08535 - flagellar assembly protein FliX, at 1,711,015 to 1,711,440 _RS08535 A4249_RS08540: A4249_RS08540 - flagellar basal body P-ring protein FlgI, at 1,711,624 to 1,712,745 _RS08540 Position (kb) 1711 1712Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1710.395 kb on + strandat 1710.395 kb on + strandat 1710.395 kb on + strandat 1710.396 kb on - strandat 1710.523 kb on - strand, within A4249_RS08530at 1710.528 kb on + strand, within A4249_RS08530at 1710.529 kb on - strand, within A4249_RS08530at 1710.529 kb on - strand, within A4249_RS08530at 1710.744 kb on + strand, within A4249_RS08530at 1710.744 kb on + strand, within A4249_RS08530at 1710.744 kb on + strand, within A4249_RS08530at 1710.745 kb on - strand, within A4249_RS08530at 1710.745 kb on - strand, within A4249_RS08530at 1710.745 kb on - strand, within A4249_RS08530at 1710.852 kb on - strandat 1710.871 kb on + strandat 1710.871 kb on + strandat 1710.872 kb on - strandat 1710.881 kb on + strandat 1710.882 kb on - strandat 1710.882 kb on - strandat 1710.882 kb on - strandat 1710.882 kb on - strandat 1710.883 kb on + strandat 1710.883 kb on + strandat 1710.884 kb on - strandat 1710.884 kb on - strandat 1710.884 kb on - strandat 1710.884 kb on - strandat 1710.884 kb on - strandat 1710.884 kb on - strandat 1710.985 kb on - strandat 1711.006 kb on + strandat 1711.014 kb on - strandat 1711.389 kb on + strand, within A4249_RS08535at 1711.389 kb on + strand, within A4249_RS08535at 1711.564 kb on + strandat 1711.564 kb on + strandat 1711.565 kb on - strandat 1711.600 kb on + strandat 1711.600 kb on + strandat 1711.772 kb on - strand, within A4249_RS08540at 1711.811 kb on + strand, within A4249_RS08540at 1711.903 kb on - strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.053 kb on + strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.054 kb on - strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.199 kb on + strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.200 kb on - strand, within A4249_RS08540at 1712.279 kb on - strand, within A4249_RS08540at 1712.308 kb on - strand, within A4249_RS08540at 1712.392 kb on - strand, within A4249_RS08540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,710,395 + +0.3
1,710,395 + -2.0
1,710,395 + -1.8
1,710,396 - -0.5
1,710,523 - A4249_RS08530 0.28 +0.3
1,710,528 + A4249_RS08530 0.29 -2.0
1,710,529 - A4249_RS08530 0.29 -0.7
1,710,529 - A4249_RS08530 0.29 -5.7
1,710,744 + A4249_RS08530 0.79 -2.9
1,710,744 + A4249_RS08530 0.79 -2.0
1,710,744 + A4249_RS08530 0.79 -1.3
1,710,745 - A4249_RS08530 0.79 -3.6
1,710,745 - A4249_RS08530 0.79 -4.1
1,710,745 - A4249_RS08530 0.79 -2.8
1,710,852 - -5.0
1,710,871 + -2.7
1,710,871 + -1.3
1,710,872 - -0.7
1,710,881 + -3.3
1,710,882 - -2.0
1,710,882 - -1.3
1,710,882 - -3.3
1,710,882 - -3.0
1,710,883 + -2.7
1,710,883 + +0.3
1,710,884 - -3.2
1,710,884 - -3.5
1,710,884 - -4.5
1,710,884 - -0.7
1,710,884 - -0.7
1,710,884 - -0.7
1,710,985 - +2.4
1,711,006 + +1.7
1,711,014 - +0.5
1,711,389 + A4249_RS08535 0.88 -0.0
1,711,389 + A4249_RS08535 0.88 -0.0
1,711,564 + -1.6
1,711,564 + +0.9
1,711,565 - +0.0
1,711,600 + +0.0
1,711,600 + +1.6
1,711,772 - A4249_RS08540 0.13 -1.7
1,711,811 + A4249_RS08540 0.17 +1.1
1,711,903 - A4249_RS08540 0.25 +0.1
1,712,053 + A4249_RS08540 0.38 +1.5
1,712,053 + A4249_RS08540 0.38 +0.4
1,712,053 + A4249_RS08540 0.38 -1.9
1,712,053 + A4249_RS08540 0.38 -0.6
1,712,054 - A4249_RS08540 0.38 +0.0
1,712,054 - A4249_RS08540 0.38 +1.0
1,712,054 - A4249_RS08540 0.38 +4.2
1,712,054 - A4249_RS08540 0.38 -0.5
1,712,054 - A4249_RS08540 0.38 +0.1
1,712,054 - A4249_RS08540 0.38 -0.7
1,712,199 + A4249_RS08540 0.51 -0.9
1,712,199 + A4249_RS08540 0.51 -0.8
1,712,199 + A4249_RS08540 0.51 +0.6
1,712,199 + A4249_RS08540 0.51 +1.2
1,712,200 - A4249_RS08540 0.51 +1.0
1,712,200 - A4249_RS08540 0.51 -1.0
1,712,200 - A4249_RS08540 0.51 +2.7
1,712,200 - A4249_RS08540 0.51 +1.6
1,712,279 - A4249_RS08540 0.58 -0.3
1,712,308 - A4249_RS08540 0.61 +0.0
1,712,392 - A4249_RS08540 0.68 +1.3

Or see this region's nucleotide sequence