Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07920

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07910 and A4249_RS07915 are separated by 2 nucleotidesA4249_RS07915 and A4249_RS07920 are separated by 118 nucleotidesA4249_RS07920 and A4249_RS07925 overlap by 1 nucleotidesA4249_RS07925 and A4249_RS07930 overlap by 4 nucleotides A4249_RS07910: A4249_RS07910 - 2-hydroxyacid dehydrogenase, at 1,582,241 to 1,583,167 _RS07910 A4249_RS07915: A4249_RS07915 - EF-hand domain-containing protein, at 1,583,170 to 1,583,574 _RS07915 A4249_RS07920: A4249_RS07920 - metalloregulator ArsR/SmtB family transcription factor, at 1,583,693 to 1,584,652 _RS07920 A4249_RS07925: A4249_RS07925 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,584,652 to 1,585,608 _RS07925 A4249_RS07930: A4249_RS07930 - homocysteine S-methyltransferase family protein, at 1,585,605 to 1,586,687 _RS07930 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.275 kb on - strand, within A4249_RS07915at 1583.275 kb on - strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.354 kb on - strand, within A4249_RS07915at 1583.454 kb on + strand, within A4249_RS07915at 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.569 kb on - strandat 1583.604 kb on + strandat 1583.604 kb on + strandat 1583.604 kb on + strandat 1583.605 kb on - strandat 1583.670 kb on + strandat 1583.671 kb on - strandat 1583.671 kb on - strandat 1583.676 kb on + strandat 1583.676 kb on + strandat 1583.683 kb on - strandat 1583.684 kb on + strandat 1583.684 kb on + strandat 1583.685 kb on - strandat 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.904 kb on - strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.965 kb on - strand, within A4249_RS07920at 1584.041 kb on + strand, within A4249_RS07920at 1584.042 kb on - strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.374 kb on + strand, within A4249_RS07920at 1584.374 kb on + strand, within A4249_RS07920at 1584.375 kb on - strand, within A4249_RS07920at 1584.475 kb on + strand, within A4249_RS07920at 1584.475 kb on + strand, within A4249_RS07920at 1584.475 kb on + strand, within A4249_RS07920at 1584.637 kb on + strandat 1584.637 kb on + strandat 1584.859 kb on + strand, within A4249_RS07925at 1584.859 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.997 kb on + strand, within A4249_RS07925at 1584.998 kb on - strand, within A4249_RS07925at 1584.998 kb on - strand, within A4249_RS07925at 1585.072 kb on + strand, within A4249_RS07925at 1585.072 kb on + strand, within A4249_RS07925at 1585.073 kb on - strand, within A4249_RS07925at 1585.073 kb on - strand, within A4249_RS07925at 1585.094 kb on - strand, within A4249_RS07925at 1585.162 kb on + strand, within A4249_RS07925at 1585.398 kb on + strand, within A4249_RS07925at 1585.531 kb on + strandat 1585.531 kb on + strandat 1585.532 kb on - strandat 1585.532 kb on - strandat 1585.532 kb on - strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.558 kb on + strandat 1585.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,583,274 + A4249_RS07915 0.26 +0.3
1,583,274 + A4249_RS07915 0.26 -0.4
1,583,274 + A4249_RS07915 0.26 -0.2
1,583,274 + A4249_RS07915 0.26 -0.5
1,583,274 + A4249_RS07915 0.26 +0.0
1,583,274 + A4249_RS07915 0.26 +0.1
1,583,274 + A4249_RS07915 0.26 -0.1
1,583,274 + A4249_RS07915 0.26 -1.7
1,583,275 - A4249_RS07915 0.26 +1.6
1,583,275 - A4249_RS07915 0.26 -1.6
1,583,353 + A4249_RS07915 0.45 -0.5
1,583,353 + A4249_RS07915 0.45 -0.4
1,583,353 + A4249_RS07915 0.45 -0.8
1,583,354 - A4249_RS07915 0.45 +1.1
1,583,454 + A4249_RS07915 0.70 -0.7
1,583,568 + +0.3
1,583,568 + +0.8
1,583,568 + +1.3
1,583,568 + +0.9
1,583,568 + +1.1
1,583,569 - +0.4
1,583,604 + -1.4
1,583,604 + -0.7
1,583,604 + -2.4
1,583,605 - -0.4
1,583,670 + -0.3
1,583,671 - -2.9
1,583,671 - -2.3
1,583,676 + -2.4
1,583,676 + -1.8
1,583,683 - -0.5
1,583,684 + -1.3
1,583,684 + +0.3
1,583,685 - -1.7
1,583,903 + A4249_RS07920 0.22 -2.3
1,583,903 + A4249_RS07920 0.22 -2.3
1,583,903 + A4249_RS07920 0.22 -2.5
1,583,903 + A4249_RS07920 0.22 -2.7
1,583,903 + A4249_RS07920 0.22 -1.7
1,583,904 - A4249_RS07920 0.22 -2.5
1,583,906 + A4249_RS07920 0.22 -0.7
1,583,906 + A4249_RS07920 0.22 +0.3
1,583,906 + A4249_RS07920 0.22 -3.0
1,583,906 + A4249_RS07920 0.22 -2.3
1,583,907 - A4249_RS07920 0.22 -1.7
1,583,907 - A4249_RS07920 0.22 -1.7
1,583,907 - A4249_RS07920 0.22 -3.0
1,583,965 - A4249_RS07920 0.28 -0.7
1,584,041 + A4249_RS07920 0.36 +0.3
1,584,042 - A4249_RS07920 0.36 -2.7
1,584,086 + A4249_RS07920 0.41 -3.2
1,584,086 + A4249_RS07920 0.41 -3.8
1,584,086 + A4249_RS07920 0.41 -2.7
1,584,086 + A4249_RS07920 0.41 -0.7
1,584,087 - A4249_RS07920 0.41 -2.0
1,584,087 - A4249_RS07920 0.41 -1.7
1,584,087 - A4249_RS07920 0.41 -0.7
1,584,087 - A4249_RS07920 0.41 -1.3
1,584,374 + A4249_RS07920 0.71 -1.3
1,584,374 + A4249_RS07920 0.71 -2.0
1,584,375 - A4249_RS07920 0.71 -2.5
1,584,475 + A4249_RS07920 0.81 -2.0
1,584,475 + A4249_RS07920 0.81 -2.5
1,584,475 + A4249_RS07920 0.81 -1.3
1,584,637 + -0.7
1,584,637 + +0.3
1,584,859 + A4249_RS07925 0.22 -5.0
1,584,859 + A4249_RS07925 0.22 -4.7
1,584,997 + A4249_RS07925 0.36 -4.2
1,584,997 + A4249_RS07925 0.36 -4.1
1,584,997 + A4249_RS07925 0.36 -3.8
1,584,997 + A4249_RS07925 0.36 -1.3
1,584,998 - A4249_RS07925 0.36 -3.4
1,584,998 - A4249_RS07925 0.36 -2.7
1,585,072 + A4249_RS07925 0.44 -2.3
1,585,072 + A4249_RS07925 0.44 -5.9
1,585,073 - A4249_RS07925 0.44 -3.0
1,585,073 - A4249_RS07925 0.44 -1.3
1,585,094 - A4249_RS07925 0.46 -3.2
1,585,162 + A4249_RS07925 0.53 -3.0
1,585,398 + A4249_RS07925 0.78 -4.7
1,585,531 + -4.9
1,585,531 + -4.2
1,585,532 - -3.5
1,585,532 - -4.1
1,585,532 - -3.4
1,585,558 + -3.2
1,585,558 + -3.9
1,585,558 + -1.8
1,585,558 + -3.6
1,585,558 + -2.9
1,585,558 + -4.5
1,585,559 - -1.3

Or see this region's nucleotide sequence