Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05765

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05755 and A4249_RS16515 are separated by 363 nucleotidesA4249_RS16515 and A4249_RS05765 are separated by 37 nucleotidesA4249_RS05765 and A4249_RS05770 overlap by 4 nucleotides A4249_RS05755: A4249_RS05755 - hypothetical protein, at 1,179,313 to 1,179,645 _RS05755 A4249_RS16515: A4249_RS16515 - hypothetical protein, at 1,180,009 to 1,180,494 _RS16515 A4249_RS05765: A4249_RS05765 - TolC family protein, at 1,180,532 to 1,181,803 _RS05765 A4249_RS05770: A4249_RS05770 - efflux RND transporter periplasmic adaptor subunit, at 1,181,800 to 1,183,065 _RS05770 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1179.693 kb on + strandat 1179.693 kb on + strandat 1179.694 kb on - strandat 1179.740 kb on + strandat 1179.752 kb on + strandat 1179.753 kb on - strandat 1179.805 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.858 kb on + strandat 1179.887 kb on + strandat 1179.887 kb on + strandat 1179.887 kb on + strandat 1179.901 kb on + strandat 1179.902 kb on - strandat 1179.925 kb on + strandat 1179.926 kb on - strandat 1179.986 kb on + strandat 1179.987 kb on - strandat 1179.987 kb on - strandat 1179.987 kb on - strandat 1179.987 kb on - strandat 1179.987 kb on - strandat 1180.005 kb on + strandat 1180.005 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.010 kb on + strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.011 kb on - strandat 1180.059 kb on + strand, within A4249_RS16515at 1180.138 kb on + strand, within A4249_RS16515at 1180.138 kb on + strand, within A4249_RS16515at 1180.139 kb on - strand, within A4249_RS16515at 1180.139 kb on - strand, within A4249_RS16515at 1180.139 kb on - strand, within A4249_RS16515at 1180.139 kb on - strand, within A4249_RS16515at 1180.330 kb on + strand, within A4249_RS16515at 1180.331 kb on - strand, within A4249_RS16515at 1180.331 kb on - strand, within A4249_RS16515at 1180.331 kb on - strand, within A4249_RS16515at 1180.331 kb on - strand, within A4249_RS16515at 1180.485 kb on + strandat 1180.485 kb on + strandat 1180.485 kb on + strandat 1180.485 kb on + strandat 1180.485 kb on + strandat 1180.486 kb on - strandat 1180.486 kb on - strandat 1180.486 kb on - strandat 1180.486 kb on - strandat 1180.566 kb on + strandat 1180.567 kb on - strandat 1180.567 kb on - strandat 1180.832 kb on + strand, within A4249_RS05765at 1180.832 kb on + strand, within A4249_RS05765at 1180.832 kb on + strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1180.833 kb on - strand, within A4249_RS05765at 1181.177 kb on + strand, within A4249_RS05765at 1181.177 kb on + strand, within A4249_RS05765at 1181.177 kb on + strand, within A4249_RS05765at 1181.178 kb on - strand, within A4249_RS05765at 1181.178 kb on - strand, within A4249_RS05765at 1181.178 kb on - strand, within A4249_RS05765at 1181.178 kb on - strand, within A4249_RS05765at 1181.178 kb on - strand, within A4249_RS05765at 1181.654 kb on + strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.655 kb on - strand, within A4249_RS05765at 1181.830 kb on + strandat 1181.830 kb on + strandat 1181.831 kb on - strandat 1181.935 kb on + strand, within A4249_RS05770at 1181.935 kb on + strand, within A4249_RS05770at 1181.936 kb on - strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.001 kb on + strand, within A4249_RS05770at 1182.002 kb on - strand, within A4249_RS05770at 1182.034 kb on + strand, within A4249_RS05770at 1182.035 kb on - strand, within A4249_RS05770at 1182.035 kb on - strand, within A4249_RS05770at 1182.035 kb on - strand, within A4249_RS05770at 1182.035 kb on - strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.040 kb on + strand, within A4249_RS05770at 1182.041 kb on - strand, within A4249_RS05770at 1182.041 kb on - strand, within A4249_RS05770at 1182.168 kb on - strand, within A4249_RS05770at 1182.168 kb on - strand, within A4249_RS05770at 1182.235 kb on + strand, within A4249_RS05770at 1182.235 kb on + strand, within A4249_RS05770at 1182.235 kb on + strand, within A4249_RS05770at 1182.235 kb on + strand, within A4249_RS05770at 1182.236 kb on - strand, within A4249_RS05770at 1182.236 kb on - strand, within A4249_RS05770at 1182.236 kb on - strand, within A4249_RS05770at 1182.236 kb on - strand, within A4249_RS05770at 1182.245 kb on - strand, within A4249_RS05770at 1182.245 kb on - strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.493 kb on + strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.494 kb on - strand, within A4249_RS05770at 1182.556 kb on - strand, within A4249_RS05770

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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1,179,693 + +0.6
1,179,693 + -0.8
1,179,694 - +0.5
1,179,740 + +0.2
1,179,752 + -0.1
1,179,753 - -2.0
1,179,805 + -3.0
1,179,858 + -0.6
1,179,858 + -0.6
1,179,858 + +0.2
1,179,858 + -1.4
1,179,858 + -0.8
1,179,858 + -0.0
1,179,858 + +2.5
1,179,858 + -0.8
1,179,858 + -2.1
1,179,858 + -0.5
1,179,887 + -2.8
1,179,887 + -0.5
1,179,887 + -1.4
1,179,901 + -1.1
1,179,902 - +0.5
1,179,925 + +0.5
1,179,926 - +0.4
1,179,986 + -0.8
1,179,987 - +0.2
1,179,987 - -1.6
1,179,987 - -1.8
1,179,987 - +2.2
1,179,987 - -0.8
1,180,005 + -0.3
1,180,005 + -2.4
1,180,010 + -0.8
1,180,010 + +0.2
1,180,010 + -2.4
1,180,010 + -0.1
1,180,010 + -2.8
1,180,010 + +0.5
1,180,010 + +0.4
1,180,010 + +2.4
1,180,010 + +1.4
1,180,010 + +0.8
1,180,010 + +0.6
1,180,010 + -0.4
1,180,011 - -0.4
1,180,011 - -1.7
1,180,011 - -1.8
1,180,011 - -0.1
1,180,011 - -0.8
1,180,011 - +0.2
1,180,011 - -0.5
1,180,011 - +1.5
1,180,011 - +0.7
1,180,011 - +0.2
1,180,011 - +2.0
1,180,059 + A4249_RS16515 0.10 +2.2
1,180,138 + A4249_RS16515 0.27 +0.2
1,180,138 + A4249_RS16515 0.27 -0.9
1,180,139 - A4249_RS16515 0.27 -1.0
1,180,139 - A4249_RS16515 0.27 +1.1
1,180,139 - A4249_RS16515 0.27 -0.5
1,180,139 - A4249_RS16515 0.27 +1.5
1,180,330 + A4249_RS16515 0.66 +0.2
1,180,331 - A4249_RS16515 0.66 -0.5
1,180,331 - A4249_RS16515 0.66 -0.1
1,180,331 - A4249_RS16515 0.66 +1.2
1,180,331 - A4249_RS16515 0.66 +0.1
1,180,485 + -0.0
1,180,485 + +0.8
1,180,485 + +0.0
1,180,485 + +0.6
1,180,485 + -0.5
1,180,486 - -0.2
1,180,486 - +0.4
1,180,486 - -0.2
1,180,486 - -0.2
1,180,566 + -0.0
1,180,567 - -2.1
1,180,567 - -0.5
1,180,832 + A4249_RS05765 0.24 -1.2
1,180,832 + A4249_RS05765 0.24 +0.2
1,180,832 + A4249_RS05765 0.24 +0.5
1,180,833 - A4249_RS05765 0.24 +0.2
1,180,833 - A4249_RS05765 0.24 +0.8
1,180,833 - A4249_RS05765 0.24 -0.5
1,180,833 - A4249_RS05765 0.24 +0.2
1,180,833 - A4249_RS05765 0.24 -0.4
1,180,833 - A4249_RS05765 0.24 -0.3
1,180,833 - A4249_RS05765 0.24 -0.5
1,180,833 - A4249_RS05765 0.24 +0.1
1,181,177 + A4249_RS05765 0.51 +0.2
1,181,177 + A4249_RS05765 0.51 -0.4
1,181,177 + A4249_RS05765 0.51 +0.1
1,181,178 - A4249_RS05765 0.51 +2.2
1,181,178 - A4249_RS05765 0.51 +1.5
1,181,178 - A4249_RS05765 0.51 +0.5
1,181,178 - A4249_RS05765 0.51 +0.2
1,181,178 - A4249_RS05765 0.51 +1.9
1,181,654 + A4249_RS05765 0.88 -0.1
1,181,655 - A4249_RS05765 0.88 +0.8
1,181,655 - A4249_RS05765 0.88 -1.8
1,181,655 - A4249_RS05765 0.88 +0.8
1,181,655 - A4249_RS05765 0.88 -1.1
1,181,655 - A4249_RS05765 0.88 +0.4
1,181,655 - A4249_RS05765 0.88 +1.9
1,181,655 - A4249_RS05765 0.88 +0.4
1,181,655 - A4249_RS05765 0.88 +2.8
1,181,655 - A4249_RS05765 0.88 +0.2
1,181,830 + -0.5
1,181,830 + +0.2
1,181,831 - -0.8
1,181,935 + A4249_RS05770 0.11 +0.2
1,181,935 + A4249_RS05770 0.11 -2.0
1,181,936 - A4249_RS05770 0.11 -1.8
1,182,001 + A4249_RS05770 0.16 +1.8
1,182,001 + A4249_RS05770 0.16 +0.2
1,182,001 + A4249_RS05770 0.16 +1.3
1,182,001 + A4249_RS05770 0.16 -0.1
1,182,001 + A4249_RS05770 0.16 +0.8
1,182,001 + A4249_RS05770 0.16 -1.1
1,182,001 + A4249_RS05770 0.16 -1.4
1,182,002 - A4249_RS05770 0.16 +0.2
1,182,034 + A4249_RS05770 0.18 +0.0
1,182,035 - A4249_RS05770 0.19 +0.9
1,182,035 - A4249_RS05770 0.19 -0.2
1,182,035 - A4249_RS05770 0.19 -0.1
1,182,035 - A4249_RS05770 0.19 +0.2
1,182,040 + A4249_RS05770 0.19 +1.8
1,182,040 + A4249_RS05770 0.19 -0.3
1,182,040 + A4249_RS05770 0.19 -0.4
1,182,040 + A4249_RS05770 0.19 +0.2
1,182,040 + A4249_RS05770 0.19 +0.7
1,182,040 + A4249_RS05770 0.19 +2.8
1,182,041 - A4249_RS05770 0.19 -0.4
1,182,041 - A4249_RS05770 0.19 -1.0
1,182,168 - A4249_RS05770 0.29 -1.8
1,182,168 - A4249_RS05770 0.29 +0.0
1,182,235 + A4249_RS05770 0.34 +1.8
1,182,235 + A4249_RS05770 0.34 +0.4
1,182,235 + A4249_RS05770 0.34 -1.8
1,182,235 + A4249_RS05770 0.34 -2.1
1,182,236 - A4249_RS05770 0.34 +0.2
1,182,236 - A4249_RS05770 0.34 -0.7
1,182,236 - A4249_RS05770 0.34 -1.7
1,182,236 - A4249_RS05770 0.34 -0.8
1,182,245 - A4249_RS05770 0.35 +0.2
1,182,245 - A4249_RS05770 0.35 -1.1
1,182,493 + A4249_RS05770 0.55 -2.6
1,182,493 + A4249_RS05770 0.55 -2.6
1,182,493 + A4249_RS05770 0.55 -0.5
1,182,493 + A4249_RS05770 0.55 +0.9
1,182,493 + A4249_RS05770 0.55 -0.1
1,182,493 + A4249_RS05770 0.55 -1.4
1,182,493 + A4249_RS05770 0.55 +0.2
1,182,494 - A4249_RS05770 0.55 -1.4
1,182,494 - A4249_RS05770 0.55 +0.9
1,182,494 - A4249_RS05770 0.55 +0.5
1,182,494 - A4249_RS05770 0.55 -2.1
1,182,494 - A4249_RS05770 0.55 +0.4
1,182,494 - A4249_RS05770 0.55 -2.0
1,182,494 - A4249_RS05770 0.55 -2.1
1,182,494 - A4249_RS05770 0.55 -3.1
1,182,556 - A4249_RS05770 0.60 +0.8

Or see this region's nucleotide sequence