Experiment: D-Glucose (C); 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04230 and A4249_RS04235 are separated by 138 nucleotides A4249_RS04235 and A4249_RS04240 overlap by 4 nucleotides A4249_RS04240 and A4249_RS04245 overlap by 4 nucleotides A4249_RS04245 and A4249_RS04250 are separated by 128 nucleotides
A4249_RS04230: A4249_RS04230 - type I DNA topoisomerase, at 876,800 to 879,406
_RS04230
A4249_RS04235: A4249_RS04235 - hypothetical protein, at 879,545 to 879,739
_RS04235
A4249_RS04240: A4249_RS04240 - DNA-processing protein DprA, at 879,736 to 880,809
_RS04240
A4249_RS04245: A4249_RS04245 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 880,806 to 881,444
_RS04245
A4249_RS04250: A4249_RS04250 - glycerophosphodiester phosphodiesterase family protein, at 881,573 to 882,505
_RS04250
Position (kb) 879
880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 879.596 kb on - strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.737 kb on + strand at 879.737 kb on + strand at 879.738 kb on - strand at 879.748 kb on + strand at 879.748 kb on + strand at 879.749 kb on - strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 880.147 kb on + strand, within A4249_RS04240 at 880.147 kb on + strand, within A4249_RS04240 at 880.147 kb on + strand, within A4249_RS04240 at 880.148 kb on - strand, within A4249_RS04240 at 880.265 kb on + strand, within A4249_RS04240 at 880.266 kb on - strand, within A4249_RS04240 at 880.266 kb on - strand, within A4249_RS04240 at 880.289 kb on + strand, within A4249_RS04240 at 880.289 kb on + strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.337 kb on - strand, within A4249_RS04240 at 880.563 kb on - strand, within A4249_RS04240 at 880.563 kb on - strand, within A4249_RS04240 at 880.636 kb on + strand, within A4249_RS04240 at 880.637 kb on - strand, within A4249_RS04240 at 881.433 kb on + strand at 881.433 kb on + strand at 881.433 kb on + strand at 881.434 kb on - strand at 881.434 kb on - strand at 881.434 kb on - strand at 881.582 kb on - strand at 881.684 kb on + strand, within A4249_RS04250 at 881.684 kb on + strand, within A4249_RS04250 at 881.685 kb on - strand, within A4249_RS04250 at 881.685 kb on - strand, within A4249_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 30C remove 879,596 - A4249_RS04235 0.26 -3.1 879,626 + A4249_RS04235 0.42 -0.7 879,626 + A4249_RS04235 0.42 -1.4 879,626 + A4249_RS04235 0.42 -1.1 879,626 + A4249_RS04235 0.42 +0.1 879,626 + A4249_RS04235 0.42 -1.1 879,626 + A4249_RS04235 0.42 -0.8 879,627 - A4249_RS04235 0.42 -0.5 879,627 - A4249_RS04235 0.42 -1.1 879,627 - A4249_RS04235 0.42 -1.4 879,627 - A4249_RS04235 0.42 -0.7 879,627 - A4249_RS04235 0.42 -1.3 879,627 - A4249_RS04235 0.42 -0.5 879,628 + A4249_RS04235 0.43 -0.3 879,628 + A4249_RS04235 0.43 +0.3 879,628 + A4249_RS04235 0.43 -0.1 879,628 + A4249_RS04235 0.43 -0.8 879,628 + A4249_RS04235 0.43 -0.4 879,629 - A4249_RS04235 0.43 -2.5 879,629 - A4249_RS04235 0.43 -2.1 879,629 - A4249_RS04235 0.43 -1.6 879,629 - A4249_RS04235 0.43 -1.7 879,629 - A4249_RS04235 0.43 +0.1 879,629 - A4249_RS04235 0.43 -0.9 879,629 - A4249_RS04235 0.43 -1.2 879,629 - A4249_RS04235 0.43 +2.2 879,629 - A4249_RS04235 0.43 +0.8 879,629 - A4249_RS04235 0.43 -0.2 879,629 - A4249_RS04235 0.43 -1.0 879,737 + -0.3 879,737 + -2.1 879,738 - -0.7 879,748 + -0.6 879,748 + -0.9 879,749 - -0.6 879,763 + +0.2 879,763 + +0.5 879,763 + +1.2 879,763 + -1.0 879,763 + +0.4 879,763 + -1.6 879,764 - -0.5 879,764 - -0.8 879,764 - -0.4 879,764 - -1.8 879,764 - -4.2 879,764 - -0.7 879,764 - -0.1 880,147 + A4249_RS04240 0.38 -1.8 880,147 + A4249_RS04240 0.38 -1.0 880,147 + A4249_RS04240 0.38 -0.0 880,148 - A4249_RS04240 0.38 +1.3 880,265 + A4249_RS04240 0.49 -2.1 880,266 - A4249_RS04240 0.49 -1.1 880,266 - A4249_RS04240 0.49 -1.5 880,289 + A4249_RS04240 0.51 -1.5 880,289 + A4249_RS04240 0.51 +0.2 880,290 - A4249_RS04240 0.52 -3.1 880,290 - A4249_RS04240 0.52 -0.5 880,290 - A4249_RS04240 0.52 +2.4 880,290 - A4249_RS04240 0.52 +0.8 880,290 - A4249_RS04240 0.52 +0.6 880,337 - A4249_RS04240 0.56 +0.3 880,563 - A4249_RS04240 0.77 +2.2 880,563 - A4249_RS04240 0.77 -0.3 880,636 + A4249_RS04240 0.84 -0.4 880,637 - A4249_RS04240 0.84 -1.4 881,433 + -2.1 881,433 + +0.2 881,433 + -0.9 881,434 - +1.2 881,434 - -0.1 881,434 - -0.4 881,582 - -0.1 881,684 + A4249_RS04250 0.12 -1.6 881,684 + A4249_RS04250 0.12 +2.6 881,685 - A4249_RS04250 0.12 -0.0 881,685 - A4249_RS04250 0.12 -2.1
Or see this region's nucleotide sequence