Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06825

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06815 and A4249_RS06820 are separated by 129 nucleotidesA4249_RS06820 and A4249_RS06825 are separated by 75 nucleotidesA4249_RS06825 and A4249_RS06830 are separated by 44 nucleotides A4249_RS06815: A4249_RS06815 - division plane positioning ATPase MipZ, at 1,387,897 to 1,388,733 _RS06815 A4249_RS06820: A4249_RS06820 - SPOR domain-containing protein, at 1,388,863 to 1,389,522 _RS06820 A4249_RS06825: A4249_RS06825 - pantoate--beta-alanine ligase, at 1,389,598 to 1,390,458 _RS06825 A4249_RS06830: A4249_RS06830 - chorismate mutase, at 1,390,503 to 1,391,225 _RS06830 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1388.781 kb on + strandat 1388.782 kb on - strandat 1388.782 kb on - strandat 1388.782 kb on - strandat 1388.782 kb on - strandat 1388.990 kb on + strand, within A4249_RS06820at 1388.990 kb on + strand, within A4249_RS06820at 1388.990 kb on + strand, within A4249_RS06820at 1388.991 kb on - strand, within A4249_RS06820at 1388.991 kb on - strand, within A4249_RS06820at 1389.021 kb on + strand, within A4249_RS06820at 1389.021 kb on + strand, within A4249_RS06820at 1389.021 kb on + strand, within A4249_RS06820at 1389.021 kb on + strand, within A4249_RS06820at 1389.022 kb on - strand, within A4249_RS06820at 1389.022 kb on - strand, within A4249_RS06820at 1389.022 kb on - strand, within A4249_RS06820at 1389.069 kb on - strand, within A4249_RS06820at 1389.069 kb on - strand, within A4249_RS06820at 1389.069 kb on - strand, within A4249_RS06820at 1389.069 kb on - strand, within A4249_RS06820at 1389.199 kb on + strand, within A4249_RS06820at 1389.199 kb on + strand, within A4249_RS06820at 1389.200 kb on - strand, within A4249_RS06820at 1389.200 kb on - strand, within A4249_RS06820at 1389.200 kb on - strand, within A4249_RS06820at 1389.463 kb on + strandat 1389.463 kb on + strandat 1389.464 kb on - strandat 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.573 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.447 kb on - strandat 1390.498 kb on + strandat 1390.498 kb on + strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1391.252 kb on + strandat 1391.252 kb on + strandat 1391.253 kb on - strandat 1391.253 kb on - strandat 1391.294 kb on - strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.393 kb on + strandat 1391.412 kb on - strandat 1391.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,388,781 + -1.6
1,388,782 - +0.5
1,388,782 - -1.6
1,388,782 - -1.5
1,388,782 - -0.6
1,388,990 + A4249_RS06820 0.19 -0.4
1,388,990 + A4249_RS06820 0.19 -0.3
1,388,990 + A4249_RS06820 0.19 -0.1
1,388,991 - A4249_RS06820 0.19 +1.0
1,388,991 - A4249_RS06820 0.19 -1.7
1,389,021 + A4249_RS06820 0.24 -0.4
1,389,021 + A4249_RS06820 0.24 +0.0
1,389,021 + A4249_RS06820 0.24 +0.7
1,389,021 + A4249_RS06820 0.24 -2.9
1,389,022 - A4249_RS06820 0.24 -1.0
1,389,022 - A4249_RS06820 0.24 -1.1
1,389,022 - A4249_RS06820 0.24 +0.7
1,389,069 - A4249_RS06820 0.31 +1.1
1,389,069 - A4249_RS06820 0.31 +0.8
1,389,069 - A4249_RS06820 0.31 -1.1
1,389,069 - A4249_RS06820 0.31 +1.2
1,389,199 + A4249_RS06820 0.51 -0.9
1,389,199 + A4249_RS06820 0.51 -0.2
1,389,200 - A4249_RS06820 0.51 -0.8
1,389,200 - A4249_RS06820 0.51 +1.4
1,389,200 - A4249_RS06820 0.51 +0.6
1,389,463 + +0.0
1,389,463 + +0.4
1,389,464 - -0.7
1,389,522 + -0.8
1,389,522 + +0.7
1,389,522 + -2.2
1,389,522 + +0.0
1,389,523 - -0.5
1,389,523 - -1.8
1,389,523 - +0.6
1,389,523 - -1.3
1,389,523 - -0.5
1,389,523 - -1.1
1,389,534 + -1.2
1,389,534 + +0.1
1,389,534 + +0.2
1,389,534 + +1.8
1,389,534 + +0.1
1,389,534 + +0.2
1,389,534 + -0.5
1,389,535 - +0.6
1,389,535 - -0.7
1,389,535 - -0.8
1,389,535 - +0.9
1,389,535 - -1.8
1,389,535 - +0.4
1,389,535 - +0.9
1,389,535 - -0.1
1,389,535 - -0.8
1,389,573 - -0.3
1,389,603 - -1.3
1,389,603 - +0.9
1,389,603 - -0.2
1,389,603 - +0.2
1,389,603 - +0.1
1,390,446 + -1.8
1,390,446 + -1.2
1,390,446 + -1.3
1,390,446 + -1.5
1,390,446 + -0.5
1,390,446 + +0.6
1,390,446 + +0.5
1,390,446 + +0.1
1,390,446 + +1.4
1,390,447 - -1.3
1,390,498 + +0.1
1,390,498 + -2.1
1,390,499 - -0.3
1,390,499 - +0.0
1,390,499 - -2.8
1,390,499 - +0.1
1,390,499 - +2.6
1,390,499 - -0.5
1,390,900 + A4249_RS06830 0.55 -3.5
1,390,900 + A4249_RS06830 0.55 +0.2
1,390,900 + A4249_RS06830 0.55 -2.6
1,390,900 + A4249_RS06830 0.55 +0.2
1,390,901 - A4249_RS06830 0.55 -4.3
1,390,901 - A4249_RS06830 0.55 -4.7
1,390,901 - A4249_RS06830 0.55 -2.1
1,390,901 - A4249_RS06830 0.55 -1.3
1,391,252 + -1.5
1,391,252 + -3.1
1,391,253 - +0.2
1,391,253 - -1.1
1,391,294 - -1.5
1,391,307 + +0.5
1,391,307 + +0.4
1,391,307 + -1.9
1,391,307 + -2.1
1,391,307 + -0.5
1,391,307 + -0.6
1,391,307 + -0.0
1,391,307 + -0.2
1,391,307 + +0.7
1,391,307 + +0.2
1,391,308 - -0.4
1,391,308 - -2.1
1,391,308 - -0.8
1,391,308 - +0.2
1,391,308 - -0.8
1,391,308 - +0.6
1,391,308 - -0.8
1,391,308 - +1.9
1,391,308 - +1.2
1,391,308 - +0.7
1,391,308 - +1.2
1,391,308 - +0.2
1,391,308 - -0.1
1,391,393 + +1.9
1,391,412 - -0.9
1,391,412 - +1.6

Or see this region's nucleotide sequence