Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04465

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04455 and A4249_RS04460 are separated by 8 nucleotidesA4249_RS04460 and A4249_RS04465 are separated by 67 nucleotidesA4249_RS04465 and A4249_RS04470 overlap by 4 nucleotides A4249_RS04455: A4249_RS04455 - cytochrome o ubiquinol oxidase subunit III, at 927,633 to 928,256 _RS04455 A4249_RS04460: A4249_RS04460 - cytochrome o ubiquinol oxidase subunit IV, at 928,265 to 928,648 _RS04460 A4249_RS04465: A4249_RS04465 - SURF1 family protein, at 928,716 to 929,414 _RS04465 A4249_RS04470: A4249_RS04470 - ATP-binding protein, at 929,411 to 930,742 _RS04470 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 927.732 kb on + strand, within A4249_RS04455at 927.798 kb on + strand, within A4249_RS04455at 927.885 kb on + strand, within A4249_RS04455at 927.885 kb on + strand, within A4249_RS04455at 928.233 kb on + strandat 928.233 kb on + strandat 928.233 kb on + strandat 928.343 kb on + strand, within A4249_RS04460at 928.343 kb on + strand, within A4249_RS04460at 928.343 kb on + strand, within A4249_RS04460at 928.343 kb on + strand, within A4249_RS04460at 928.481 kb on + strand, within A4249_RS04460at 928.481 kb on + strand, within A4249_RS04460at 928.481 kb on + strand, within A4249_RS04460at 928.589 kb on + strand, within A4249_RS04460at 928.589 kb on + strand, within A4249_RS04460at 928.589 kb on + strand, within A4249_RS04460at 929.239 kb on - strand, within A4249_RS04465at 929.239 kb on - strand, within A4249_RS04465at 929.328 kb on + strand, within A4249_RS04465at 929.328 kb on + strand, within A4249_RS04465at 929.328 kb on + strand, within A4249_RS04465at 929.328 kb on + strand, within A4249_RS04465at 929.329 kb on - strand, within A4249_RS04465at 929.329 kb on - strand, within A4249_RS04465at 929.329 kb on - strand, within A4249_RS04465at 929.329 kb on - strand, within A4249_RS04465at 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.428 kb on - strandat 929.428 kb on - strandat 929.564 kb on + strand, within A4249_RS04470at 929.564 kb on + strand, within A4249_RS04470at 929.564 kb on + strand, within A4249_RS04470at 929.565 kb on - strand, within A4249_RS04470at 929.565 kb on - strand, within A4249_RS04470at 929.565 kb on - strand, within A4249_RS04470at 929.565 kb on - strand, within A4249_RS04470at 929.565 kb on - strand, within A4249_RS04470at 929.771 kb on + strand, within A4249_RS04470at 929.771 kb on + strand, within A4249_RS04470at 929.771 kb on + strand, within A4249_RS04470at 929.771 kb on + strand, within A4249_RS04470at 929.772 kb on - strand, within A4249_RS04470at 929.772 kb on - strand, within A4249_RS04470at 929.772 kb on - strand, within A4249_RS04470at 929.772 kb on - strand, within A4249_RS04470at 929.772 kb on - strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.816 kb on + strand, within A4249_RS04470at 929.817 kb on - strand, within A4249_RS04470at 929.817 kb on - strand, within A4249_RS04470at 929.817 kb on - strand, within A4249_RS04470at 929.924 kb on + strand, within A4249_RS04470at 929.924 kb on + strand, within A4249_RS04470at 929.924 kb on + strand, within A4249_RS04470at 929.925 kb on - strand, within A4249_RS04470at 929.925 kb on - strand, within A4249_RS04470at 930.061 kb on + strand, within A4249_RS04470at 930.061 kb on + strand, within A4249_RS04470at 930.061 kb on + strand, within A4249_RS04470at 930.061 kb on + strand, within A4249_RS04470at 930.061 kb on + strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470at 930.062 kb on - strand, within A4249_RS04470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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927,732 + A4249_RS04455 0.16 -0.5
927,798 + A4249_RS04455 0.26 +4.3
927,885 + A4249_RS04455 0.40 -0.1
927,885 + A4249_RS04455 0.40 +2.5
928,233 + +1.3
928,233 + +1.2
928,233 + +0.9
928,343 + A4249_RS04460 0.20 +1.4
928,343 + A4249_RS04460 0.20 +2.3
928,343 + A4249_RS04460 0.20 +1.6
928,343 + A4249_RS04460 0.20 +1.4
928,481 + A4249_RS04460 0.56 +0.5
928,481 + A4249_RS04460 0.56 +0.6
928,481 + A4249_RS04460 0.56 +4.3
928,589 + A4249_RS04460 0.84 +1.0
928,589 + A4249_RS04460 0.84 +2.0
928,589 + A4249_RS04460 0.84 +1.9
929,239 - A4249_RS04465 0.75 +0.9
929,239 - A4249_RS04465 0.75 +1.6
929,328 + A4249_RS04465 0.88 +0.5
929,328 + A4249_RS04465 0.88 -0.9
929,328 + A4249_RS04465 0.88 +0.4
929,328 + A4249_RS04465 0.88 +1.4
929,329 - A4249_RS04465 0.88 +0.9
929,329 - A4249_RS04465 0.88 +1.2
929,329 - A4249_RS04465 0.88 +1.1
929,329 - A4249_RS04465 0.88 +0.9
929,427 + -0.8
929,427 + -0.8
929,427 + -0.8
929,427 + -1.1
929,427 + -0.7
929,427 + +1.2
929,427 + +0.7
929,427 + +0.2
929,427 + +0.2
929,427 + +2.2
929,428 - +1.1
929,428 - +1.2
929,564 + A4249_RS04470 0.11 +0.5
929,564 + A4249_RS04470 0.11 -1.4
929,564 + A4249_RS04470 0.11 +0.1
929,565 - A4249_RS04470 0.12 +0.9
929,565 - A4249_RS04470 0.12 +1.6
929,565 - A4249_RS04470 0.12 +1.0
929,565 - A4249_RS04470 0.12 +1.0
929,565 - A4249_RS04470 0.12 +3.2
929,771 + A4249_RS04470 0.27 -0.5
929,771 + A4249_RS04470 0.27 +1.5
929,771 + A4249_RS04470 0.27 +1.1
929,771 + A4249_RS04470 0.27 -0.4
929,772 - A4249_RS04470 0.27 +3.2
929,772 - A4249_RS04470 0.27 +1.9
929,772 - A4249_RS04470 0.27 +0.1
929,772 - A4249_RS04470 0.27 +0.5
929,772 - A4249_RS04470 0.27 +1.3
929,816 + A4249_RS04470 0.30 +0.1
929,816 + A4249_RS04470 0.30 +1.2
929,816 + A4249_RS04470 0.30 +1.1
929,816 + A4249_RS04470 0.30 +0.4
929,816 + A4249_RS04470 0.30 +1.2
929,816 + A4249_RS04470 0.30 -1.7
929,817 - A4249_RS04470 0.30 +2.5
929,817 - A4249_RS04470 0.30 +1.2
929,817 - A4249_RS04470 0.30 +0.3
929,924 + A4249_RS04470 0.39 +0.5
929,924 + A4249_RS04470 0.39 +0.2
929,924 + A4249_RS04470 0.39 +0.5
929,925 - A4249_RS04470 0.39 +0.9
929,925 - A4249_RS04470 0.39 +0.1
930,061 + A4249_RS04470 0.49 +1.1
930,061 + A4249_RS04470 0.49 +0.3
930,061 + A4249_RS04470 0.49 -2.8
930,061 + A4249_RS04470 0.49 -0.6
930,061 + A4249_RS04470 0.49 -1.2
930,062 - A4249_RS04470 0.49 -0.6
930,062 - A4249_RS04470 0.49 +0.8
930,062 - A4249_RS04470 0.49 +0.4
930,062 - A4249_RS04470 0.49 +0.8
930,062 - A4249_RS04470 0.49 +0.5
930,062 - A4249_RS04470 0.49 -0.1

Or see this region's nucleotide sequence