Experiment: D-Glucose (C); 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02420 and A4249_RS02425 are separated by 163 nucleotides A4249_RS02425 and A4249_RS02430 are separated by 2 nucleotides
A4249_RS02420: A4249_RS02420 - TonB-dependent receptor, at 516,942 to 518,975
_RS02420
A4249_RS02425: A4249_RS02425 - LL-diaminopimelate aminotransferase, at 519,139 to 520,347
_RS02425
A4249_RS02430: A4249_RS02430 - DUF808 domain-containing protein, at 520,350 to 521,294
_RS02430
Position (kb) 519
520
521 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 518.232 kb on + strand, within A4249_RS02420 at 518.232 kb on + strand, within A4249_RS02420 at 518.253 kb on + strand, within A4249_RS02420 at 518.253 kb on + strand, within A4249_RS02420 at 518.253 kb on + strand, within A4249_RS02420 at 518.254 kb on - strand, within A4249_RS02420 at 518.254 kb on - strand, within A4249_RS02420 at 518.254 kb on - strand, within A4249_RS02420 at 518.254 kb on - strand, within A4249_RS02420 at 518.354 kb on - strand, within A4249_RS02420 at 518.354 kb on - strand, within A4249_RS02420 at 518.754 kb on + strand, within A4249_RS02420 at 518.754 kb on + strand, within A4249_RS02420 at 518.754 kb on + strand, within A4249_RS02420 at 518.755 kb on - strand, within A4249_RS02420 at 518.755 kb on - strand, within A4249_RS02420 at 518.755 kb on - strand, within A4249_RS02420 at 518.970 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 519.086 kb on + strand at 519.094 kb on - strand at 519.155 kb on - strand at 519.155 kb on - strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.178 kb on + strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.179 kb on - strand at 519.331 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.379 kb on + strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.380 kb on - strand, within A4249_RS02425 at 519.382 kb on + strand, within A4249_RS02425 at 519.383 kb on - strand, within A4249_RS02425 at 519.517 kb on + strand, within A4249_RS02425 at 519.517 kb on + strand, within A4249_RS02425 at 519.517 kb on + strand, within A4249_RS02425 at 519.517 kb on + strand, within A4249_RS02425 at 519.518 kb on - strand, within A4249_RS02425 at 519.576 kb on + strand, within A4249_RS02425 at 519.576 kb on + strand, within A4249_RS02425 at 519.576 kb on + strand, within A4249_RS02425 at 519.577 kb on - strand, within A4249_RS02425 at 519.577 kb on - strand, within A4249_RS02425 at 519.577 kb on - strand, within A4249_RS02425 at 519.592 kb on + strand, within A4249_RS02425 at 519.592 kb on + strand, within A4249_RS02425 at 519.592 kb on + strand, within A4249_RS02425 at 519.592 kb on + strand, within A4249_RS02425 at 519.592 kb on + strand, within A4249_RS02425 at 519.593 kb on - strand, within A4249_RS02425 at 519.593 kb on - strand, within A4249_RS02425 at 519.593 kb on - strand, within A4249_RS02425 at 519.629 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.658 kb on + strand, within A4249_RS02425 at 519.659 kb on - strand, within A4249_RS02425 at 519.659 kb on - strand, within A4249_RS02425 at 519.659 kb on - strand, within A4249_RS02425 at 519.659 kb on - strand, within A4249_RS02425 at 519.700 kb on + strand, within A4249_RS02425 at 519.700 kb on + strand, within A4249_RS02425 at 519.701 kb on - strand, within A4249_RS02425 at 519.701 kb on - strand, within A4249_RS02425 at 519.701 kb on - strand, within A4249_RS02425 at 519.701 kb on - strand, within A4249_RS02425 at 519.701 kb on - strand, within A4249_RS02425 at 519.772 kb on + strand, within A4249_RS02425 at 519.772 kb on + strand, within A4249_RS02425 at 519.772 kb on + strand, within A4249_RS02425 at 519.772 kb on + strand, within A4249_RS02425 at 519.773 kb on - strand, within A4249_RS02425 at 519.773 kb on - strand, within A4249_RS02425 at 519.773 kb on - strand, within A4249_RS02425 at 519.773 kb on - strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.775 kb on + strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.776 kb on - strand, within A4249_RS02425 at 519.783 kb on + strand, within A4249_RS02425 at 519.859 kb on + strand, within A4249_RS02425 at 519.859 kb on + strand, within A4249_RS02425 at 519.859 kb on + strand, within A4249_RS02425 at 519.860 kb on - strand, within A4249_RS02425 at 519.860 kb on - strand, within A4249_RS02425 at 519.860 kb on - strand, within A4249_RS02425 at 519.860 kb on - strand, within A4249_RS02425 at 519.946 kb on + strand, within A4249_RS02425 at 519.946 kb on + strand, within A4249_RS02425 at 519.946 kb on + strand, within A4249_RS02425 at 519.946 kb on + strand, within A4249_RS02425 at 519.946 kb on + strand, within A4249_RS02425 at 520.030 kb on + strand, within A4249_RS02425 at 520.030 kb on + strand, within A4249_RS02425 at 520.030 kb on + strand, within A4249_RS02425 at 520.030 kb on + strand, within A4249_RS02425 at 520.030 kb on + strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.031 kb on - strand, within A4249_RS02425 at 520.300 kb on + strand at 520.301 kb on - strand at 520.349 kb on + strand at 520.349 kb on + strand at 520.349 kb on + strand at 520.349 kb on + strand at 520.349 kb on + strand at 520.350 kb on - strand at 520.350 kb on - strand at 520.350 kb on - strand at 520.350 kb on - strand at 520.350 kb on - strand at 520.350 kb on - strand at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.500 kb on + strand, within A4249_RS02430 at 520.501 kb on - strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.659 kb on + strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.660 kb on - strand, within A4249_RS02430 at 520.905 kb on + strand, within A4249_RS02430 at 521.076 kb on - strand, within A4249_RS02430 at 521.076 kb on - strand, within A4249_RS02430 at 521.076 kb on - strand, within A4249_RS02430 at 521.096 kb on + strand, within A4249_RS02430 at 521.097 kb on - strand, within A4249_RS02430 at 521.097 kb on - strand, within A4249_RS02430 at 521.293 kb on - strand at 521.293 kb on - strand at 521.335 kb on + strand at 521.335 kb on + strand at 521.335 kb on + strand at 521.335 kb on + strand at 521.336 kb on - strand at 521.336 kb on - strand at 521.336 kb on - strand at 521.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 30C remove 518,232 + A4249_RS02420 0.63 -0.4 518,232 + A4249_RS02420 0.63 +1.9 518,253 + A4249_RS02420 0.64 +0.3 518,253 + A4249_RS02420 0.64 -0.9 518,253 + A4249_RS02420 0.64 -0.3 518,254 - A4249_RS02420 0.65 +1.4 518,254 - A4249_RS02420 0.65 -2.3 518,254 - A4249_RS02420 0.65 +0.3 518,254 - A4249_RS02420 0.65 +0.3 518,354 - A4249_RS02420 0.69 -0.7 518,354 - A4249_RS02420 0.69 -0.3 518,754 + A4249_RS02420 0.89 +0.6 518,754 + A4249_RS02420 0.89 -0.8 518,754 + A4249_RS02420 0.89 +0.1 518,755 - A4249_RS02420 0.89 +0.6 518,755 - A4249_RS02420 0.89 -1.7 518,755 - A4249_RS02420 0.89 -0.2 518,970 + +1.9 518,970 + +0.7 518,970 + +0.6 518,970 + -0.1 518,971 - +0.4 518,971 - -0.7 518,971 - -1.9 518,971 - +0.3 518,971 - +0.9 519,086 + +0.3 519,094 - +0.9 519,155 - -2.4 519,155 - -2.9 519,178 + -2.3 519,178 + -1.3 519,178 + -4.8 519,178 + -3.3 519,178 + -3.1 519,178 + -4.7 519,178 + -1.3 519,179 - -2.0 519,179 - -4.6 519,179 - -3.6 519,179 - -1.3 519,179 - -4.0 519,179 - -2.5 519,179 - -3.7 519,179 - -2.7 519,179 - -3.5 519,331 + A4249_RS02425 0.16 -3.8 519,379 + A4249_RS02425 0.20 +0.3 519,379 + A4249_RS02425 0.20 -2.9 519,379 + A4249_RS02425 0.20 -2.3 519,379 + A4249_RS02425 0.20 -5.0 519,379 + A4249_RS02425 0.20 -3.0 519,379 + A4249_RS02425 0.20 -3.5 519,379 + A4249_RS02425 0.20 -2.5 519,379 + A4249_RS02425 0.20 -2.5 519,380 - A4249_RS02425 0.20 -1.3 519,380 - A4249_RS02425 0.20 -1.3 519,380 - A4249_RS02425 0.20 +1.3 519,380 - A4249_RS02425 0.20 -3.9 519,380 - A4249_RS02425 0.20 -0.7 519,380 - A4249_RS02425 0.20 +0.3 519,380 - A4249_RS02425 0.20 -2.7 519,380 - A4249_RS02425 0.20 -3.8 519,380 - A4249_RS02425 0.20 -3.3 519,382 + A4249_RS02425 0.20 +0.3 519,383 - A4249_RS02425 0.20 +0.3 519,517 + A4249_RS02425 0.31 -3.2 519,517 + A4249_RS02425 0.31 -4.3 519,517 + A4249_RS02425 0.31 -2.8 519,517 + A4249_RS02425 0.31 -3.3 519,518 - A4249_RS02425 0.31 -2.5 519,576 + A4249_RS02425 0.36 -4.1 519,576 + A4249_RS02425 0.36 -3.5 519,576 + A4249_RS02425 0.36 -3.0 519,577 - A4249_RS02425 0.36 -4.6 519,577 - A4249_RS02425 0.36 -3.3 519,577 - A4249_RS02425 0.36 -3.5 519,592 + A4249_RS02425 0.37 -0.7 519,592 + A4249_RS02425 0.37 -3.2 519,592 + A4249_RS02425 0.37 -4.6 519,592 + A4249_RS02425 0.37 -2.0 519,592 + A4249_RS02425 0.37 -3.6 519,593 - A4249_RS02425 0.38 -2.5 519,593 - A4249_RS02425 0.38 -3.8 519,593 - A4249_RS02425 0.38 -3.0 519,629 + A4249_RS02425 0.41 -2.9 519,658 + A4249_RS02425 0.43 -1.3 519,658 + A4249_RS02425 0.43 -1.3 519,658 + A4249_RS02425 0.43 -4.3 519,658 + A4249_RS02425 0.43 -4.3 519,658 + A4249_RS02425 0.43 +0.3 519,658 + A4249_RS02425 0.43 -4.0 519,659 - A4249_RS02425 0.43 -2.3 519,659 - A4249_RS02425 0.43 -0.7 519,659 - A4249_RS02425 0.43 -2.9 519,659 - A4249_RS02425 0.43 -2.9 519,700 + A4249_RS02425 0.46 -4.2 519,700 + A4249_RS02425 0.46 -4.3 519,701 - A4249_RS02425 0.46 -3.7 519,701 - A4249_RS02425 0.46 -4.8 519,701 - A4249_RS02425 0.46 -5.1 519,701 - A4249_RS02425 0.46 -2.3 519,701 - A4249_RS02425 0.46 -2.0 519,772 + A4249_RS02425 0.52 -2.9 519,772 + A4249_RS02425 0.52 -2.0 519,772 + A4249_RS02425 0.52 -0.2 519,772 + A4249_RS02425 0.52 -4.2 519,773 - A4249_RS02425 0.52 -1.7 519,773 - A4249_RS02425 0.52 -2.3 519,773 - A4249_RS02425 0.52 -4.9 519,773 - A4249_RS02425 0.52 -5.0 519,775 + A4249_RS02425 0.53 -2.5 519,775 + A4249_RS02425 0.53 -5.2 519,775 + A4249_RS02425 0.53 -2.5 519,775 + A4249_RS02425 0.53 -2.9 519,775 + A4249_RS02425 0.53 -3.3 519,775 + A4249_RS02425 0.53 -3.8 519,776 - A4249_RS02425 0.53 -3.4 519,776 - A4249_RS02425 0.53 -1.7 519,776 - A4249_RS02425 0.53 +0.3 519,776 - A4249_RS02425 0.53 -4.2 519,776 - A4249_RS02425 0.53 -2.3 519,776 - A4249_RS02425 0.53 -0.7 519,776 - A4249_RS02425 0.53 -3.7 519,783 + A4249_RS02425 0.53 -6.4 519,859 + A4249_RS02425 0.60 -4.1 519,859 + A4249_RS02425 0.60 -1.3 519,859 + A4249_RS02425 0.60 -2.0 519,860 - A4249_RS02425 0.60 -4.1 519,860 - A4249_RS02425 0.60 -4.7 519,860 - A4249_RS02425 0.60 -3.5 519,860 - A4249_RS02425 0.60 -3.2 519,946 + A4249_RS02425 0.67 -0.7 519,946 + A4249_RS02425 0.67 -1.3 519,946 + A4249_RS02425 0.67 -4.2 519,946 + A4249_RS02425 0.67 -1.3 519,946 + A4249_RS02425 0.67 -3.2 520,030 + A4249_RS02425 0.74 -3.6 520,030 + A4249_RS02425 0.74 -2.5 520,030 + A4249_RS02425 0.74 -3.7 520,030 + A4249_RS02425 0.74 -3.4 520,030 + A4249_RS02425 0.74 -4.3 520,031 - A4249_RS02425 0.74 -3.6 520,031 - A4249_RS02425 0.74 -3.3 520,031 - A4249_RS02425 0.74 -4.8 520,031 - A4249_RS02425 0.74 -2.7 520,031 - A4249_RS02425 0.74 -2.5 520,031 - A4249_RS02425 0.74 -2.5 520,300 + -3.3 520,301 - -2.4 520,349 + +1.3 520,349 + +0.3 520,349 + +0.6 520,349 + -0.0 520,349 + +0.9 520,350 - +1.3 520,350 - -0.3 520,350 - -1.2 520,350 - -0.5 520,350 - -0.1 520,350 - -0.3 520,500 + A4249_RS02430 0.16 -0.6 520,500 + A4249_RS02430 0.16 +0.5 520,500 + A4249_RS02430 0.16 +0.2 520,500 + A4249_RS02430 0.16 -1.3 520,500 + A4249_RS02430 0.16 +0.1 520,500 + A4249_RS02430 0.16 +1.9 520,500 + A4249_RS02430 0.16 -2.0 520,501 - A4249_RS02430 0.16 -0.7 520,659 + A4249_RS02430 0.33 +2.9 520,659 + A4249_RS02430 0.33 -1.3 520,659 + A4249_RS02430 0.33 +0.7 520,659 + A4249_RS02430 0.33 -0.4 520,659 + A4249_RS02430 0.33 +0.5 520,659 + A4249_RS02430 0.33 +0.6 520,659 + A4249_RS02430 0.33 +0.4 520,659 + A4249_RS02430 0.33 +0.4 520,659 + A4249_RS02430 0.33 -0.1 520,659 + A4249_RS02430 0.33 -1.9 520,659 + A4249_RS02430 0.33 -1.1 520,659 + A4249_RS02430 0.33 -0.1 520,659 + A4249_RS02430 0.33 -0.8 520,660 - A4249_RS02430 0.33 -1.4 520,660 - A4249_RS02430 0.33 -0.0 520,660 - A4249_RS02430 0.33 +0.3 520,660 - A4249_RS02430 0.33 -2.7 520,660 - A4249_RS02430 0.33 -0.1 520,660 - A4249_RS02430 0.33 -0.5 520,660 - A4249_RS02430 0.33 +1.3 520,660 - A4249_RS02430 0.33 +1.3 520,660 - A4249_RS02430 0.33 -2.7 520,660 - A4249_RS02430 0.33 +0.3 520,660 - A4249_RS02430 0.33 -0.4 520,660 - A4249_RS02430 0.33 -0.6 520,660 - A4249_RS02430 0.33 +0.7 520,660 - A4249_RS02430 0.33 -1.7 520,905 + A4249_RS02430 0.59 -0.5 521,076 - A4249_RS02430 0.77 +0.2 521,076 - A4249_RS02430 0.77 -1.9 521,076 - A4249_RS02430 0.77 -0.4 521,096 + A4249_RS02430 0.79 +0.9 521,097 - A4249_RS02430 0.79 +0.3 521,097 - A4249_RS02430 0.79 -1.9 521,293 - +0.4 521,293 - +0.3 521,335 + -0.4 521,335 + +0.2 521,335 + -0.6 521,335 + +0.8 521,336 - -2.3 521,336 - +0.5 521,336 - +0.7 521,336 - +1.3
Or see this region's nucleotide sequence