Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16980

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntqor and ppa are separated by 309 nucleotidesppa and OKGIIK_16985 are separated by 96 nucleotides OKGIIK_16975: qor - zinc-binding alcohol dehydrogenase family protein, at 3,725,340 to 3,726,356 qor OKGIIK_16980: ppa - inorganic diphosphatase, at 3,726,666 to 3,727,205 ppa OKGIIK_16985: OKGIIK_16985 - Proline dioxygenase, at 3,727,302 to 3,728,156 _16985 Position (kb) 3726 3727 3728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3725.671 kb on + strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3726.091 kb on + strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.163 kb on + strand, within qorat 3726.164 kb on - strand, within qorat 3726.331 kb on + strandat 3726.332 kb on - strandat 3726.332 kb on - strandat 3726.332 kb on - strandat 3726.447 kb on - strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3727.251 kb on - strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.325 kb on - strandat 3727.417 kb on + strand, within OKGIIK_16985at 3727.417 kb on + strand, within OKGIIK_16985at 3727.418 kb on - strand, within OKGIIK_16985at 3727.418 kb on - strand, within OKGIIK_16985at 3727.426 kb on + strand, within OKGIIK_16985at 3727.426 kb on + strand, within OKGIIK_16985at 3727.426 kb on + strand, within OKGIIK_16985at 3727.426 kb on + strand, within OKGIIK_16985at 3727.426 kb on + strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.427 kb on - strand, within OKGIIK_16985at 3727.510 kb on + strand, within OKGIIK_16985at 3727.510 kb on + strand, within OKGIIK_16985at 3727.510 kb on + strand, within OKGIIK_16985at 3727.510 kb on + strand, within OKGIIK_16985at 3727.510 kb on + strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.511 kb on - strand, within OKGIIK_16985at 3727.561 kb on + strand, within OKGIIK_16985at 3727.562 kb on - strand, within OKGIIK_16985at 3727.603 kb on + strand, within OKGIIK_16985at 3727.603 kb on + strand, within OKGIIK_16985at 3727.603 kb on + strand, within OKGIIK_16985at 3727.603 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.621 kb on + strand, within OKGIIK_16985at 3727.622 kb on - strand, within OKGIIK_16985at 3727.622 kb on - strand, within OKGIIK_16985at 3727.622 kb on - strand, within OKGIIK_16985at 3727.622 kb on - strand, within OKGIIK_16985at 3727.622 kb on - strand, within OKGIIK_16985at 3728.047 kb on + strand, within OKGIIK_16985at 3728.047 kb on + strand, within OKGIIK_16985at 3728.191 kb on + strandat 3728.192 kb on - strandat 3728.192 kb on - strandat 3728.196 kb on + strandat 3728.196 kb on + strandat 3728.197 kb on - strandat 3728.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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3,725,671 + qor OKGIIK_16975 0.33 -0.2
3,725,672 - qor OKGIIK_16975 0.33 +0.3
3,725,672 - qor OKGIIK_16975 0.33 -1.4
3,725,672 - qor OKGIIK_16975 0.33 -1.3
3,725,672 - qor OKGIIK_16975 0.33 -2.1
3,726,091 + qor OKGIIK_16975 0.74 +0.4
3,726,092 - qor OKGIIK_16975 0.74 -1.3
3,726,092 - qor OKGIIK_16975 0.74 +0.9
3,726,092 - qor OKGIIK_16975 0.74 -0.7
3,726,092 - qor OKGIIK_16975 0.74 -0.2
3,726,092 - qor OKGIIK_16975 0.74 -1.3
3,726,094 + qor OKGIIK_16975 0.74 -0.5
3,726,094 + qor OKGIIK_16975 0.74 -0.7
3,726,094 + qor OKGIIK_16975 0.74 +0.9
3,726,094 + qor OKGIIK_16975 0.74 -0.6
3,726,094 + qor OKGIIK_16975 0.74 +0.4
3,726,094 + qor OKGIIK_16975 0.74 +0.0
3,726,094 + qor OKGIIK_16975 0.74 -1.4
3,726,094 + qor OKGIIK_16975 0.74 -1.5
3,726,095 - qor OKGIIK_16975 0.74 +1.4
3,726,095 - qor OKGIIK_16975 0.74 +1.3
3,726,095 - qor OKGIIK_16975 0.74 -0.4
3,726,095 - qor OKGIIK_16975 0.74 -0.7
3,726,095 - qor OKGIIK_16975 0.74 -1.6
3,726,095 - qor OKGIIK_16975 0.74 -0.4
3,726,095 - qor OKGIIK_16975 0.74 +0.3
3,726,095 - qor OKGIIK_16975 0.74 -0.7
3,726,095 - qor OKGIIK_16975 0.74 -0.6
3,726,095 - qor OKGIIK_16975 0.74 +0.6
3,726,095 - qor OKGIIK_16975 0.74 +0.7
3,726,095 - qor OKGIIK_16975 0.74 -1.1
3,726,163 + qor OKGIIK_16975 0.81 +0.6
3,726,164 - qor OKGIIK_16975 0.81 +1.9
3,726,331 + -0.9
3,726,332 - -1.1
3,726,332 - +0.2
3,726,332 - -1.1
3,726,447 - -0.1
3,726,536 + -0.6
3,726,536 + -0.3
3,726,536 + -1.5
3,726,536 + +0.3
3,726,537 - +1.0
3,726,537 - -3.0
3,726,537 - -0.7
3,726,537 - -0.5
3,726,537 - -1.0
3,726,537 - -2.5
3,726,537 - +0.4
3,726,537 - -0.7
3,727,251 - -3.0
3,727,324 + -0.4
3,727,324 + +1.2
3,727,324 + -2.0
3,727,324 + -0.1
3,727,324 + +0.0
3,727,325 - -2.9
3,727,417 + OKGIIK_16985 0.13 +1.3
3,727,417 + OKGIIK_16985 0.13 -0.1
3,727,418 - OKGIIK_16985 0.14 -0.1
3,727,418 - OKGIIK_16985 0.14 +0.0
3,727,426 + OKGIIK_16985 0.15 +0.3
3,727,426 + OKGIIK_16985 0.15 -1.3
3,727,426 + OKGIIK_16985 0.15 -1.4
3,727,426 + OKGIIK_16985 0.15 +0.8
3,727,426 + OKGIIK_16985 0.15 -1.0
3,727,427 - OKGIIK_16985 0.15 -0.7
3,727,427 - OKGIIK_16985 0.15 -0.7
3,727,427 - OKGIIK_16985 0.15 +1.5
3,727,427 - OKGIIK_16985 0.15 -1.5
3,727,427 - OKGIIK_16985 0.15 +0.5
3,727,427 - OKGIIK_16985 0.15 -0.3
3,727,510 + OKGIIK_16985 0.24 +0.2
3,727,510 + OKGIIK_16985 0.24 +0.9
3,727,510 + OKGIIK_16985 0.24 -0.9
3,727,510 + OKGIIK_16985 0.24 -0.5
3,727,510 + OKGIIK_16985 0.24 +0.8
3,727,511 - OKGIIK_16985 0.24 +0.4
3,727,511 - OKGIIK_16985 0.24 +0.0
3,727,511 - OKGIIK_16985 0.24 -1.2
3,727,511 - OKGIIK_16985 0.24 -0.9
3,727,511 - OKGIIK_16985 0.24 +1.6
3,727,511 - OKGIIK_16985 0.24 +0.0
3,727,561 + OKGIIK_16985 0.30 -0.2
3,727,562 - OKGIIK_16985 0.30 -1.4
3,727,603 + OKGIIK_16985 0.35 -0.2
3,727,603 + OKGIIK_16985 0.35 -2.2
3,727,603 + OKGIIK_16985 0.35 -0.1
3,727,603 + OKGIIK_16985 0.35 +1.3
3,727,621 + OKGIIK_16985 0.37 +0.5
3,727,621 + OKGIIK_16985 0.37 -0.5
3,727,621 + OKGIIK_16985 0.37 -0.7
3,727,621 + OKGIIK_16985 0.37 -0.7
3,727,621 + OKGIIK_16985 0.37 -0.1
3,727,621 + OKGIIK_16985 0.37 -2.0
3,727,621 + OKGIIK_16985 0.37 +0.3
3,727,622 - OKGIIK_16985 0.37 -1.2
3,727,622 - OKGIIK_16985 0.37 -0.9
3,727,622 - OKGIIK_16985 0.37 +0.9
3,727,622 - OKGIIK_16985 0.37 -0.2
3,727,622 - OKGIIK_16985 0.37 -0.2
3,728,047 + OKGIIK_16985 0.87 -0.2
3,728,047 + OKGIIK_16985 0.87 +0.8
3,728,191 + +1.0
3,728,192 - -0.9
3,728,192 - +0.9
3,728,196 + +1.1
3,728,196 + -0.3
3,728,197 - -0.1
3,728,197 - +0.1

Or see this region's nucleotide sequence