Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01630

Experiment: D-Glucose (C); 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS01625 and A4249_RS01630 are separated by 214 nucleotidesA4249_RS01630 and A4249_RS01635 overlap by 4 nucleotidesA4249_RS01635 and A4249_RS01640 are separated by 34 nucleotides A4249_RS01625: A4249_RS01625 - S46 family peptidase, at 308,801 to 310,894 _RS01625 A4249_RS01630: A4249_RS01630 - ABC transporter permease, at 311,109 to 312,281 _RS01630 A4249_RS01635: A4249_RS01635 - ABC transporter ATP-binding protein, at 312,278 to 313,033 _RS01635 A4249_RS01640: A4249_RS01640 - biotin/lipoyl-binding protein, at 313,068 to 314,072 _RS01640 Position (kb) 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 310.203 kb on + strand, within A4249_RS01625at 310.203 kb on + strand, within A4249_RS01625at 310.203 kb on + strand, within A4249_RS01625at 310.203 kb on + strand, within A4249_RS01625at 310.203 kb on + strand, within A4249_RS01625at 310.204 kb on - strand, within A4249_RS01625at 310.204 kb on - strand, within A4249_RS01625at 310.204 kb on - strand, within A4249_RS01625at 310.234 kb on - strand, within A4249_RS01625at 310.317 kb on + strand, within A4249_RS01625at 310.317 kb on + strand, within A4249_RS01625at 310.317 kb on + strand, within A4249_RS01625at 310.318 kb on - strand, within A4249_RS01625at 310.318 kb on - strand, within A4249_RS01625at 310.332 kb on + strand, within A4249_RS01625at 310.333 kb on - strand, within A4249_RS01625at 310.333 kb on - strand, within A4249_RS01625at 310.333 kb on - strand, within A4249_RS01625at 310.341 kb on + strand, within A4249_RS01625at 310.341 kb on + strand, within A4249_RS01625at 310.341 kb on + strand, within A4249_RS01625at 310.341 kb on + strand, within A4249_RS01625at 310.342 kb on - strand, within A4249_RS01625at 310.342 kb on - strand, within A4249_RS01625at 310.356 kb on + strand, within A4249_RS01625at 310.356 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.364 kb on + strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.365 kb on - strand, within A4249_RS01625at 310.584 kb on + strand, within A4249_RS01625at 310.584 kb on + strand, within A4249_RS01625at 310.585 kb on - strand, within A4249_RS01625at 310.746 kb on + strandat 310.746 kb on + strandat 310.746 kb on + strandat 310.747 kb on - strandat 310.747 kb on - strandat 310.939 kb on - strandat 310.939 kb on - strandat 310.946 kb on - strandat 310.982 kb on + strandat 310.982 kb on + strandat 310.982 kb on + strandat 310.982 kb on + strandat 310.983 kb on - strandat 310.983 kb on - strandat 310.991 kb on + strandat 310.991 kb on + strandat 310.991 kb on + strandat 310.992 kb on - strandat 310.992 kb on - strandat 310.992 kb on - strandat 311.036 kb on + strandat 311.046 kb on + strandat 311.046 kb on + strandat 311.046 kb on + strandat 311.046 kb on + strandat 311.047 kb on - strandat 311.047 kb on - strandat 311.047 kb on - strandat 311.077 kb on + strandat 311.078 kb on - strandat 311.078 kb on - strandat 311.087 kb on + strandat 311.087 kb on + strandat 311.088 kb on - strandat 311.099 kb on - strandat 311.099 kb on - strandat 311.151 kb on + strandat 311.151 kb on + strandat 311.151 kb on + strandat 311.152 kb on - strandat 311.152 kb on - strandat 311.152 kb on - strandat 311.152 kb on - strandat 311.152 kb on - strandat 311.153 kb on + strandat 311.153 kb on + strandat 311.153 kb on + strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.346 kb on + strand, within A4249_RS01630at 311.346 kb on + strand, within A4249_RS01630at 311.346 kb on + strand, within A4249_RS01630at 311.347 kb on - strand, within A4249_RS01630at 311.347 kb on - strand, within A4249_RS01630at 311.347 kb on - strand, within A4249_RS01630at 311.533 kb on - strand, within A4249_RS01630at 311.533 kb on - strand, within A4249_RS01630at 311.568 kb on + strand, within A4249_RS01630at 311.568 kb on + strand, within A4249_RS01630at 311.568 kb on + strand, within A4249_RS01630at 311.568 kb on + strand, within A4249_RS01630at 311.568 kb on + strand, within A4249_RS01630at 311.569 kb on - strand, within A4249_RS01630at 311.634 kb on + strand, within A4249_RS01630at 311.635 kb on - strand, within A4249_RS01630at 311.635 kb on - strand, within A4249_RS01630at 311.635 kb on - strand, within A4249_RS01630at 311.635 kb on - strand, within A4249_RS01630at 311.635 kb on - strand, within A4249_RS01630at 311.684 kb on + strand, within A4249_RS01630at 311.684 kb on + strand, within A4249_RS01630at 311.684 kb on + strand, within A4249_RS01630at 311.684 kb on + strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 311.685 kb on - strand, within A4249_RS01630at 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.289 kb on + strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.290 kb on - strandat 312.572 kb on - strand, within A4249_RS01635at 312.572 kb on - strand, within A4249_RS01635at 313.216 kb on - strand, within A4249_RS01640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
remove
310,203 + A4249_RS01625 0.67 -2.0
310,203 + A4249_RS01625 0.67 -1.3
310,203 + A4249_RS01625 0.67 -1.4
310,203 + A4249_RS01625 0.67 -0.7
310,203 + A4249_RS01625 0.67 -0.8
310,204 - A4249_RS01625 0.67 -0.2
310,204 - A4249_RS01625 0.67 -0.1
310,204 - A4249_RS01625 0.67 -1.7
310,234 - A4249_RS01625 0.68 -0.7
310,317 + A4249_RS01625 0.72 +1.9
310,317 + A4249_RS01625 0.72 -0.3
310,317 + A4249_RS01625 0.72 +0.3
310,318 - A4249_RS01625 0.72 +0.3
310,318 - A4249_RS01625 0.72 -1.4
310,332 + A4249_RS01625 0.73 -0.4
310,333 - A4249_RS01625 0.73 -0.6
310,333 - A4249_RS01625 0.73 -3.2
310,333 - A4249_RS01625 0.73 -0.5
310,341 + A4249_RS01625 0.74 -0.8
310,341 + A4249_RS01625 0.74 -0.2
310,341 + A4249_RS01625 0.74 -0.9
310,341 + A4249_RS01625 0.74 +0.9
310,342 - A4249_RS01625 0.74 -1.3
310,342 - A4249_RS01625 0.74 -0.9
310,356 + A4249_RS01625 0.74 -0.7
310,356 + A4249_RS01625 0.74 +0.9
310,364 + A4249_RS01625 0.75 +0.3
310,364 + A4249_RS01625 0.75 -0.7
310,364 + A4249_RS01625 0.75 +1.9
310,364 + A4249_RS01625 0.75 +0.3
310,364 + A4249_RS01625 0.75 -1.0
310,364 + A4249_RS01625 0.75 -2.5
310,364 + A4249_RS01625 0.75 +0.3
310,365 - A4249_RS01625 0.75 +0.3
310,365 - A4249_RS01625 0.75 -2.2
310,365 - A4249_RS01625 0.75 -0.0
310,365 - A4249_RS01625 0.75 -1.7
310,365 - A4249_RS01625 0.75 -2.7
310,365 - A4249_RS01625 0.75 +0.3
310,365 - A4249_RS01625 0.75 -0.7
310,365 - A4249_RS01625 0.75 -0.8
310,365 - A4249_RS01625 0.75 -0.9
310,365 - A4249_RS01625 0.75 +1.9
310,584 + A4249_RS01625 0.85 -0.3
310,584 + A4249_RS01625 0.85 -1.7
310,585 - A4249_RS01625 0.85 -0.2
310,746 + -1.3
310,746 + -0.4
310,746 + -0.3
310,747 - -0.7
310,747 - +1.9
310,939 - -1.6
310,939 - +0.3
310,946 - +0.2
310,982 + +0.3
310,982 + +0.6
310,982 + -0.9
310,982 + -1.7
310,983 - +0.4
310,983 - -0.8
310,991 + +1.2
310,991 + +0.3
310,991 + +3.5
310,992 - +0.5
310,992 - -0.0
310,992 - +0.6
311,036 + +0.3
311,046 + +0.8
311,046 + -0.4
311,046 + -0.4
311,046 + -1.4
311,047 - -0.8
311,047 - -1.3
311,047 - -0.6
311,077 + +0.0
311,078 - -0.4
311,078 - +0.7
311,087 + -1.2
311,087 + -0.4
311,088 - -1.7
311,099 - -0.5
311,099 - -1.0
311,151 + -1.0
311,151 + +0.1
311,151 + -0.3
311,152 - -1.1
311,152 - -1.4
311,152 - +0.3
311,152 - +1.5
311,152 - +0.1
311,153 + -0.3
311,153 + -1.1
311,153 + -1.7
311,154 - -0.4
311,154 - -3.4
311,154 - -0.0
311,154 - -1.7
311,154 - -0.6
311,346 + A4249_RS01630 0.20 +0.2
311,346 + A4249_RS01630 0.20 -1.7
311,346 + A4249_RS01630 0.20 +0.5
311,347 - A4249_RS01630 0.20 +0.1
311,347 - A4249_RS01630 0.20 -1.1
311,347 - A4249_RS01630 0.20 -0.4
311,533 - A4249_RS01630 0.36 +2.6
311,533 - A4249_RS01630 0.36 -0.5
311,568 + A4249_RS01630 0.39 -0.4
311,568 + A4249_RS01630 0.39 +0.3
311,568 + A4249_RS01630 0.39 -0.6
311,568 + A4249_RS01630 0.39 -0.3
311,568 + A4249_RS01630 0.39 -1.2
311,569 - A4249_RS01630 0.39 +0.9
311,634 + A4249_RS01630 0.45 -1.1
311,635 - A4249_RS01630 0.45 +0.2
311,635 - A4249_RS01630 0.45 +0.5
311,635 - A4249_RS01630 0.45 -0.3
311,635 - A4249_RS01630 0.45 -0.3
311,635 - A4249_RS01630 0.45 -0.1
311,684 + A4249_RS01630 0.49 -1.3
311,684 + A4249_RS01630 0.49 +0.9
311,684 + A4249_RS01630 0.49 -1.1
311,684 + A4249_RS01630 0.49 +0.3
311,685 - A4249_RS01630 0.49 +1.0
311,685 - A4249_RS01630 0.49 +0.8
311,685 - A4249_RS01630 0.49 +0.1
311,685 - A4249_RS01630 0.49 -0.5
311,685 - A4249_RS01630 0.49 -0.4
311,685 - A4249_RS01630 0.49 -0.3
312,289 + +0.2
312,289 + +1.0
312,289 + -1.0
312,289 + -2.9
312,289 + +1.9
312,289 + +0.2
312,289 + +1.1
312,289 + -1.2
312,289 + -0.5
312,290 - -0.4
312,290 - +0.5
312,290 - -0.7
312,290 - -1.1
312,290 - +2.3
312,290 - +0.3
312,290 - +3.1
312,290 - -0.4
312,290 - +0.5
312,572 - A4249_RS01635 0.39 -1.0
312,572 - A4249_RS01635 0.39 -0.4
313,216 - A4249_RS01640 0.15 -0.2

Or see this region's nucleotide sequence