Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_15870 and OKGIIK_15875 are separated by 134 nucleotides OKGIIK_15875 and OKGIIK_15880 are separated by 704 nucleotides
OKGIIK_15870: OKGIIK_15870 - integrase, at 3,465,677 to 3,466,921
_15870
OKGIIK_15875: OKGIIK_15875 - hypothetical protein, at 3,467,056 to 3,467,310
_15875
OKGIIK_15880: OKGIIK_15880 - AlpA family transcriptional regulator, at 3,468,015 to 3,468,341
_15880
Position (kb)
3467
3468 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3466.197 kb on + strand, within OKGIIK_15870 at 3466.197 kb on + strand, within OKGIIK_15870 at 3466.197 kb on + strand, within OKGIIK_15870 at 3466.198 kb on - strand, within OKGIIK_15870 at 3466.198 kb on - strand, within OKGIIK_15870 at 3466.258 kb on + strand, within OKGIIK_15870 at 3466.258 kb on + strand, within OKGIIK_15870 at 3466.259 kb on - strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.343 kb on + strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.344 kb on - strand, within OKGIIK_15870 at 3466.346 kb on - strand, within OKGIIK_15870 at 3466.346 kb on - strand, within OKGIIK_15870 at 3466.346 kb on - strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.351 kb on + strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.352 kb on - strand, within OKGIIK_15870 at 3466.389 kb on + strand, within OKGIIK_15870 at 3466.390 kb on - strand, within OKGIIK_15870 at 3466.463 kb on + strand, within OKGIIK_15870 at 3466.463 kb on + strand, within OKGIIK_15870 at 3466.463 kb on + strand, within OKGIIK_15870 at 3466.463 kb on + strand, within OKGIIK_15870 at 3466.464 kb on - strand, within OKGIIK_15870 at 3466.464 kb on - strand, within OKGIIK_15870 at 3466.464 kb on - strand, within OKGIIK_15870 at 3466.464 kb on - strand, within OKGIIK_15870 at 3466.464 kb on - strand, within OKGIIK_15870 at 3466.531 kb on + strand, within OKGIIK_15870 at 3466.531 kb on + strand, within OKGIIK_15870 at 3466.532 kb on - strand, within OKGIIK_15870 at 3466.532 kb on - strand, within OKGIIK_15870 at 3466.601 kb on + strand, within OKGIIK_15870 at 3466.601 kb on + strand, within OKGIIK_15870 at 3466.602 kb on - strand, within OKGIIK_15870 at 3466.602 kb on - strand, within OKGIIK_15870 at 3466.602 kb on - strand, within OKGIIK_15870 at 3466.666 kb on - strand, within OKGIIK_15870 at 3466.666 kb on - strand, within OKGIIK_15870 at 3466.679 kb on + strand, within OKGIIK_15870 at 3466.679 kb on + strand, within OKGIIK_15870 at 3466.679 kb on + strand, within OKGIIK_15870 at 3466.679 kb on + strand, within OKGIIK_15870 at 3466.680 kb on - strand, within OKGIIK_15870 at 3466.680 kb on - strand, within OKGIIK_15870 at 3466.723 kb on + strand, within OKGIIK_15870 at 3466.724 kb on - strand, within OKGIIK_15870 at 3466.724 kb on - strand, within OKGIIK_15870 at 3466.724 kb on - strand, within OKGIIK_15870 at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.805 kb on + strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.806 kb on - strand at 3466.807 kb on + strand at 3466.807 kb on + strand at 3466.807 kb on + strand at 3466.808 kb on - strand at 3466.808 kb on - strand at 3466.862 kb on + strand at 3466.863 kb on - strand at 3466.863 kb on - strand at 3466.863 kb on - strand at 3467.028 kb on - strand at 3467.028 kb on - strand at 3467.028 kb on - strand at 3467.308 kb on + strand at 3467.377 kb on + strand at 3467.378 kb on + strand at 3467.378 kb on + strand at 3467.378 kb on + strand at 3467.378 kb on + strand at 3467.378 kb on + strand at 3467.379 kb on - strand at 3467.379 kb on - strand at 3467.379 kb on - strand at 3467.379 kb on - strand at 3467.379 kb on - strand at 3467.379 kb on - strand at 3467.381 kb on + strand at 3467.382 kb on - strand at 3467.665 kb on + strand at 3467.665 kb on + strand at 3467.666 kb on - strand at 3467.666 kb on - strand at 3467.666 kb on - strand at 3467.666 kb on - strand at 3467.666 kb on - strand at 3467.670 kb on + strand at 3467.671 kb on - strand at 3467.671 kb on - strand at 3467.671 kb on - strand at 3467.710 kb on + strand at 3467.710 kb on + strand at 3467.710 kb on + strand at 3467.710 kb on + strand at 3467.710 kb on + strand at 3467.710 kb on + strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.711 kb on - strand at 3467.760 kb on - strand at 3467.768 kb on + strand at 3467.768 kb on + strand at 3467.900 kb on - strand at 3468.149 kb on + strand, within OKGIIK_15880 at 3468.192 kb on + strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.193 kb on - strand, within OKGIIK_15880 at 3468.245 kb on + strand, within OKGIIK_15880 at 3468.246 kb on - strand, within OKGIIK_15880 at 3468.246 kb on - strand, within OKGIIK_15880 at 3468.246 kb on - strand, within OKGIIK_15880 at 3468.246 kb on - strand, within OKGIIK_15880
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 3,466,197 + OKGIIK_15870 0.42 -2.3 3,466,197 + OKGIIK_15870 0.42 -0.8 3,466,197 + OKGIIK_15870 0.42 -0.0 3,466,198 - OKGIIK_15870 0.42 -1.2 3,466,198 - OKGIIK_15870 0.42 +1.7 3,466,258 + OKGIIK_15870 0.47 -1.6 3,466,258 + OKGIIK_15870 0.47 -1.2 3,466,259 - OKGIIK_15870 0.47 -0.0 3,466,343 + OKGIIK_15870 0.53 -1.0 3,466,343 + OKGIIK_15870 0.53 +0.5 3,466,343 + OKGIIK_15870 0.53 -1.3 3,466,343 + OKGIIK_15870 0.53 +0.3 3,466,343 + OKGIIK_15870 0.53 -1.7 3,466,343 + OKGIIK_15870 0.53 -1.4 3,466,343 + OKGIIK_15870 0.53 -0.3 3,466,343 + OKGIIK_15870 0.53 +0.9 3,466,344 - OKGIIK_15870 0.54 +0.1 3,466,344 - OKGIIK_15870 0.54 -1.0 3,466,344 - OKGIIK_15870 0.54 +0.4 3,466,344 - OKGIIK_15870 0.54 -0.5 3,466,344 - OKGIIK_15870 0.54 -0.0 3,466,344 - OKGIIK_15870 0.54 -1.0 3,466,344 - OKGIIK_15870 0.54 +0.4 3,466,344 - OKGIIK_15870 0.54 -0.1 3,466,344 - OKGIIK_15870 0.54 -0.9 3,466,344 - OKGIIK_15870 0.54 +0.4 3,466,346 - OKGIIK_15870 0.54 -1.0 3,466,346 - OKGIIK_15870 0.54 -1.8 3,466,346 - OKGIIK_15870 0.54 -0.6 3,466,351 + OKGIIK_15870 0.54 -1.3 3,466,351 + OKGIIK_15870 0.54 +0.5 3,466,351 + OKGIIK_15870 0.54 +0.2 3,466,351 + OKGIIK_15870 0.54 +0.0 3,466,351 + OKGIIK_15870 0.54 -1.0 3,466,351 + OKGIIK_15870 0.54 -0.3 3,466,351 + OKGIIK_15870 0.54 -0.4 3,466,352 - OKGIIK_15870 0.54 -0.3 3,466,352 - OKGIIK_15870 0.54 +0.2 3,466,352 - OKGIIK_15870 0.54 -0.6 3,466,352 - OKGIIK_15870 0.54 -0.9 3,466,352 - OKGIIK_15870 0.54 -2.3 3,466,352 - OKGIIK_15870 0.54 -0.6 3,466,352 - OKGIIK_15870 0.54 -0.5 3,466,389 + OKGIIK_15870 0.57 -0.4 3,466,390 - OKGIIK_15870 0.57 -0.8 3,466,463 + OKGIIK_15870 0.63 -0.6 3,466,463 + OKGIIK_15870 0.63 -1.9 3,466,463 + OKGIIK_15870 0.63 +0.5 3,466,463 + OKGIIK_15870 0.63 -0.5 3,466,464 - OKGIIK_15870 0.63 +0.3 3,466,464 - OKGIIK_15870 0.63 +0.5 3,466,464 - OKGIIK_15870 0.63 -2.2 3,466,464 - OKGIIK_15870 0.63 +0.2 3,466,464 - OKGIIK_15870 0.63 -1.0 3,466,531 + OKGIIK_15870 0.69 -0.5 3,466,531 + OKGIIK_15870 0.69 -1.0 3,466,532 - OKGIIK_15870 0.69 -1.0 3,466,532 - OKGIIK_15870 0.69 -0.8 3,466,601 + OKGIIK_15870 0.74 -1.2 3,466,601 + OKGIIK_15870 0.74 -0.7 3,466,602 - OKGIIK_15870 0.74 +0.4 3,466,602 - OKGIIK_15870 0.74 -0.0 3,466,602 - OKGIIK_15870 0.74 -1.3 3,466,666 - OKGIIK_15870 0.79 +0.1 3,466,666 - OKGIIK_15870 0.79 -0.0 3,466,679 + OKGIIK_15870 0.80 -1.5 3,466,679 + OKGIIK_15870 0.80 +1.1 3,466,679 + OKGIIK_15870 0.80 -1.0 3,466,679 + OKGIIK_15870 0.80 -1.3 3,466,680 - OKGIIK_15870 0.81 -0.5 3,466,680 - OKGIIK_15870 0.81 +0.3 3,466,723 + OKGIIK_15870 0.84 +0.8 3,466,724 - OKGIIK_15870 0.84 -0.5 3,466,724 - OKGIIK_15870 0.84 +0.2 3,466,724 - OKGIIK_15870 0.84 -2.9 3,466,805 + -0.6 3,466,805 + -0.8 3,466,805 + -0.4 3,466,805 + -0.6 3,466,805 + -0.8 3,466,805 + +0.0 3,466,805 + -0.6 3,466,805 + -0.8 3,466,805 + +0.2 3,466,805 + -0.8 3,466,805 + +0.7 3,466,805 + -1.9 3,466,805 + -1.0 3,466,806 - -0.5 3,466,806 - -1.0 3,466,806 - -1.3 3,466,806 - +0.4 3,466,806 - +0.3 3,466,806 - -1.0 3,466,806 - -1.5 3,466,806 - -0.9 3,466,806 - -0.1 3,466,806 - -1.0 3,466,806 - -1.6 3,466,806 - +1.3 3,466,806 - +1.3 3,466,806 - -1.5 3,466,806 - -0.8 3,466,806 - -1.1 3,466,806 - -1.9 3,466,806 - -0.3 3,466,806 - -2.0 3,466,806 - -2.0 3,466,807 + -2.9 3,466,807 + +2.0 3,466,807 + -0.6 3,466,808 - +1.1 3,466,808 - -1.0 3,466,862 + -1.6 3,466,863 - +0.9 3,466,863 - -0.0 3,466,863 - -1.4 3,467,028 - +0.3 3,467,028 - -1.9 3,467,028 - -0.7 3,467,308 + +0.2 3,467,377 + +1.2 3,467,378 + -0.6 3,467,378 + -0.0 3,467,378 + -0.3 3,467,378 + +1.2 3,467,378 + +0.1 3,467,379 - -0.3 3,467,379 - +0.3 3,467,379 - +0.2 3,467,379 - -0.4 3,467,379 - -2.2 3,467,379 - -0.9 3,467,381 + -1.2 3,467,382 - +0.0 3,467,665 + -1.9 3,467,665 + -0.3 3,467,666 - -0.1 3,467,666 - -0.0 3,467,666 - +0.4 3,467,666 - +0.5 3,467,666 - -1.5 3,467,670 + -0.8 3,467,671 - -0.8 3,467,671 - -2.2 3,467,671 - -0.5 3,467,710 + +0.8 3,467,710 + -1.0 3,467,710 + +0.5 3,467,710 + +0.5 3,467,710 + +0.2 3,467,710 + +0.1 3,467,711 - +2.1 3,467,711 - -2.0 3,467,711 - +1.3 3,467,711 - -0.7 3,467,711 - -0.8 3,467,711 - +0.1 3,467,711 - +0.2 3,467,711 - -2.4 3,467,711 - -0.5 3,467,760 - +1.4 3,467,768 + -2.6 3,467,768 + -2.3 3,467,900 - -1.0 3,468,149 + OKGIIK_15880 0.41 -0.8 3,468,192 + OKGIIK_15880 0.54 +0.2 3,468,193 - OKGIIK_15880 0.54 -0.5 3,468,193 - OKGIIK_15880 0.54 -1.3 3,468,193 - OKGIIK_15880 0.54 -0.2 3,468,193 - OKGIIK_15880 0.54 -0.5 3,468,193 - OKGIIK_15880 0.54 -0.8 3,468,193 - OKGIIK_15880 0.54 -0.7 3,468,245 + OKGIIK_15880 0.70 -2.4 3,468,246 - OKGIIK_15880 0.71 +1.3 3,468,246 - OKGIIK_15880 0.71 -0.6 3,468,246 - OKGIIK_15880 0.71 +0.2 3,468,246 - OKGIIK_15880 0.71 +0.3
Or see this region's nucleotide sequence