Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08470

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08460 and OKGIIK_08465 are separated by 97 nucleotidesOKGIIK_08465 and sdhE overlap by 29 nucleotidessdhE and sdhB,frdB are separated by 206 nucleotides OKGIIK_08460: OKGIIK_08460 - lipoprotein-releasing ABC transporter permease subunit, at 1,855,008 to 1,856,249 _08460 OKGIIK_08465: OKGIIK_08465 - Membrane-bound toxin component of toxin-antitoxin system, at 1,856,347 to 1,856,787 _08465 OKGIIK_08470: sdhE - Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module, at 1,856,759 to 1,857,007 sdhE OKGIIK_08475: sdhB,frdB - succinate dehydrogenase iron-sulfur subunit, at 1,857,214 to 1,857,996 sdhB,frdB Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -2 -1 0 1 2at 1856.298 kb on - strandat 1856.299 kb on - strandat 1856.299 kb on - strandat 1856.306 kb on - strandat 1856.306 kb on - strandat 1856.306 kb on - strandat 1856.306 kb on - strandat 1856.306 kb on - strandat 1856.306 kb on - strandat 1856.501 kb on + strand, within OKGIIK_08465at 1856.501 kb on + strand, within OKGIIK_08465at 1856.501 kb on + strand, within OKGIIK_08465at 1856.501 kb on + strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.502 kb on - strand, within OKGIIK_08465at 1856.530 kb on + strand, within OKGIIK_08465at 1856.531 kb on - strand, within OKGIIK_08465at 1856.531 kb on - strand, within OKGIIK_08465at 1857.007 kb on + strandat 1857.007 kb on + strandat 1857.007 kb on + strandat 1857.008 kb on - strandat 1857.008 kb on - strandat 1857.008 kb on - strandat 1857.008 kb on - strandat 1857.008 kb on - strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.090 kb on + strandat 1857.091 kb on - strandat 1857.091 kb on - strandat 1857.091 kb on - strandat 1857.091 kb on - strandat 1857.091 kb on - strandat 1857.117 kb on + strandat 1857.117 kb on + strandat 1857.117 kb on + strandat 1857.215 kb on + strandat 1858.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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1,856,298 - -2.4
1,856,299 - +2.2
1,856,299 - -0.4
1,856,306 - -0.4
1,856,306 - +0.9
1,856,306 - +0.7
1,856,306 - +0.3
1,856,306 - +0.5
1,856,306 - +0.6
1,856,501 + OKGIIK_08465 0.35 -0.1
1,856,501 + OKGIIK_08465 0.35 -0.7
1,856,501 + OKGIIK_08465 0.35 -0.3
1,856,501 + OKGIIK_08465 0.35 +1.0
1,856,502 - OKGIIK_08465 0.35 -0.1
1,856,502 - OKGIIK_08465 0.35 -0.3
1,856,502 - OKGIIK_08465 0.35 -0.4
1,856,502 - OKGIIK_08465 0.35 +0.7
1,856,502 - OKGIIK_08465 0.35 -2.0
1,856,502 - OKGIIK_08465 0.35 +0.9
1,856,502 - OKGIIK_08465 0.35 -2.0
1,856,502 - OKGIIK_08465 0.35 -0.2
1,856,530 + OKGIIK_08465 0.41 +0.1
1,856,531 - OKGIIK_08465 0.42 +0.1
1,856,531 - OKGIIK_08465 0.42 +0.2
1,857,007 + +0.0
1,857,007 + -0.8
1,857,007 + -0.7
1,857,008 - -1.4
1,857,008 - -0.7
1,857,008 - -0.7
1,857,008 - -0.7
1,857,008 - -1.1
1,857,090 + +0.6
1,857,090 + +0.3
1,857,090 + +1.1
1,857,090 + +2.5
1,857,090 + +0.9
1,857,090 + -2.2
1,857,090 + -0.5
1,857,090 + -0.7
1,857,090 + +0.5
1,857,090 + +1.3
1,857,091 - -0.3
1,857,091 - -0.3
1,857,091 - +0.1
1,857,091 - -1.5
1,857,091 - +0.6
1,857,117 + +0.1
1,857,117 + +1.2
1,857,117 + +0.3
1,857,215 + -0.8
1,858,003 - +0.0

Or see this region's nucleotide sequence