Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11965

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_11960 and mscL are separated by 90 nucleotidesmscL and OKGIIK_11970 are separated by 179 nucleotides OKGIIK_11960: OKGIIK_11960 - Fumarylacetoacetate hydrolase, at 2,575,763 to 2,576,449 _11960 OKGIIK_11965: mscL - large-conductance mechanosensitive channel protein MscL, at 2,576,540 to 2,576,950 mscL OKGIIK_11970: OKGIIK_11970 - aminopeptidase, at 2,577,130 to 2,578,563 _11970 Position (kb) 2576 2577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2575.750 kb on + strandat 2575.750 kb on + strandat 2575.750 kb on + strandat 2575.769 kb on + strandat 2575.769 kb on + strandat 2575.769 kb on + strandat 2575.769 kb on + strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.770 kb on - strandat 2575.862 kb on + strand, within OKGIIK_11960at 2575.862 kb on + strand, within OKGIIK_11960at 2575.862 kb on + strand, within OKGIIK_11960at 2575.863 kb on - strand, within OKGIIK_11960at 2575.863 kb on - strand, within OKGIIK_11960at 2575.968 kb on - strand, within OKGIIK_11960at 2576.075 kb on + strand, within OKGIIK_11960at 2576.075 kb on + strand, within OKGIIK_11960at 2576.075 kb on + strand, within OKGIIK_11960at 2576.076 kb on - strand, within OKGIIK_11960at 2576.076 kb on - strand, within OKGIIK_11960at 2576.292 kb on + strand, within OKGIIK_11960at 2576.293 kb on - strand, within OKGIIK_11960at 2576.293 kb on - strand, within OKGIIK_11960at 2576.293 kb on - strand, within OKGIIK_11960at 2576.293 kb on - strand, within OKGIIK_11960at 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.481 kb on + strandat 2576.482 kb on - strandat 2576.482 kb on - strandat 2576.482 kb on - strandat 2576.482 kb on - strandat 2576.482 kb on - strandat 2576.482 kb on - strandat 2576.530 kb on + strandat 2576.530 kb on + strandat 2576.531 kb on - strandat 2576.531 kb on - strandat 2576.777 kb on + strand, within mscLat 2576.778 kb on - strand, within mscLat 2576.949 kb on - strandat 2576.972 kb on - strandat 2577.075 kb on + strandat 2577.075 kb on + strandat 2577.100 kb on + strandat 2577.100 kb on + strandat 2577.221 kb on + strandat 2577.271 kb on + strandat 2577.271 kb on + strandat 2577.271 kb on + strandat 2577.271 kb on + strandat 2577.272 kb on - strandat 2577.272 kb on - strandat 2577.272 kb on - strandat 2577.391 kb on + strand, within OKGIIK_11970at 2577.392 kb on - strand, within OKGIIK_11970at 2577.392 kb on - strand, within OKGIIK_11970at 2577.392 kb on - strand, within OKGIIK_11970at 2577.392 kb on - strand, within OKGIIK_11970at 2577.410 kb on - strand, within OKGIIK_11970at 2577.410 kb on - strand, within OKGIIK_11970at 2577.410 kb on - strand, within OKGIIK_11970at 2577.410 kb on - strand, within OKGIIK_11970at 2577.410 kb on - strand, within OKGIIK_11970at 2577.412 kb on - strand, within OKGIIK_11970at 2577.491 kb on - strand, within OKGIIK_11970at 2577.598 kb on + strand, within OKGIIK_11970at 2577.598 kb on + strand, within OKGIIK_11970at 2577.598 kb on + strand, within OKGIIK_11970at 2577.598 kb on + strand, within OKGIIK_11970at 2577.599 kb on - strand, within OKGIIK_11970at 2577.599 kb on - strand, within OKGIIK_11970at 2577.599 kb on - strand, within OKGIIK_11970at 2577.599 kb on - strand, within OKGIIK_11970at 2577.706 kb on + strand, within OKGIIK_11970at 2577.707 kb on - strand, within OKGIIK_11970at 2577.707 kb on - strand, within OKGIIK_11970at 2577.753 kb on + strand, within OKGIIK_11970at 2577.754 kb on - strand, within OKGIIK_11970at 2577.848 kb on - strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.901 kb on + strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970at 2577.902 kb on - strand, within OKGIIK_11970

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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2,575,750 + -1.4
2,575,750 + +0.2
2,575,750 + +1.0
2,575,769 + +0.8
2,575,769 + -1.2
2,575,769 + +1.0
2,575,769 + +0.0
2,575,770 - +0.6
2,575,770 - +1.2
2,575,770 - -0.2
2,575,770 - -1.0
2,575,770 - -1.9
2,575,770 - -2.8
2,575,770 - -2.2
2,575,770 - +0.8
2,575,770 - -1.0
2,575,770 - -1.5
2,575,770 - -0.8
2,575,770 - -0.2
2,575,862 + OKGIIK_11960 0.14 -1.7
2,575,862 + OKGIIK_11960 0.14 -0.5
2,575,862 + OKGIIK_11960 0.14 -0.7
2,575,863 - OKGIIK_11960 0.15 -0.8
2,575,863 - OKGIIK_11960 0.15 +0.1
2,575,968 - OKGIIK_11960 0.30 -0.2
2,576,075 + OKGIIK_11960 0.45 -1.2
2,576,075 + OKGIIK_11960 0.45 +1.5
2,576,075 + OKGIIK_11960 0.45 +0.5
2,576,076 - OKGIIK_11960 0.46 -0.8
2,576,076 - OKGIIK_11960 0.46 +0.4
2,576,292 + OKGIIK_11960 0.77 +0.0
2,576,293 - OKGIIK_11960 0.77 -0.0
2,576,293 - OKGIIK_11960 0.77 -1.7
2,576,293 - OKGIIK_11960 0.77 +0.3
2,576,293 - OKGIIK_11960 0.77 -0.2
2,576,481 + -2.4
2,576,481 + +1.0
2,576,481 + -0.4
2,576,481 + +0.2
2,576,481 + -1.5
2,576,481 + -1.5
2,576,481 + -0.8
2,576,481 + -1.2
2,576,481 + -1.7
2,576,481 + +1.2
2,576,481 + +0.5
2,576,481 + -1.5
2,576,481 + -0.6
2,576,481 + +1.9
2,576,481 + -0.1
2,576,481 + -0.3
2,576,481 + -0.1
2,576,481 + +1.5
2,576,481 + +1.0
2,576,482 - +0.2
2,576,482 - -0.7
2,576,482 - +0.8
2,576,482 - -0.1
2,576,482 - +0.1
2,576,482 - +0.3
2,576,530 + +0.8
2,576,530 + -0.2
2,576,531 - -0.4
2,576,531 - -1.0
2,576,777 + mscL OKGIIK_11965 0.58 -3.0
2,576,778 - mscL OKGIIK_11965 0.58 +0.0
2,576,949 - -0.6
2,576,972 - -0.3
2,577,075 + +0.1
2,577,075 + -1.7
2,577,100 + -0.1
2,577,100 + +0.9
2,577,221 + +0.2
2,577,271 + -0.9
2,577,271 + +0.6
2,577,271 + -0.1
2,577,271 + +1.0
2,577,272 - -0.5
2,577,272 - +0.9
2,577,272 - -0.5
2,577,391 + OKGIIK_11970 0.18 -0.3
2,577,392 - OKGIIK_11970 0.18 +0.8
2,577,392 - OKGIIK_11970 0.18 -0.0
2,577,392 - OKGIIK_11970 0.18 -1.7
2,577,392 - OKGIIK_11970 0.18 -0.8
2,577,410 - OKGIIK_11970 0.20 +1.6
2,577,410 - OKGIIK_11970 0.20 -1.3
2,577,410 - OKGIIK_11970 0.20 -1.4
2,577,410 - OKGIIK_11970 0.20 +0.1
2,577,410 - OKGIIK_11970 0.20 +0.9
2,577,412 - OKGIIK_11970 0.20 +0.3
2,577,491 - OKGIIK_11970 0.25 +0.8
2,577,598 + OKGIIK_11970 0.33 +0.2
2,577,598 + OKGIIK_11970 0.33 -0.5
2,577,598 + OKGIIK_11970 0.33 +0.1
2,577,598 + OKGIIK_11970 0.33 -0.1
2,577,599 - OKGIIK_11970 0.33 +1.2
2,577,599 - OKGIIK_11970 0.33 +0.4
2,577,599 - OKGIIK_11970 0.33 +0.8
2,577,599 - OKGIIK_11970 0.33 -1.0
2,577,706 + OKGIIK_11970 0.40 +1.8
2,577,707 - OKGIIK_11970 0.40 -2.6
2,577,707 - OKGIIK_11970 0.40 -0.2
2,577,753 + OKGIIK_11970 0.43 +0.0
2,577,754 - OKGIIK_11970 0.44 +1.3
2,577,848 - OKGIIK_11970 0.50 +0.5
2,577,901 + OKGIIK_11970 0.54 +1.8
2,577,901 + OKGIIK_11970 0.54 -0.2
2,577,901 + OKGIIK_11970 0.54 +0.3
2,577,901 + OKGIIK_11970 0.54 +1.0
2,577,901 + OKGIIK_11970 0.54 -0.5
2,577,901 + OKGIIK_11970 0.54 -2.1
2,577,902 - OKGIIK_11970 0.54 -2.5
2,577,902 - OKGIIK_11970 0.54 +1.6
2,577,902 - OKGIIK_11970 0.54 +0.3
2,577,902 - OKGIIK_11970 0.54 +0.5
2,577,902 - OKGIIK_11970 0.54 -2.1
2,577,902 - OKGIIK_11970 0.54 +0.5

Or see this region's nucleotide sequence