Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qor and ppa are separated by 309 nucleotides ppa and OKGIIK_16985 are separated by 96 nucleotides
OKGIIK_16975: qor - zinc-binding alcohol dehydrogenase family protein, at 3,725,340 to 3,726,356
qor
OKGIIK_16980: ppa - inorganic diphosphatase, at 3,726,666 to 3,727,205
ppa
OKGIIK_16985: OKGIIK_16985 - Proline dioxygenase, at 3,727,302 to 3,728,156
_16985
Position (kb)
3726
3727
3728 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3725.671 kb on + strand, within qor at 3725.672 kb on - strand, within qor at 3725.672 kb on - strand, within qor at 3725.672 kb on - strand, within qor at 3725.672 kb on - strand, within qor at 3726.091 kb on + strand, within qor at 3726.092 kb on - strand, within qor at 3726.092 kb on - strand, within qor at 3726.092 kb on - strand, within qor at 3726.092 kb on - strand, within qor at 3726.092 kb on - strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.094 kb on + strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.095 kb on - strand, within qor at 3726.163 kb on + strand, within qor at 3726.164 kb on - strand, within qor at 3726.331 kb on + strand at 3726.332 kb on - strand at 3726.332 kb on - strand at 3726.332 kb on - strand at 3726.447 kb on - strand at 3726.536 kb on + strand at 3726.536 kb on + strand at 3726.536 kb on + strand at 3726.536 kb on + strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3726.537 kb on - strand at 3727.251 kb on - strand at 3727.324 kb on + strand at 3727.324 kb on + strand at 3727.324 kb on + strand at 3727.324 kb on + strand at 3727.324 kb on + strand at 3727.325 kb on - strand at 3727.417 kb on + strand, within OKGIIK_16985 at 3727.417 kb on + strand, within OKGIIK_16985 at 3727.418 kb on - strand, within OKGIIK_16985 at 3727.418 kb on - strand, within OKGIIK_16985 at 3727.426 kb on + strand, within OKGIIK_16985 at 3727.426 kb on + strand, within OKGIIK_16985 at 3727.426 kb on + strand, within OKGIIK_16985 at 3727.426 kb on + strand, within OKGIIK_16985 at 3727.426 kb on + strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.427 kb on - strand, within OKGIIK_16985 at 3727.510 kb on + strand, within OKGIIK_16985 at 3727.510 kb on + strand, within OKGIIK_16985 at 3727.510 kb on + strand, within OKGIIK_16985 at 3727.510 kb on + strand, within OKGIIK_16985 at 3727.510 kb on + strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.511 kb on - strand, within OKGIIK_16985 at 3727.561 kb on + strand, within OKGIIK_16985 at 3727.562 kb on - strand, within OKGIIK_16985 at 3727.603 kb on + strand, within OKGIIK_16985 at 3727.603 kb on + strand, within OKGIIK_16985 at 3727.603 kb on + strand, within OKGIIK_16985 at 3727.603 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.621 kb on + strand, within OKGIIK_16985 at 3727.622 kb on - strand, within OKGIIK_16985 at 3727.622 kb on - strand, within OKGIIK_16985 at 3727.622 kb on - strand, within OKGIIK_16985 at 3727.622 kb on - strand, within OKGIIK_16985 at 3727.622 kb on - strand, within OKGIIK_16985 at 3728.047 kb on + strand, within OKGIIK_16985 at 3728.047 kb on + strand, within OKGIIK_16985 at 3728.191 kb on + strand at 3728.192 kb on - strand at 3728.192 kb on - strand at 3728.196 kb on + strand at 3728.196 kb on + strand at 3728.197 kb on - strand at 3728.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 3,725,671 + qor OKGIIK_16975 0.33 -0.2 3,725,672 - qor OKGIIK_16975 0.33 +0.3 3,725,672 - qor OKGIIK_16975 0.33 -1.4 3,725,672 - qor OKGIIK_16975 0.33 -1.3 3,725,672 - qor OKGIIK_16975 0.33 -2.1 3,726,091 + qor OKGIIK_16975 0.74 +0.4 3,726,092 - qor OKGIIK_16975 0.74 -1.3 3,726,092 - qor OKGIIK_16975 0.74 +0.9 3,726,092 - qor OKGIIK_16975 0.74 -0.7 3,726,092 - qor OKGIIK_16975 0.74 -0.2 3,726,092 - qor OKGIIK_16975 0.74 -1.3 3,726,094 + qor OKGIIK_16975 0.74 -0.5 3,726,094 + qor OKGIIK_16975 0.74 -0.7 3,726,094 + qor OKGIIK_16975 0.74 +0.9 3,726,094 + qor OKGIIK_16975 0.74 -0.6 3,726,094 + qor OKGIIK_16975 0.74 +0.4 3,726,094 + qor OKGIIK_16975 0.74 +0.0 3,726,094 + qor OKGIIK_16975 0.74 -1.4 3,726,094 + qor OKGIIK_16975 0.74 -1.5 3,726,095 - qor OKGIIK_16975 0.74 +1.4 3,726,095 - qor OKGIIK_16975 0.74 +1.3 3,726,095 - qor OKGIIK_16975 0.74 -0.4 3,726,095 - qor OKGIIK_16975 0.74 -0.7 3,726,095 - qor OKGIIK_16975 0.74 -1.6 3,726,095 - qor OKGIIK_16975 0.74 -0.4 3,726,095 - qor OKGIIK_16975 0.74 +0.3 3,726,095 - qor OKGIIK_16975 0.74 -0.7 3,726,095 - qor OKGIIK_16975 0.74 -0.6 3,726,095 - qor OKGIIK_16975 0.74 +0.6 3,726,095 - qor OKGIIK_16975 0.74 +0.7 3,726,095 - qor OKGIIK_16975 0.74 -1.1 3,726,163 + qor OKGIIK_16975 0.81 +0.6 3,726,164 - qor OKGIIK_16975 0.81 +1.9 3,726,331 + -0.9 3,726,332 - -1.1 3,726,332 - +0.2 3,726,332 - -1.1 3,726,447 - -0.1 3,726,536 + -0.6 3,726,536 + -0.3 3,726,536 + -1.5 3,726,536 + +0.3 3,726,537 - +1.0 3,726,537 - -3.0 3,726,537 - -0.7 3,726,537 - -0.5 3,726,537 - -1.0 3,726,537 - -2.5 3,726,537 - +0.4 3,726,537 - -0.7 3,727,251 - -3.0 3,727,324 + -0.4 3,727,324 + +1.2 3,727,324 + -2.0 3,727,324 + -0.1 3,727,324 + +0.0 3,727,325 - -2.9 3,727,417 + OKGIIK_16985 0.13 +1.3 3,727,417 + OKGIIK_16985 0.13 -0.1 3,727,418 - OKGIIK_16985 0.14 -0.1 3,727,418 - OKGIIK_16985 0.14 +0.0 3,727,426 + OKGIIK_16985 0.15 +0.3 3,727,426 + OKGIIK_16985 0.15 -1.3 3,727,426 + OKGIIK_16985 0.15 -1.4 3,727,426 + OKGIIK_16985 0.15 +0.8 3,727,426 + OKGIIK_16985 0.15 -1.0 3,727,427 - OKGIIK_16985 0.15 -0.7 3,727,427 - OKGIIK_16985 0.15 -0.7 3,727,427 - OKGIIK_16985 0.15 +1.5 3,727,427 - OKGIIK_16985 0.15 -1.5 3,727,427 - OKGIIK_16985 0.15 +0.5 3,727,427 - OKGIIK_16985 0.15 -0.3 3,727,510 + OKGIIK_16985 0.24 +0.2 3,727,510 + OKGIIK_16985 0.24 +0.9 3,727,510 + OKGIIK_16985 0.24 -0.9 3,727,510 + OKGIIK_16985 0.24 -0.5 3,727,510 + OKGIIK_16985 0.24 +0.8 3,727,511 - OKGIIK_16985 0.24 +0.4 3,727,511 - OKGIIK_16985 0.24 +0.0 3,727,511 - OKGIIK_16985 0.24 -1.2 3,727,511 - OKGIIK_16985 0.24 -0.9 3,727,511 - OKGIIK_16985 0.24 +1.6 3,727,511 - OKGIIK_16985 0.24 +0.0 3,727,561 + OKGIIK_16985 0.30 -0.2 3,727,562 - OKGIIK_16985 0.30 -1.4 3,727,603 + OKGIIK_16985 0.35 -0.2 3,727,603 + OKGIIK_16985 0.35 -2.2 3,727,603 + OKGIIK_16985 0.35 -0.1 3,727,603 + OKGIIK_16985 0.35 +1.3 3,727,621 + OKGIIK_16985 0.37 +0.5 3,727,621 + OKGIIK_16985 0.37 -0.5 3,727,621 + OKGIIK_16985 0.37 -0.7 3,727,621 + OKGIIK_16985 0.37 -0.7 3,727,621 + OKGIIK_16985 0.37 -0.1 3,727,621 + OKGIIK_16985 0.37 -2.0 3,727,621 + OKGIIK_16985 0.37 +0.3 3,727,622 - OKGIIK_16985 0.37 -1.2 3,727,622 - OKGIIK_16985 0.37 -0.9 3,727,622 - OKGIIK_16985 0.37 +0.9 3,727,622 - OKGIIK_16985 0.37 -0.2 3,727,622 - OKGIIK_16985 0.37 -0.2 3,728,047 + OKGIIK_16985 0.87 -0.2 3,728,047 + OKGIIK_16985 0.87 +0.8 3,728,191 + +1.0 3,728,192 - -0.9 3,728,192 - +0.9 3,728,196 + +1.1 3,728,196 + -0.3 3,728,197 - -0.1 3,728,197 - +0.1
Or see this region's nucleotide sequence