Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00020

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00010 and A4249_RS00015 are separated by 93 nucleotidesA4249_RS00015 and A4249_RS00020 are separated by 6 nucleotidesA4249_RS00020 and A4249_RS00025 are separated by 185 nucleotides A4249_RS00010: A4249_RS00010 - homoserine kinase, at 1,756 to 2,700 _RS00010 A4249_RS00015: A4249_RS00015 - CsbD family protein, at 2,794 to 3,108 _RS00015 A4249_RS00020: A4249_RS00020 - threonine synthase, at 3,115 to 4,548 _RS00020 A4249_RS00025: A4249_RS00025 - retropepsin-like aspartic protease, at 4,734 to 5,681 _RS00025 Position (kb) 3 4 5Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2.336 kb on - strand, within A4249_RS00010at 2.336 kb on - strand, within A4249_RS00010at 2.336 kb on - strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.419 kb on + strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.506 kb on + strand, within A4249_RS00010at 2.506 kb on + strand, within A4249_RS00010at 2.507 kb on - strand, within A4249_RS00010at 2.899 kb on + strand, within A4249_RS00015at 2.899 kb on + strand, within A4249_RS00015at 2.900 kb on - strand, within A4249_RS00015at 2.900 kb on - strand, within A4249_RS00015at 2.902 kb on - strand, within A4249_RS00015at 3.062 kb on + strand, within A4249_RS00015at 3.062 kb on + strand, within A4249_RS00015at 3.106 kb on + strandat 3.107 kb on - strandat 3.116 kb on + strandat 3.117 kb on - strandat 3.117 kb on - strandat 3.257 kb on - strandat 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.626 kb on + strand, within A4249_RS00020at 3.626 kb on + strand, within A4249_RS00020at 3.627 kb on - strand, within A4249_RS00020at 3.627 kb on - strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.800 kb on + strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.801 kb on - strand, within A4249_RS00020at 3.803 kb on + strand, within A4249_RS00020at 3.803 kb on + strand, within A4249_RS00020at 3.803 kb on + strand, within A4249_RS00020at 3.803 kb on + strand, within A4249_RS00020at 3.804 kb on - strand, within A4249_RS00020at 3.804 kb on - strand, within A4249_RS00020at 3.804 kb on - strand, within A4249_RS00020at 3.804 kb on - strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.347 kb on + strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.348 kb on - strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.349 kb on + strand, within A4249_RS00020at 4.350 kb on - strand, within A4249_RS00020at 4.350 kb on - strand, within A4249_RS00020at 4.350 kb on - strand, within A4249_RS00020at 4.350 kb on - strand, within A4249_RS00020at 4.350 kb on - strand, within A4249_RS00020at 4.404 kb on + strand, within A4249_RS00020at 4.404 kb on + strand, within A4249_RS00020at 4.405 kb on - strandat 4.405 kb on - strandat 4.405 kb on - strandat 4.405 kb on - strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.406 kb on + strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.407 kb on - strandat 4.487 kb on + strandat 4.487 kb on + strandat 4.487 kb on + strandat 4.488 kb on - strandat 4.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,336 - A4249_RS00010 0.61 -3.5
2,336 - A4249_RS00010 0.61 -4.7
2,336 - A4249_RS00010 0.61 -1.2
2,392 + A4249_RS00010 0.67 -3.2
2,392 + A4249_RS00010 0.67 -2.9
2,392 + A4249_RS00010 0.67 -4.1
2,393 - A4249_RS00010 0.67 -3.3
2,393 - A4249_RS00010 0.67 -3.1
2,393 - A4249_RS00010 0.67 -4.5
2,393 - A4249_RS00010 0.67 -0.6
2,393 - A4249_RS00010 0.67 -3.2
2,419 + A4249_RS00010 0.70 -1.2
2,420 - A4249_RS00010 0.70 -2.6
2,420 - A4249_RS00010 0.70 -1.2
2,420 - A4249_RS00010 0.70 -0.4
2,506 + A4249_RS00010 0.79 -4.0
2,506 + A4249_RS00010 0.79 -2.6
2,507 - A4249_RS00010 0.79 +0.4
2,899 + A4249_RS00015 0.33 -0.3
2,899 + A4249_RS00015 0.33 +0.1
2,900 - A4249_RS00015 0.34 +0.0
2,900 - A4249_RS00015 0.34 -0.8
2,902 - A4249_RS00015 0.34 +0.2
3,062 + A4249_RS00015 0.85 +0.2
3,062 + A4249_RS00015 0.85 -0.4
3,106 + -0.3
3,107 - -0.6
3,116 + -1.5
3,117 - -0.8
3,117 - +0.0
3,257 - -1.9
3,383 + A4249_RS00020 0.19 -3.8
3,383 + A4249_RS00020 0.19 -2.4
3,383 + A4249_RS00020 0.19 -1.9
3,383 + A4249_RS00020 0.19 -1.2
3,383 + A4249_RS00020 0.19 -3.0
3,384 - A4249_RS00020 0.19 -2.4
3,384 - A4249_RS00020 0.19 -2.6
3,384 - A4249_RS00020 0.19 -2.6
3,384 - A4249_RS00020 0.19 -4.8
3,626 + A4249_RS00020 0.36 -4.5
3,626 + A4249_RS00020 0.36 -2.7
3,627 - A4249_RS00020 0.36 -2.9
3,627 - A4249_RS00020 0.36 -2.8
3,800 + A4249_RS00020 0.48 -2.4
3,800 + A4249_RS00020 0.48 -3.3
3,800 + A4249_RS00020 0.48 -1.6
3,800 + A4249_RS00020 0.48 -4.5
3,800 + A4249_RS00020 0.48 -3.2
3,800 + A4249_RS00020 0.48 -1.2
3,800 + A4249_RS00020 0.48 -2.8
3,800 + A4249_RS00020 0.48 -5.4
3,800 + A4249_RS00020 0.48 -2.2
3,800 + A4249_RS00020 0.48 -3.7
3,800 + A4249_RS00020 0.48 -3.3
3,800 + A4249_RS00020 0.48 -3.5
3,800 + A4249_RS00020 0.48 -0.6
3,800 + A4249_RS00020 0.48 -5.2
3,800 + A4249_RS00020 0.48 -3.4
3,800 + A4249_RS00020 0.48 -3.6
3,800 + A4249_RS00020 0.48 -4.2
3,801 - A4249_RS00020 0.48 -2.9
3,801 - A4249_RS00020 0.48 -3.3
3,801 - A4249_RS00020 0.48 -4.4
3,801 - A4249_RS00020 0.48 -2.9
3,801 - A4249_RS00020 0.48 -3.3
3,801 - A4249_RS00020 0.48 -1.6
3,801 - A4249_RS00020 0.48 -1.9
3,801 - A4249_RS00020 0.48 -2.4
3,801 - A4249_RS00020 0.48 -0.6
3,801 - A4249_RS00020 0.48 -3.4
3,801 - A4249_RS00020 0.48 -2.6
3,801 - A4249_RS00020 0.48 -3.2
3,801 - A4249_RS00020 0.48 -3.9
3,801 - A4249_RS00020 0.48 -1.6
3,801 - A4249_RS00020 0.48 -2.9
3,801 - A4249_RS00020 0.48 -2.9
3,803 + A4249_RS00020 0.48 -1.9
3,803 + A4249_RS00020 0.48 -3.3
3,803 + A4249_RS00020 0.48 -2.8
3,803 + A4249_RS00020 0.48 -2.4
3,804 - A4249_RS00020 0.48 -1.9
3,804 - A4249_RS00020 0.48 -2.4
3,804 - A4249_RS00020 0.48 -3.7
3,804 - A4249_RS00020 0.48 -1.2
4,347 + A4249_RS00020 0.86 -3.4
4,347 + A4249_RS00020 0.86 -3.3
4,347 + A4249_RS00020 0.86 -2.8
4,347 + A4249_RS00020 0.86 -1.6
4,347 + A4249_RS00020 0.86 +0.4
4,347 + A4249_RS00020 0.86 -4.9
4,348 - A4249_RS00020 0.86 -4.1
4,348 - A4249_RS00020 0.86 -3.1
4,348 - A4249_RS00020 0.86 -3.8
4,348 - A4249_RS00020 0.86 -1.6
4,348 - A4249_RS00020 0.86 -3.9
4,348 - A4249_RS00020 0.86 -0.9
4,348 - A4249_RS00020 0.86 -2.6
4,348 - A4249_RS00020 0.86 -5.0
4,348 - A4249_RS00020 0.86 -2.6
4,348 - A4249_RS00020 0.86 -3.2
4,348 - A4249_RS00020 0.86 -4.1
4,348 - A4249_RS00020 0.86 -2.5
4,348 - A4249_RS00020 0.86 -1.6
4,349 + A4249_RS00020 0.86 -4.0
4,349 + A4249_RS00020 0.86 -4.6
4,349 + A4249_RS00020 0.86 -3.7
4,349 + A4249_RS00020 0.86 -4.6
4,349 + A4249_RS00020 0.86 -2.8
4,349 + A4249_RS00020 0.86 -2.9
4,349 + A4249_RS00020 0.86 -2.4
4,349 + A4249_RS00020 0.86 -2.4
4,350 - A4249_RS00020 0.86 +0.4
4,350 - A4249_RS00020 0.86 -3.7
4,350 - A4249_RS00020 0.86 -2.4
4,350 - A4249_RS00020 0.86 -1.2
4,350 - A4249_RS00020 0.86 -2.4
4,404 + A4249_RS00020 0.90 -1.2
4,404 + A4249_RS00020 0.90 -1.2
4,405 - -0.6
4,405 - -4.0
4,405 - -1.9
4,405 - -5.1
4,406 + -4.3
4,406 + -2.9
4,406 + +0.4
4,406 + -4.9
4,406 + -2.2
4,406 + -4.0
4,406 + -3.7
4,406 + -2.6
4,407 - -0.6
4,407 - +1.4
4,407 - -3.4
4,407 - +0.4
4,407 - -4.1
4,407 - -6.7
4,407 - -3.3
4,407 - -3.8
4,487 + -3.4
4,487 + -4.0
4,487 + -1.9
4,488 - -1.6
4,627 - +0.4

Or see this region's nucleotide sequence