Experiment: D-Glucose (C); 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS06830 and A4249_RS06835 are separated by 320 nucleotides A4249_RS06835 and A4249_RS06840 are separated by 90 nucleotides
A4249_RS06830: A4249_RS06830 - chorismate mutase, at 1,390,503 to 1,391,225
_RS06830
A4249_RS06835: A4249_RS06835 - prephenate dehydratase domain-containing protein, at 1,391,546 to 1,392,121
_RS06835
A4249_RS06840: A4249_RS06840 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,392,212 to 1,393,582
_RS06840
Position (kb)
1391
1392
1393 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1390.900 kb on + strand, within A4249_RS06830 at 1390.900 kb on + strand, within A4249_RS06830 at 1390.900 kb on + strand, within A4249_RS06830 at 1390.900 kb on + strand, within A4249_RS06830 at 1390.901 kb on - strand, within A4249_RS06830 at 1390.901 kb on - strand, within A4249_RS06830 at 1390.901 kb on - strand, within A4249_RS06830 at 1390.901 kb on - strand, within A4249_RS06830 at 1391.252 kb on + strand at 1391.252 kb on + strand at 1391.253 kb on - strand at 1391.253 kb on - strand at 1391.294 kb on - strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.307 kb on + strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.308 kb on - strand at 1391.393 kb on + strand at 1391.412 kb on - strand at 1391.412 kb on - strand at 1391.522 kb on + strand at 1391.523 kb on - strand at 1391.631 kb on + strand, within A4249_RS06835 at 1391.631 kb on + strand, within A4249_RS06835 at 1391.631 kb on + strand, within A4249_RS06835 at 1391.631 kb on + strand, within A4249_RS06835 at 1391.631 kb on + strand, within A4249_RS06835 at 1391.632 kb on - strand, within A4249_RS06835 at 1391.632 kb on - strand, within A4249_RS06835 at 1391.942 kb on + strand, within A4249_RS06835 at 1392.075 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.113 kb on + strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.114 kb on - strand at 1392.213 kb on + strand at 1393.108 kb on + strand, within A4249_RS06840 at 1393.111 kb on - strand, within A4249_RS06840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 30C remove 1,390,900 + A4249_RS06830 0.55 -3.5 1,390,900 + A4249_RS06830 0.55 +0.2 1,390,900 + A4249_RS06830 0.55 -2.6 1,390,900 + A4249_RS06830 0.55 +0.2 1,390,901 - A4249_RS06830 0.55 -4.3 1,390,901 - A4249_RS06830 0.55 -4.7 1,390,901 - A4249_RS06830 0.55 -2.1 1,390,901 - A4249_RS06830 0.55 -1.3 1,391,252 + -1.5 1,391,252 + -3.1 1,391,253 - +0.2 1,391,253 - -1.1 1,391,294 - -1.5 1,391,307 + +0.5 1,391,307 + +0.4 1,391,307 + -1.9 1,391,307 + -2.1 1,391,307 + -0.5 1,391,307 + -0.6 1,391,307 + -0.0 1,391,307 + -0.2 1,391,307 + +0.7 1,391,307 + +0.2 1,391,308 - -0.4 1,391,308 - -2.1 1,391,308 - -0.8 1,391,308 - +0.2 1,391,308 - -0.8 1,391,308 - +0.6 1,391,308 - -0.8 1,391,308 - +1.9 1,391,308 - +1.2 1,391,308 - +0.7 1,391,308 - +1.2 1,391,308 - +0.2 1,391,308 - -0.1 1,391,393 + +1.9 1,391,412 - -0.9 1,391,412 - +1.6 1,391,522 + -1.2 1,391,523 - -0.2 1,391,631 + A4249_RS06835 0.15 -3.5 1,391,631 + A4249_RS06835 0.15 -1.3 1,391,631 + A4249_RS06835 0.15 -1.8 1,391,631 + A4249_RS06835 0.15 -2.6 1,391,631 + A4249_RS06835 0.15 +0.2 1,391,632 - A4249_RS06835 0.15 -4.4 1,391,632 - A4249_RS06835 0.15 -0.8 1,391,942 + A4249_RS06835 0.69 -3.5 1,392,075 + -3.8 1,392,113 + +0.7 1,392,113 + +0.9 1,392,113 + -1.0 1,392,113 + +0.6 1,392,113 + -0.8 1,392,113 + -0.7 1,392,113 + -0.8 1,392,113 + +0.8 1,392,113 + +1.8 1,392,114 - +0.3 1,392,114 - -2.1 1,392,114 - -5.2 1,392,114 - -0.2 1,392,114 - -1.8 1,392,114 - +1.8 1,392,114 - +0.2 1,392,213 + +0.2 1,393,108 + A4249_RS06840 0.65 -2.1 1,393,111 - A4249_RS06840 0.66 -2.1
Or see this region's nucleotide sequence