Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpB and trpA overlap by 4 nucleotides trpA and accD are separated by 51 nucleotides accD and OKGIIK_04860 are separated by 426 nucleotides OKGIIK_04860 and OKGIIK_04865 overlap by 32 nucleotides
OKGIIK_04845: trpB - tryptophan synthase subunit beta, at 1,053,656 to 1,054,867
trpB
OKGIIK_04850: trpA - tryptophan synthase subunit alpha, at 1,054,864 to 1,055,664
trpA
OKGIIK_04855: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,055,716 to 1,056,585
accD
OKGIIK_04860: OKGIIK_04860 - phosphatase PAP2 family protein, at 1,057,012 to 1,057,575
_04860
OKGIIK_04865: OKGIIK_04865 - Glycosyl transferase, at 1,057,544 to 1,058,704
_04865
Position (kb)
1055
1056
1057 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1054.863 kb on + strand at 1054.863 kb on + strand at 1054.863 kb on + strand at 1054.863 kb on + strand at 1054.864 kb on - strand at 1054.864 kb on - strand at 1054.864 kb on - strand at 1054.864 kb on - strand at 1055.167 kb on + strand, within trpA at 1055.168 kb on - strand, within trpA at 1055.383 kb on + strand, within trpA at 1055.383 kb on + strand, within trpA at 1055.384 kb on - strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1055.386 kb on + strand, within trpA at 1056.727 kb on + strand at 1056.728 kb on - strand at 1056.728 kb on - strand at 1056.728 kb on - strand at 1056.728 kb on - strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.815 kb on + strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.816 kb on - strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.947 kb on + strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.948 kb on - strand at 1056.952 kb on + strand at 1056.953 kb on - strand at 1056.953 kb on - strand at 1056.953 kb on - strand at 1057.094 kb on + strand, within OKGIIK_04860 at 1057.095 kb on - strand, within OKGIIK_04860 at 1057.170 kb on - strand, within OKGIIK_04860 at 1057.170 kb on - strand, within OKGIIK_04860 at 1057.212 kb on + strand, within OKGIIK_04860 at 1057.212 kb on + strand, within OKGIIK_04860 at 1057.212 kb on + strand, within OKGIIK_04860 at 1057.213 kb on - strand, within OKGIIK_04860 at 1057.213 kb on - strand, within OKGIIK_04860 at 1057.213 kb on - strand, within OKGIIK_04860 at 1057.319 kb on + strand, within OKGIIK_04860 at 1057.319 kb on + strand, within OKGIIK_04860 at 1057.320 kb on - strand, within OKGIIK_04860 at 1057.416 kb on - strand, within OKGIIK_04860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 1,054,863 + +1.1 1,054,863 + -0.1 1,054,863 + -2.2 1,054,863 + -0.1 1,054,864 - -0.1 1,054,864 - -1.9 1,054,864 - -0.9 1,054,864 - -0.4 1,055,167 + trpA OKGIIK_04850 0.38 -0.3 1,055,168 - trpA OKGIIK_04850 0.38 +0.9 1,055,383 + trpA OKGIIK_04850 0.65 -1.3 1,055,383 + trpA OKGIIK_04850 0.65 +0.3 1,055,384 - trpA OKGIIK_04850 0.65 -1.0 1,055,386 + trpA OKGIIK_04850 0.65 -0.7 1,055,386 + trpA OKGIIK_04850 0.65 -0.1 1,055,386 + trpA OKGIIK_04850 0.65 -0.7 1,055,386 + trpA OKGIIK_04850 0.65 +1.5 1,055,386 + trpA OKGIIK_04850 0.65 -2.1 1,055,386 + trpA OKGIIK_04850 0.65 -0.8 1,055,386 + trpA OKGIIK_04850 0.65 -0.1 1,055,386 + trpA OKGIIK_04850 0.65 -1.1 1,056,727 + -1.0 1,056,728 - -0.7 1,056,728 - +0.8 1,056,728 - -0.4 1,056,728 - -1.3 1,056,815 + -1.1 1,056,815 + +0.6 1,056,815 + +0.6 1,056,815 + +0.9 1,056,815 + -0.1 1,056,815 + -1.1 1,056,815 + +0.3 1,056,815 + -0.4 1,056,815 + +1.5 1,056,815 + +0.5 1,056,815 + -0.7 1,056,816 - -0.3 1,056,816 - +0.0 1,056,816 - +0.5 1,056,816 - -0.1 1,056,816 - -1.3 1,056,816 - -1.9 1,056,816 - +1.2 1,056,816 - -0.8 1,056,947 + +0.2 1,056,947 + +0.5 1,056,947 + +0.2 1,056,947 + -1.3 1,056,947 + -2.1 1,056,947 + -1.8 1,056,947 + -0.4 1,056,947 + -0.6 1,056,947 + +0.8 1,056,948 - +0.9 1,056,948 - +0.6 1,056,948 - +0.1 1,056,948 - +0.9 1,056,948 - -1.0 1,056,948 - -0.4 1,056,948 - -1.4 1,056,948 - -0.4 1,056,948 - -0.0 1,056,948 - -1.4 1,056,948 - +0.2 1,056,948 - +0.5 1,056,948 - -0.1 1,056,948 - +3.1 1,056,948 - -0.4 1,056,948 - +0.3 1,056,948 - -1.3 1,056,952 + -0.7 1,056,953 - +0.6 1,056,953 - -0.2 1,056,953 - -1.9 1,057,094 + OKGIIK_04860 0.15 -0.0 1,057,095 - OKGIIK_04860 0.15 +0.7 1,057,170 - OKGIIK_04860 0.28 -1.1 1,057,170 - OKGIIK_04860 0.28 -0.1 1,057,212 + OKGIIK_04860 0.35 -0.2 1,057,212 + OKGIIK_04860 0.35 -0.4 1,057,212 + OKGIIK_04860 0.35 +1.3 1,057,213 - OKGIIK_04860 0.36 +0.1 1,057,213 - OKGIIK_04860 0.36 +0.4 1,057,213 - OKGIIK_04860 0.36 -0.8 1,057,319 + OKGIIK_04860 0.54 +0.1 1,057,319 + OKGIIK_04860 0.54 -2.0 1,057,320 - OKGIIK_04860 0.55 +0.1 1,057,416 - OKGIIK_04860 0.72 -1.1
Or see this region's nucleotide sequence