Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04490

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04485 and A4249_RS04490 are separated by 618 nucleotidesA4249_RS04490 and A4249_RS04495 are separated by 59 nucleotidesA4249_RS04495 and A4249_RS04500 are separated by 171 nucleotides A4249_RS04485: A4249_RS04485 - phage holin family protein, at 931,811 to 932,167 _RS04485 A4249_RS04490: A4249_RS04490 - cobaltochelatase subunit CobS, at 932,786 to 933,790 _RS04490 A4249_RS04495: A4249_RS04495 - organic hydroperoxide resistance protein, at 933,850 to 934,278 _RS04495 A4249_RS04500: A4249_RS04500 - penicillin-binding protein 1A, at 934,450 to 936,828 _RS04500 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 931.797 kb on + strandat 931.798 kb on - strandat 931.798 kb on - strandat 931.798 kb on - strandat 931.798 kb on - strandat 931.843 kb on + strandat 931.844 kb on - strandat 931.984 kb on + strand, within A4249_RS04485at 931.985 kb on - strand, within A4249_RS04485at 932.166 kb on - strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.265 kb on + strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.266 kb on - strandat 932.268 kb on - strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.377 kb on + strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.378 kb on - strandat 932.415 kb on + strandat 932.415 kb on + strandat 932.415 kb on + strandat 932.415 kb on + strandat 932.416 kb on - strandat 932.416 kb on - strandat 932.472 kb on + strandat 932.472 kb on + strandat 932.473 kb on - strandat 932.473 kb on - strandat 932.473 kb on - strandat 932.473 kb on - strandat 932.559 kb on - strandat 932.559 kb on - strandat 932.607 kb on + strandat 932.608 kb on - strandat 932.760 kb on + strandat 932.760 kb on + strandat 932.760 kb on + strandat 932.760 kb on + strandat 932.761 kb on - strandat 932.761 kb on - strandat 932.761 kb on - strandat 932.781 kb on + strandat 932.781 kb on + strandat 932.781 kb on + strandat 932.782 kb on - strandat 932.782 kb on - strandat 932.782 kb on - strandat 932.788 kb on - strandat 932.788 kb on - strandat 932.844 kb on + strandat 932.844 kb on + strandat 932.844 kb on + strandat 932.915 kb on + strand, within A4249_RS04490at 932.915 kb on + strand, within A4249_RS04490at 932.915 kb on + strand, within A4249_RS04490at 933.121 kb on - strand, within A4249_RS04490at 933.348 kb on + strand, within A4249_RS04490at 933.348 kb on + strand, within A4249_RS04490at 933.348 kb on + strand, within A4249_RS04490at 933.348 kb on + strand, within A4249_RS04490at 933.637 kb on - strand, within A4249_RS04490at 933.801 kb on + strandat 933.801 kb on + strandat 933.802 kb on - strandat 933.802 kb on - strandat 933.802 kb on - strandat 933.802 kb on - strandat 933.802 kb on - strandat 933.802 kb on - strandat 933.851 kb on + strandat 933.879 kb on + strandat 933.899 kb on + strand, within A4249_RS04495at 933.899 kb on + strand, within A4249_RS04495at 933.900 kb on - strand, within A4249_RS04495at 933.900 kb on - strand, within A4249_RS04495at 933.900 kb on - strand, within A4249_RS04495at 934.100 kb on + strand, within A4249_RS04495at 934.100 kb on + strand, within A4249_RS04495at 934.100 kb on + strand, within A4249_RS04495at 934.101 kb on - strand, within A4249_RS04495at 934.101 kb on - strand, within A4249_RS04495at 934.113 kb on - strand, within A4249_RS04495at 934.317 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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931,797 + +0.3
931,798 - +0.8
931,798 - -0.4
931,798 - +0.2
931,798 - -0.8
931,843 + +0.2
931,844 - +0.2
931,984 + A4249_RS04485 0.48 +0.1
931,985 - A4249_RS04485 0.49 +0.7
932,166 - +1.2
932,265 + -1.8
932,265 + +0.2
932,265 + -1.4
932,265 + -1.1
932,265 + -0.1
932,265 + +1.5
932,265 + +0.4
932,265 + +0.5
932,265 + -0.9
932,265 + -1.4
932,265 + +0.2
932,265 + +0.5
932,265 + +0.3
932,265 + +1.5
932,265 + +1.5
932,265 + -1.4
932,266 - +0.9
932,266 - -1.4
932,266 - +1.8
932,266 - +2.0
932,266 - -1.1
932,266 - +0.1
932,266 - +2.2
932,266 - +1.9
932,266 - +1.6
932,266 - +2.8
932,266 - -2.1
932,266 - -1.1
932,266 - +0.3
932,266 - +0.1
932,266 - +0.8
932,268 - +0.9
932,377 + +0.4
932,377 + -1.1
932,377 + +1.2
932,377 + -0.8
932,377 + -1.2
932,377 + +1.9
932,377 + -2.1
932,377 + -0.8
932,377 + +0.4
932,378 - -2.3
932,378 - +0.2
932,378 - +0.2
932,378 - +0.9
932,378 - -2.8
932,378 - +0.1
932,378 - -0.7
932,378 - +0.2
932,378 - -1.6
932,415 + +2.2
932,415 + -0.3
932,415 + +2.0
932,415 + -0.5
932,416 - +0.2
932,416 - +3.6
932,472 + +0.2
932,472 + +1.6
932,473 - -0.5
932,473 - +0.5
932,473 - +0.3
932,473 - +0.1
932,559 - -1.2
932,559 - -0.2
932,607 + +1.2
932,608 - +0.0
932,760 + -0.3
932,760 + -1.0
932,760 + +0.3
932,760 + -3.1
932,761 - +1.2
932,761 - +0.2
932,761 - +0.7
932,781 + +1.2
932,781 + -0.5
932,781 + -0.6
932,782 - +0.8
932,782 - -0.5
932,782 - +0.1
932,788 - +1.2
932,788 - -0.9
932,844 + +1.5
932,844 + +0.2
932,844 + +0.2
932,915 + A4249_RS04490 0.13 +0.2
932,915 + A4249_RS04490 0.13 -1.4
932,915 + A4249_RS04490 0.13 -1.4
933,121 - A4249_RS04490 0.33 -0.4
933,348 + A4249_RS04490 0.56 -2.1
933,348 + A4249_RS04490 0.56 -1.8
933,348 + A4249_RS04490 0.56 -1.8
933,348 + A4249_RS04490 0.56 +0.2
933,637 - A4249_RS04490 0.85 -0.8
933,801 + -1.8
933,801 + -2.1
933,802 - +0.2
933,802 - -0.1
933,802 - +0.4
933,802 - +0.4
933,802 - +2.7
933,802 - +1.2
933,851 + +0.1
933,879 + -0.5
933,899 + A4249_RS04495 0.11 +0.9
933,899 + A4249_RS04495 0.11 +0.6
933,900 - A4249_RS04495 0.12 +0.4
933,900 - A4249_RS04495 0.12 -1.4
933,900 - A4249_RS04495 0.12 -0.1
934,100 + A4249_RS04495 0.58 -1.1
934,100 + A4249_RS04495 0.58 -2.1
934,100 + A4249_RS04495 0.58 -0.8
934,101 - A4249_RS04495 0.59 +0.5
934,101 - A4249_RS04495 0.59 -0.3
934,113 - A4249_RS04495 0.61 -0.4
934,317 + +0.2

Or see this region's nucleotide sequence