Experiment: D-Glucose (C); 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS05755 and A4249_RS16515 are separated by 363 nucleotides A4249_RS16515 and A4249_RS05765 are separated by 37 nucleotides A4249_RS05765 and A4249_RS05770 overlap by 4 nucleotides
A4249_RS05755: A4249_RS05755 - hypothetical protein, at 1,179,313 to 1,179,645
_RS05755
A4249_RS16515: A4249_RS16515 - hypothetical protein, at 1,180,009 to 1,180,494
_RS16515
A4249_RS05765: A4249_RS05765 - TolC family protein, at 1,180,532 to 1,181,803
_RS05765
A4249_RS05770: A4249_RS05770 - efflux RND transporter periplasmic adaptor subunit, at 1,181,800 to 1,183,065
_RS05770
Position (kb)
1180
1181
1182 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1179.693 kb on + strand at 1179.693 kb on + strand at 1179.694 kb on - strand at 1179.740 kb on + strand at 1179.752 kb on + strand at 1179.753 kb on - strand at 1179.805 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.858 kb on + strand at 1179.887 kb on + strand at 1179.887 kb on + strand at 1179.887 kb on + strand at 1179.901 kb on + strand at 1179.902 kb on - strand at 1179.925 kb on + strand at 1179.926 kb on - strand at 1179.986 kb on + strand at 1179.987 kb on - strand at 1179.987 kb on - strand at 1179.987 kb on - strand at 1179.987 kb on - strand at 1179.987 kb on - strand at 1180.005 kb on + strand at 1180.005 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.010 kb on + strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.011 kb on - strand at 1180.059 kb on + strand, within A4249_RS16515 at 1180.138 kb on + strand, within A4249_RS16515 at 1180.138 kb on + strand, within A4249_RS16515 at 1180.139 kb on - strand, within A4249_RS16515 at 1180.139 kb on - strand, within A4249_RS16515 at 1180.139 kb on - strand, within A4249_RS16515 at 1180.139 kb on - strand, within A4249_RS16515 at 1180.330 kb on + strand, within A4249_RS16515 at 1180.331 kb on - strand, within A4249_RS16515 at 1180.331 kb on - strand, within A4249_RS16515 at 1180.331 kb on - strand, within A4249_RS16515 at 1180.331 kb on - strand, within A4249_RS16515 at 1180.485 kb on + strand at 1180.485 kb on + strand at 1180.485 kb on + strand at 1180.485 kb on + strand at 1180.485 kb on + strand at 1180.486 kb on - strand at 1180.486 kb on - strand at 1180.486 kb on - strand at 1180.486 kb on - strand at 1180.566 kb on + strand at 1180.567 kb on - strand at 1180.567 kb on - strand at 1180.832 kb on + strand, within A4249_RS05765 at 1180.832 kb on + strand, within A4249_RS05765 at 1180.832 kb on + strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1180.833 kb on - strand, within A4249_RS05765 at 1181.177 kb on + strand, within A4249_RS05765 at 1181.177 kb on + strand, within A4249_RS05765 at 1181.177 kb on + strand, within A4249_RS05765 at 1181.178 kb on - strand, within A4249_RS05765 at 1181.178 kb on - strand, within A4249_RS05765 at 1181.178 kb on - strand, within A4249_RS05765 at 1181.178 kb on - strand, within A4249_RS05765 at 1181.178 kb on - strand, within A4249_RS05765 at 1181.654 kb on + strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.655 kb on - strand, within A4249_RS05765 at 1181.830 kb on + strand at 1181.830 kb on + strand at 1181.831 kb on - strand at 1181.935 kb on + strand, within A4249_RS05770 at 1181.935 kb on + strand, within A4249_RS05770 at 1181.936 kb on - strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.001 kb on + strand, within A4249_RS05770 at 1182.002 kb on - strand, within A4249_RS05770 at 1182.034 kb on + strand, within A4249_RS05770 at 1182.035 kb on - strand, within A4249_RS05770 at 1182.035 kb on - strand, within A4249_RS05770 at 1182.035 kb on - strand, within A4249_RS05770 at 1182.035 kb on - strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.040 kb on + strand, within A4249_RS05770 at 1182.041 kb on - strand, within A4249_RS05770 at 1182.041 kb on - strand, within A4249_RS05770 at 1182.168 kb on - strand, within A4249_RS05770 at 1182.168 kb on - strand, within A4249_RS05770 at 1182.235 kb on + strand, within A4249_RS05770 at 1182.235 kb on + strand, within A4249_RS05770 at 1182.235 kb on + strand, within A4249_RS05770 at 1182.235 kb on + strand, within A4249_RS05770 at 1182.236 kb on - strand, within A4249_RS05770 at 1182.236 kb on - strand, within A4249_RS05770 at 1182.236 kb on - strand, within A4249_RS05770 at 1182.236 kb on - strand, within A4249_RS05770 at 1182.245 kb on - strand, within A4249_RS05770 at 1182.245 kb on - strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.493 kb on + strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.494 kb on - strand, within A4249_RS05770 at 1182.556 kb on - strand, within A4249_RS05770
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 30C remove 1,179,693 + +0.6 1,179,693 + -0.8 1,179,694 - +0.5 1,179,740 + +0.2 1,179,752 + -0.1 1,179,753 - -2.0 1,179,805 + -3.0 1,179,858 + -0.6 1,179,858 + -0.6 1,179,858 + +0.2 1,179,858 + -1.4 1,179,858 + -0.8 1,179,858 + -0.0 1,179,858 + +2.5 1,179,858 + -0.8 1,179,858 + -2.1 1,179,858 + -0.5 1,179,887 + -2.8 1,179,887 + -0.5 1,179,887 + -1.4 1,179,901 + -1.1 1,179,902 - +0.5 1,179,925 + +0.5 1,179,926 - +0.4 1,179,986 + -0.8 1,179,987 - +0.2 1,179,987 - -1.6 1,179,987 - -1.8 1,179,987 - +2.2 1,179,987 - -0.8 1,180,005 + -0.3 1,180,005 + -2.4 1,180,010 + -0.8 1,180,010 + +0.2 1,180,010 + -2.4 1,180,010 + -0.1 1,180,010 + -2.8 1,180,010 + +0.5 1,180,010 + +0.4 1,180,010 + +2.4 1,180,010 + +1.4 1,180,010 + +0.8 1,180,010 + +0.6 1,180,010 + -0.4 1,180,011 - -0.4 1,180,011 - -1.7 1,180,011 - -1.8 1,180,011 - -0.1 1,180,011 - -0.8 1,180,011 - +0.2 1,180,011 - -0.5 1,180,011 - +1.5 1,180,011 - +0.7 1,180,011 - +0.2 1,180,011 - +2.0 1,180,059 + A4249_RS16515 0.10 +2.2 1,180,138 + A4249_RS16515 0.27 +0.2 1,180,138 + A4249_RS16515 0.27 -0.9 1,180,139 - A4249_RS16515 0.27 -1.0 1,180,139 - A4249_RS16515 0.27 +1.1 1,180,139 - A4249_RS16515 0.27 -0.5 1,180,139 - A4249_RS16515 0.27 +1.5 1,180,330 + A4249_RS16515 0.66 +0.2 1,180,331 - A4249_RS16515 0.66 -0.5 1,180,331 - A4249_RS16515 0.66 -0.1 1,180,331 - A4249_RS16515 0.66 +1.2 1,180,331 - A4249_RS16515 0.66 +0.1 1,180,485 + -0.0 1,180,485 + +0.8 1,180,485 + +0.0 1,180,485 + +0.6 1,180,485 + -0.5 1,180,486 - -0.2 1,180,486 - +0.4 1,180,486 - -0.2 1,180,486 - -0.2 1,180,566 + -0.0 1,180,567 - -2.1 1,180,567 - -0.5 1,180,832 + A4249_RS05765 0.24 -1.2 1,180,832 + A4249_RS05765 0.24 +0.2 1,180,832 + A4249_RS05765 0.24 +0.5 1,180,833 - A4249_RS05765 0.24 +0.2 1,180,833 - A4249_RS05765 0.24 +0.8 1,180,833 - A4249_RS05765 0.24 -0.5 1,180,833 - A4249_RS05765 0.24 +0.2 1,180,833 - A4249_RS05765 0.24 -0.4 1,180,833 - A4249_RS05765 0.24 -0.3 1,180,833 - A4249_RS05765 0.24 -0.5 1,180,833 - A4249_RS05765 0.24 +0.1 1,181,177 + A4249_RS05765 0.51 +0.2 1,181,177 + A4249_RS05765 0.51 -0.4 1,181,177 + A4249_RS05765 0.51 +0.1 1,181,178 - A4249_RS05765 0.51 +2.2 1,181,178 - A4249_RS05765 0.51 +1.5 1,181,178 - A4249_RS05765 0.51 +0.5 1,181,178 - A4249_RS05765 0.51 +0.2 1,181,178 - A4249_RS05765 0.51 +1.9 1,181,654 + A4249_RS05765 0.88 -0.1 1,181,655 - A4249_RS05765 0.88 +0.8 1,181,655 - A4249_RS05765 0.88 -1.8 1,181,655 - A4249_RS05765 0.88 +0.8 1,181,655 - A4249_RS05765 0.88 -1.1 1,181,655 - A4249_RS05765 0.88 +0.4 1,181,655 - A4249_RS05765 0.88 +1.9 1,181,655 - A4249_RS05765 0.88 +0.4 1,181,655 - A4249_RS05765 0.88 +2.8 1,181,655 - A4249_RS05765 0.88 +0.2 1,181,830 + -0.5 1,181,830 + +0.2 1,181,831 - -0.8 1,181,935 + A4249_RS05770 0.11 +0.2 1,181,935 + A4249_RS05770 0.11 -2.0 1,181,936 - A4249_RS05770 0.11 -1.8 1,182,001 + A4249_RS05770 0.16 +1.8 1,182,001 + A4249_RS05770 0.16 +0.2 1,182,001 + A4249_RS05770 0.16 +1.3 1,182,001 + A4249_RS05770 0.16 -0.1 1,182,001 + A4249_RS05770 0.16 +0.8 1,182,001 + A4249_RS05770 0.16 -1.1 1,182,001 + A4249_RS05770 0.16 -1.4 1,182,002 - A4249_RS05770 0.16 +0.2 1,182,034 + A4249_RS05770 0.18 +0.0 1,182,035 - A4249_RS05770 0.19 +0.9 1,182,035 - A4249_RS05770 0.19 -0.2 1,182,035 - A4249_RS05770 0.19 -0.1 1,182,035 - A4249_RS05770 0.19 +0.2 1,182,040 + A4249_RS05770 0.19 +1.8 1,182,040 + A4249_RS05770 0.19 -0.3 1,182,040 + A4249_RS05770 0.19 -0.4 1,182,040 + A4249_RS05770 0.19 +0.2 1,182,040 + A4249_RS05770 0.19 +0.7 1,182,040 + A4249_RS05770 0.19 +2.8 1,182,041 - A4249_RS05770 0.19 -0.4 1,182,041 - A4249_RS05770 0.19 -1.0 1,182,168 - A4249_RS05770 0.29 -1.8 1,182,168 - A4249_RS05770 0.29 +0.0 1,182,235 + A4249_RS05770 0.34 +1.8 1,182,235 + A4249_RS05770 0.34 +0.4 1,182,235 + A4249_RS05770 0.34 -1.8 1,182,235 + A4249_RS05770 0.34 -2.1 1,182,236 - A4249_RS05770 0.34 +0.2 1,182,236 - A4249_RS05770 0.34 -0.7 1,182,236 - A4249_RS05770 0.34 -1.7 1,182,236 - A4249_RS05770 0.34 -0.8 1,182,245 - A4249_RS05770 0.35 +0.2 1,182,245 - A4249_RS05770 0.35 -1.1 1,182,493 + A4249_RS05770 0.55 -2.6 1,182,493 + A4249_RS05770 0.55 -2.6 1,182,493 + A4249_RS05770 0.55 -0.5 1,182,493 + A4249_RS05770 0.55 +0.9 1,182,493 + A4249_RS05770 0.55 -0.1 1,182,493 + A4249_RS05770 0.55 -1.4 1,182,493 + A4249_RS05770 0.55 +0.2 1,182,494 - A4249_RS05770 0.55 -1.4 1,182,494 - A4249_RS05770 0.55 +0.9 1,182,494 - A4249_RS05770 0.55 +0.5 1,182,494 - A4249_RS05770 0.55 -2.1 1,182,494 - A4249_RS05770 0.55 +0.4 1,182,494 - A4249_RS05770 0.55 -2.0 1,182,494 - A4249_RS05770 0.55 -2.1 1,182,494 - A4249_RS05770 0.55 -3.1 1,182,556 - A4249_RS05770 0.60 +0.8
Or see this region's nucleotide sequence