Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00010

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00010 and A4249_RS00015 are separated by 93 nucleotidesA4249_RS00015 and A4249_RS00020 are separated by 6 nucleotides A4249_RS00010: A4249_RS00010 - homoserine kinase, at 1,756 to 2,700 _RS00010 A4249_RS00015: A4249_RS00015 - CsbD family protein, at 2,794 to 3,108 _RS00015 A4249_RS00020: A4249_RS00020 - threonine synthase, at 3,115 to 4,548 _RS00020 Position (kb) 1 2 3Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 0.906 kb on + strandat 0.907 kb on - strandat 1.623 kb on + strandat 1.623 kb on + strandat 1.623 kb on + strandat 1.624 kb on - strandat 1.624 kb on - strandat 1.744 kb on + strandat 1.744 kb on + strandat 1.744 kb on + strandat 1.745 kb on - strandat 1.745 kb on - strandat 1.750 kb on - strandat 1.810 kb on + strandat 1.863 kb on + strand, within A4249_RS00010at 1.864 kb on - strand, within A4249_RS00010at 1.864 kb on - strand, within A4249_RS00010at 1.870 kb on + strand, within A4249_RS00010at 1.870 kb on + strand, within A4249_RS00010at 1.870 kb on + strand, within A4249_RS00010at 1.871 kb on - strand, within A4249_RS00010at 1.871 kb on - strand, within A4249_RS00010at 1.871 kb on - strand, within A4249_RS00010at 2.336 kb on - strand, within A4249_RS00010at 2.336 kb on - strand, within A4249_RS00010at 2.336 kb on - strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.392 kb on + strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.393 kb on - strand, within A4249_RS00010at 2.419 kb on + strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.420 kb on - strand, within A4249_RS00010at 2.506 kb on + strand, within A4249_RS00010at 2.506 kb on + strand, within A4249_RS00010at 2.507 kb on - strand, within A4249_RS00010at 2.899 kb on + strand, within A4249_RS00015at 2.899 kb on + strand, within A4249_RS00015at 2.900 kb on - strand, within A4249_RS00015at 2.900 kb on - strand, within A4249_RS00015at 2.902 kb on - strand, within A4249_RS00015at 3.062 kb on + strand, within A4249_RS00015at 3.062 kb on + strand, within A4249_RS00015at 3.106 kb on + strandat 3.107 kb on - strandat 3.116 kb on + strandat 3.117 kb on - strandat 3.117 kb on - strandat 3.257 kb on - strandat 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.383 kb on + strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.384 kb on - strand, within A4249_RS00020at 3.626 kb on + strand, within A4249_RS00020at 3.626 kb on + strand, within A4249_RS00020at 3.627 kb on - strand, within A4249_RS00020at 3.627 kb on - strand, within A4249_RS00020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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906 + -4.7
907 - -1.0
1,623 + -3.5
1,623 + -1.2
1,623 + -5.6
1,624 - -2.9
1,624 - -2.7
1,744 + -3.8
1,744 + -4.3
1,744 + -1.6
1,745 - -1.9
1,745 - -2.8
1,750 - -1.6
1,810 + -3.3
1,863 + A4249_RS00010 0.11 -3.6
1,864 - A4249_RS00010 0.11 -3.2
1,864 - A4249_RS00010 0.11 -2.6
1,870 + A4249_RS00010 0.12 -2.2
1,870 + A4249_RS00010 0.12 -1.6
1,870 + A4249_RS00010 0.12 +0.4
1,871 - A4249_RS00010 0.12 -3.5
1,871 - A4249_RS00010 0.12 -1.2
1,871 - A4249_RS00010 0.12 -0.6
2,336 - A4249_RS00010 0.61 -3.5
2,336 - A4249_RS00010 0.61 -4.7
2,336 - A4249_RS00010 0.61 -1.2
2,392 + A4249_RS00010 0.67 -3.2
2,392 + A4249_RS00010 0.67 -2.9
2,392 + A4249_RS00010 0.67 -4.1
2,393 - A4249_RS00010 0.67 -3.3
2,393 - A4249_RS00010 0.67 -3.1
2,393 - A4249_RS00010 0.67 -4.5
2,393 - A4249_RS00010 0.67 -0.6
2,393 - A4249_RS00010 0.67 -3.2
2,419 + A4249_RS00010 0.70 -1.2
2,420 - A4249_RS00010 0.70 -2.6
2,420 - A4249_RS00010 0.70 -1.2
2,420 - A4249_RS00010 0.70 -0.4
2,506 + A4249_RS00010 0.79 -4.0
2,506 + A4249_RS00010 0.79 -2.6
2,507 - A4249_RS00010 0.79 +0.4
2,899 + A4249_RS00015 0.33 -0.3
2,899 + A4249_RS00015 0.33 +0.1
2,900 - A4249_RS00015 0.34 +0.0
2,900 - A4249_RS00015 0.34 -0.8
2,902 - A4249_RS00015 0.34 +0.2
3,062 + A4249_RS00015 0.85 +0.2
3,062 + A4249_RS00015 0.85 -0.4
3,106 + -0.3
3,107 - -0.6
3,116 + -1.5
3,117 - -0.8
3,117 - +0.0
3,257 - -1.9
3,383 + A4249_RS00020 0.19 -3.8
3,383 + A4249_RS00020 0.19 -2.4
3,383 + A4249_RS00020 0.19 -1.9
3,383 + A4249_RS00020 0.19 -1.2
3,383 + A4249_RS00020 0.19 -3.0
3,384 - A4249_RS00020 0.19 -2.4
3,384 - A4249_RS00020 0.19 -2.6
3,384 - A4249_RS00020 0.19 -2.6
3,384 - A4249_RS00020 0.19 -4.8
3,626 + A4249_RS00020 0.36 -4.5
3,626 + A4249_RS00020 0.36 -2.7
3,627 - A4249_RS00020 0.36 -2.9
3,627 - A4249_RS00020 0.36 -2.8

Or see this region's nucleotide sequence