Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07930

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07920 and A4249_RS07925 overlap by 1 nucleotidesA4249_RS07925 and A4249_RS07930 overlap by 4 nucleotidesA4249_RS07930 and A4249_RS07935 are separated by 0 nucleotides A4249_RS07920: A4249_RS07920 - metalloregulator ArsR/SmtB family transcription factor, at 1,583,693 to 1,584,652 _RS07920 A4249_RS07925: A4249_RS07925 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,584,652 to 1,585,608 _RS07925 A4249_RS07930: A4249_RS07930 - homocysteine S-methyltransferase family protein, at 1,585,605 to 1,586,687 _RS07930 A4249_RS07935: A4249_RS07935 - methionine synthase, at 1,586,688 to 1,589,354 _RS07935 Position (kb) 1585 1586 1587Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1584.637 kb on + strandat 1584.637 kb on + strandat 1584.859 kb on + strand, within A4249_RS07925at 1584.859 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.998 kb on - strand, within A4249_RS07925at 1584.998 kb on - strand, within A4249_RS07925at 1585.072 kb on + strand, within A4249_RS07925at 1585.072 kb on + strand, within A4249_RS07925at 1585.073 kb on - strand, within A4249_RS07925at 1585.073 kb on - strand, within A4249_RS07925at 1585.094 kb on - strand, within A4249_RS07925at 1585.162 kb on + strand, within A4249_RS07925at 1585.398 kb on + strand, within A4249_RS07925at 1585.531 kb on + strandat 1585.531 kb on + strandat 1585.532 kb on - strandat 1585.532 kb on - strandat 1585.532 kb on - strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.559 kb on - strandat 1585.752 kb on + strand, within A4249_RS07930at 1585.752 kb on + strand, within A4249_RS07930at 1585.753 kb on - strand, within A4249_RS07930at 1585.753 kb on - strand, within A4249_RS07930at 1585.753 kb on - strand, within A4249_RS07930at 1585.836 kb on + strand, within A4249_RS07930at 1585.836 kb on + strand, within A4249_RS07930at 1585.836 kb on + strand, within A4249_RS07930at 1585.858 kb on + strand, within A4249_RS07930at 1585.858 kb on + strand, within A4249_RS07930at 1585.858 kb on + strand, within A4249_RS07930at 1585.858 kb on + strand, within A4249_RS07930at 1585.858 kb on + strand, within A4249_RS07930at 1585.859 kb on - strand, within A4249_RS07930at 1585.859 kb on - strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.905 kb on + strand, within A4249_RS07930at 1585.906 kb on - strand, within A4249_RS07930at 1585.906 kb on - strand, within A4249_RS07930at 1585.906 kb on - strand, within A4249_RS07930at 1585.906 kb on - strand, within A4249_RS07930at 1586.106 kb on + strand, within A4249_RS07930at 1586.106 kb on + strand, within A4249_RS07930at 1586.106 kb on + strand, within A4249_RS07930at 1586.106 kb on + strand, within A4249_RS07930at 1586.106 kb on + strand, within A4249_RS07930at 1586.107 kb on - strand, within A4249_RS07930at 1586.107 kb on - strand, within A4249_RS07930at 1586.107 kb on - strand, within A4249_RS07930at 1586.107 kb on - strand, within A4249_RS07930at 1586.115 kb on + strand, within A4249_RS07930at 1586.161 kb on - strand, within A4249_RS07930at 1586.332 kb on + strand, within A4249_RS07930at 1586.333 kb on - strand, within A4249_RS07930at 1586.333 kb on - strand, within A4249_RS07930at 1586.333 kb on - strand, within A4249_RS07930at 1586.333 kb on - strand, within A4249_RS07930at 1586.333 kb on - strand, within A4249_RS07930at 1586.478 kb on + strand, within A4249_RS07930at 1586.479 kb on - strand, within A4249_RS07930at 1586.479 kb on - strand, within A4249_RS07930at 1586.543 kb on + strand, within A4249_RS07930at 1586.544 kb on - strand, within A4249_RS07930at 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.685 kb on + strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.686 kb on - strandat 1586.772 kb on + strandat 1586.773 kb on - strandat 1586.838 kb on - strandat 1586.838 kb on - strandat 1587.060 kb on + strand, within A4249_RS07935at 1587.147 kb on + strand, within A4249_RS07935at 1587.147 kb on + strand, within A4249_RS07935at 1587.147 kb on + strand, within A4249_RS07935at 1587.147 kb on + strand, within A4249_RS07935at 1587.147 kb on + strand, within A4249_RS07935at 1587.148 kb on - strand, within A4249_RS07935at 1587.148 kb on - strand, within A4249_RS07935at 1587.148 kb on - strand, within A4249_RS07935at 1587.148 kb on - strand, within A4249_RS07935at 1587.148 kb on - strand, within A4249_RS07935at 1587.188 kb on + strand, within A4249_RS07935at 1587.189 kb on - strand, within A4249_RS07935at 1587.189 kb on - strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.246 kb on + strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.247 kb on - strand, within A4249_RS07935at 1587.297 kb on + strand, within A4249_RS07935at 1587.387 kb on + strand, within A4249_RS07935at 1587.388 kb on - strand, within A4249_RS07935at 1587.447 kb on + strand, within A4249_RS07935at 1587.447 kb on + strand, within A4249_RS07935at 1587.448 kb on - strand, within A4249_RS07935at 1587.448 kb on - strand, within A4249_RS07935at 1587.448 kb on - strand, within A4249_RS07935at 1587.448 kb on - strand, within A4249_RS07935at 1587.448 kb on - strand, within A4249_RS07935at 1587.527 kb on + strand, within A4249_RS07935at 1587.527 kb on + strand, within A4249_RS07935at 1587.558 kb on + strand, within A4249_RS07935at 1587.558 kb on + strand, within A4249_RS07935at 1587.559 kb on - strand, within A4249_RS07935at 1587.559 kb on - strand, within A4249_RS07935at 1587.559 kb on - strand, within A4249_RS07935at 1587.559 kb on - strand, within A4249_RS07935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,584,637 + -0.7
1,584,637 + +0.3
1,584,859 + A4249_RS07925 0.22 -5.0
1,584,859 + A4249_RS07925 0.22 -4.7
1,584,997 + A4249_RS07925 0.36 -4.2
1,584,997 + A4249_RS07925 0.36 -4.1
1,584,997 + A4249_RS07925 0.36 -3.8
1,584,997 + A4249_RS07925 0.36 -1.3
1,584,998 - A4249_RS07925 0.36 -3.4
1,584,998 - A4249_RS07925 0.36 -2.7
1,585,072 + A4249_RS07925 0.44 -2.3
1,585,072 + A4249_RS07925 0.44 -5.9
1,585,073 - A4249_RS07925 0.44 -3.0
1,585,073 - A4249_RS07925 0.44 -1.3
1,585,094 - A4249_RS07925 0.46 -3.2
1,585,162 + A4249_RS07925 0.53 -3.0
1,585,398 + A4249_RS07925 0.78 -4.7
1,585,531 + -4.9
1,585,531 + -4.2
1,585,532 - -3.5
1,585,532 - -4.1
1,585,532 - -3.4
1,585,558 + -3.2
1,585,558 + -3.9
1,585,558 + -1.8
1,585,558 + -3.6
1,585,558 + -2.9
1,585,558 + -4.5
1,585,559 - -1.3
1,585,752 + A4249_RS07930 0.14 -4.0
1,585,752 + A4249_RS07930 0.14 -2.0
1,585,753 - A4249_RS07930 0.14 -3.5
1,585,753 - A4249_RS07930 0.14 -3.5
1,585,753 - A4249_RS07930 0.14 -2.5
1,585,836 + A4249_RS07930 0.21 -3.4
1,585,836 + A4249_RS07930 0.21 -3.6
1,585,836 + A4249_RS07930 0.21 -1.7
1,585,858 + A4249_RS07930 0.23 -5.9
1,585,858 + A4249_RS07930 0.23 -2.3
1,585,858 + A4249_RS07930 0.23 +0.3
1,585,858 + A4249_RS07930 0.23 -4.4
1,585,858 + A4249_RS07930 0.23 -0.7
1,585,859 - A4249_RS07930 0.23 -0.7
1,585,859 - A4249_RS07930 0.23 -2.9
1,585,905 + A4249_RS07930 0.28 -3.0
1,585,905 + A4249_RS07930 0.28 -3.6
1,585,905 + A4249_RS07930 0.28 -3.0
1,585,905 + A4249_RS07930 0.28 -4.2
1,585,905 + A4249_RS07930 0.28 -4.7
1,585,905 + A4249_RS07930 0.28 -0.7
1,585,905 + A4249_RS07930 0.28 -2.0
1,585,906 - A4249_RS07930 0.28 -1.5
1,585,906 - A4249_RS07930 0.28 -2.9
1,585,906 - A4249_RS07930 0.28 -2.5
1,585,906 - A4249_RS07930 0.28 -0.7
1,586,106 + A4249_RS07930 0.46 +0.3
1,586,106 + A4249_RS07930 0.46 -1.7
1,586,106 + A4249_RS07930 0.46 -0.7
1,586,106 + A4249_RS07930 0.46 -2.7
1,586,106 + A4249_RS07930 0.46 -5.4
1,586,107 - A4249_RS07930 0.46 -4.8
1,586,107 - A4249_RS07930 0.46 -4.1
1,586,107 - A4249_RS07930 0.46 -2.7
1,586,107 - A4249_RS07930 0.46 +0.3
1,586,115 + A4249_RS07930 0.47 -2.9
1,586,161 - A4249_RS07930 0.51 -1.7
1,586,332 + A4249_RS07930 0.67 -4.7
1,586,333 - A4249_RS07930 0.67 +0.3
1,586,333 - A4249_RS07930 0.67 -3.0
1,586,333 - A4249_RS07930 0.67 -2.0
1,586,333 - A4249_RS07930 0.67 -2.9
1,586,333 - A4249_RS07930 0.67 -2.3
1,586,478 + A4249_RS07930 0.81 -3.2
1,586,479 - A4249_RS07930 0.81 +0.3
1,586,479 - A4249_RS07930 0.81 -1.7
1,586,543 + A4249_RS07930 0.87 -3.6
1,586,544 - A4249_RS07930 0.87 -3.5
1,586,685 + -1.7
1,586,685 + -3.3
1,586,685 + -4.4
1,586,685 + -2.3
1,586,685 + -1.3
1,586,685 + -3.7
1,586,685 + -3.5
1,586,685 + -5.5
1,586,685 + -2.3
1,586,685 + -2.9
1,586,686 - -3.5
1,586,686 - -0.7
1,586,686 - -4.1
1,586,686 - -3.5
1,586,686 - -3.4
1,586,686 - +0.3
1,586,686 - -2.3
1,586,686 - -2.0
1,586,686 - -1.7
1,586,686 - -3.6
1,586,686 - -3.9
1,586,772 + -3.2
1,586,773 - -2.0
1,586,838 - -5.7
1,586,838 - -3.4
1,587,060 + A4249_RS07935 0.14 -4.1
1,587,147 + A4249_RS07935 0.17 -3.4
1,587,147 + A4249_RS07935 0.17 -2.0
1,587,147 + A4249_RS07935 0.17 -4.4
1,587,147 + A4249_RS07935 0.17 -4.2
1,587,147 + A4249_RS07935 0.17 -4.4
1,587,148 - A4249_RS07935 0.17 -2.7
1,587,148 - A4249_RS07935 0.17 -3.9
1,587,148 - A4249_RS07935 0.17 +0.3
1,587,148 - A4249_RS07935 0.17 -2.3
1,587,148 - A4249_RS07935 0.17 -2.0
1,587,188 + A4249_RS07935 0.19 -3.3
1,587,189 - A4249_RS07935 0.19 -4.1
1,587,189 - A4249_RS07935 0.19 -1.4
1,587,246 + A4249_RS07935 0.21 -3.8
1,587,246 + A4249_RS07935 0.21 -2.9
1,587,246 + A4249_RS07935 0.21 -0.7
1,587,246 + A4249_RS07935 0.21 -4.6
1,587,246 + A4249_RS07935 0.21 -1.7
1,587,246 + A4249_RS07935 0.21 -4.3
1,587,246 + A4249_RS07935 0.21 -0.7
1,587,246 + A4249_RS07935 0.21 -3.6
1,587,247 - A4249_RS07935 0.21 -4.8
1,587,247 - A4249_RS07935 0.21 -4.0
1,587,247 - A4249_RS07935 0.21 -2.5
1,587,247 - A4249_RS07935 0.21 -4.2
1,587,247 - A4249_RS07935 0.21 -3.5
1,587,247 - A4249_RS07935 0.21 -1.1
1,587,247 - A4249_RS07935 0.21 -3.4
1,587,297 + A4249_RS07935 0.23 -5.9
1,587,387 + A4249_RS07935 0.26 -0.7
1,587,388 - A4249_RS07935 0.26 +0.3
1,587,447 + A4249_RS07935 0.28 -5.0
1,587,447 + A4249_RS07935 0.28 -1.7
1,587,448 - A4249_RS07935 0.28 -1.4
1,587,448 - A4249_RS07935 0.28 -2.0
1,587,448 - A4249_RS07935 0.28 -1.3
1,587,448 - A4249_RS07935 0.28 -4.0
1,587,448 - A4249_RS07935 0.28 -3.4
1,587,527 + A4249_RS07935 0.31 -4.7
1,587,527 + A4249_RS07935 0.31 -4.0
1,587,558 + A4249_RS07935 0.33 -1.7
1,587,558 + A4249_RS07935 0.33 -4.7
1,587,559 - A4249_RS07935 0.33 -4.8
1,587,559 - A4249_RS07935 0.33 -2.0
1,587,559 - A4249_RS07935 0.33 -3.0
1,587,559 - A4249_RS07935 0.33 -5.0

Or see this region's nucleotide sequence