Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00640

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00630 and A4249_RS00635 overlap by 4 nucleotidesA4249_RS00635 and A4249_RS00640 are separated by 21 nucleotidesA4249_RS00640 and A4249_RS00645 are separated by 448 nucleotidesA4249_RS00645 and A4249_RS00650 are separated by 246 nucleotides A4249_RS00630: A4249_RS00630 - L-aspartate oxidase, at 113,185 to 114,699 _RS00630 A4249_RS00635: A4249_RS00635 - carboxylating nicotinate-nucleotide diphosphorylase, at 114,696 to 115,553 _RS00635 A4249_RS00640: A4249_RS00640 - cell wall hydrolase, at 115,575 to 116,699 _RS00640 A4249_RS00645: A4249_RS00645 - hypothetical protein, at 117,148 to 117,333 _RS00645 A4249_RS00650: A4249_RS00650 - DUF6481 family protein, at 117,580 to 117,936 _RS00650 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.611 kb on - strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.652 kb on - strandat 114.652 kb on - strandat 114.734 kb on - strandat 115.042 kb on + strand, within A4249_RS00635at 115.043 kb on - strand, within A4249_RS00635at 115.043 kb on - strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.095 kb on - strand, within A4249_RS00635at 115.318 kb on + strand, within A4249_RS00635at 115.318 kb on + strand, within A4249_RS00635at 115.319 kb on - strand, within A4249_RS00635at 115.319 kb on - strand, within A4249_RS00635at 115.849 kb on + strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.892 kb on - strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.231 kb on - strand, within A4249_RS00640at 116.233 kb on + strand, within A4249_RS00640at 116.234 kb on - strand, within A4249_RS00640at 116.425 kb on + strand, within A4249_RS00640at 116.425 kb on + strand, within A4249_RS00640at 116.581 kb on + strand, within A4249_RS00640at 116.582 kb on - strand, within A4249_RS00640at 116.705 kb on + strandat 116.706 kb on - strandat 116.706 kb on - strandat 116.706 kb on - strandat 116.706 kb on - strandat 116.849 kb on + strandat 116.955 kb on + strandat 117.010 kb on + strandat 117.083 kb on + strandat 117.083 kb on + strandat 117.106 kb on - strandat 117.331 kb on + strandat 117.331 kb on + strandat 117.331 kb on + strandat 117.331 kb on + strandat 117.332 kb on - strandat 117.332 kb on - strandat 117.332 kb on - strandat 117.332 kb on - strandat 117.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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114,611 - +0.7
114,651 + +0.7
114,651 + +0.4
114,651 + +0.0
114,651 + -0.4
114,652 - +0.4
114,652 - +0.9
114,734 - +0.6
115,042 + A4249_RS00635 0.40 -0.0
115,043 - A4249_RS00635 0.40 +0.8
115,043 - A4249_RS00635 0.40 +1.7
115,053 + A4249_RS00635 0.42 -0.5
115,053 + A4249_RS00635 0.42 -2.8
115,053 + A4249_RS00635 0.42 +0.6
115,053 + A4249_RS00635 0.42 +0.4
115,053 + A4249_RS00635 0.42 -0.4
115,053 + A4249_RS00635 0.42 +0.1
115,053 + A4249_RS00635 0.42 +0.2
115,053 + A4249_RS00635 0.42 +1.0
115,053 + A4249_RS00635 0.42 -0.1
115,053 + A4249_RS00635 0.42 +0.6
115,054 - A4249_RS00635 0.42 -1.1
115,054 - A4249_RS00635 0.42 +0.2
115,054 - A4249_RS00635 0.42 -0.7
115,054 - A4249_RS00635 0.42 +0.3
115,054 - A4249_RS00635 0.42 -1.2
115,054 - A4249_RS00635 0.42 +1.4
115,054 - A4249_RS00635 0.42 +1.6
115,054 - A4249_RS00635 0.42 -0.5
115,054 - A4249_RS00635 0.42 -0.9
115,054 - A4249_RS00635 0.42 -0.3
115,095 - A4249_RS00635 0.47 -0.2
115,318 + A4249_RS00635 0.72 -0.2
115,318 + A4249_RS00635 0.72 +1.0
115,319 - A4249_RS00635 0.73 +0.3
115,319 - A4249_RS00635 0.73 -0.7
115,849 + A4249_RS00640 0.24 +0.6
115,850 - A4249_RS00640 0.24 +0.1
115,850 - A4249_RS00640 0.24 +0.0
115,850 - A4249_RS00640 0.24 -0.6
115,892 - A4249_RS00640 0.28 +0.3
116,230 + A4249_RS00640 0.58 +0.7
116,230 + A4249_RS00640 0.58 +1.0
116,230 + A4249_RS00640 0.58 +0.0
116,231 - A4249_RS00640 0.58 -0.6
116,233 + A4249_RS00640 0.58 +1.4
116,234 - A4249_RS00640 0.59 -2.5
116,425 + A4249_RS00640 0.76 -0.7
116,425 + A4249_RS00640 0.76 +0.1
116,581 + A4249_RS00640 0.89 +0.7
116,582 - A4249_RS00640 0.90 +0.2
116,705 + +0.6
116,706 - +0.3
116,706 - +0.4
116,706 - -0.3
116,706 - +0.2
116,849 + +0.6
116,955 + +0.4
117,010 + +0.3
117,083 + +0.3
117,083 + +0.5
117,106 - +2.2
117,331 + +0.3
117,331 + -2.6
117,331 + -0.7
117,331 + -1.2
117,332 - -1.4
117,332 - +1.1
117,332 - +1.1
117,332 - +0.1
117,332 - +0.4

Or see this region's nucleotide sequence