Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04830

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_04825 and truA are separated by 104 nucleotidestruA and OKGIIK_04835 overlap by 4 nucleotidesOKGIIK_04835 and OKGIIK_04840 are separated by 5 nucleotides OKGIIK_04825: OKGIIK_04825 - Fimbrial protein FimV, at 1,048,685 to 1,051,072 _04825 OKGIIK_04830: truA - tRNA pseudouridine(38-40) synthase TruA, at 1,051,177 to 1,051,959 truA OKGIIK_04835: OKGIIK_04835 - phosphoribosylanthranilate isomerase, at 1,051,956 to 1,052,579 _04835 OKGIIK_04840: OKGIIK_04840 - Transcription factor, at 1,052,585 to 1,053,589 _04840 Position (kb) 1051 1052Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.317 kb on + strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.318 kb on - strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.413 kb on + strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.414 kb on - strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.416 kb on + strand, within OKGIIK_04825at 1050.417 kb on - strand, within OKGIIK_04825at 1050.417 kb on - strand, within OKGIIK_04825at 1050.417 kb on - strand, within OKGIIK_04825at 1050.417 kb on - strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.464 kb on + strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.465 kb on - strand, within OKGIIK_04825at 1050.617 kb on + strand, within OKGIIK_04825at 1050.617 kb on + strand, within OKGIIK_04825at 1050.617 kb on + strand, within OKGIIK_04825at 1050.618 kb on - strand, within OKGIIK_04825at 1050.618 kb on - strand, within OKGIIK_04825at 1050.618 kb on - strand, within OKGIIK_04825at 1050.698 kb on + strand, within OKGIIK_04825at 1050.698 kb on + strand, within OKGIIK_04825at 1050.698 kb on + strand, within OKGIIK_04825at 1050.698 kb on + strand, within OKGIIK_04825at 1050.698 kb on + strand, within OKGIIK_04825at 1050.699 kb on - strand, within OKGIIK_04825at 1050.699 kb on - strand, within OKGIIK_04825at 1050.699 kb on - strand, within OKGIIK_04825at 1050.699 kb on - strand, within OKGIIK_04825at 1050.934 kb on + strandat 1050.934 kb on + strandat 1050.934 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.959 kb on + strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1050.960 kb on - strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.552 kb on + strand, within truAat 1052.068 kb on + strand, within OKGIIK_04835at 1052.069 kb on - strand, within OKGIIK_04835at 1052.069 kb on - strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.179 kb on + strand, within OKGIIK_04835at 1052.180 kb on - strand, within OKGIIK_04835at 1052.180 kb on - strand, within OKGIIK_04835at 1052.180 kb on - strand, within OKGIIK_04835at 1052.180 kb on - strand, within OKGIIK_04835at 1052.577 kb on + strandat 1052.813 kb on + strand, within OKGIIK_04840at 1052.814 kb on - strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.840 kb on + strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.841 kb on - strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.891 kb on + strand, within OKGIIK_04840at 1052.892 kb on - strand, within OKGIIK_04840at 1052.892 kb on - strand, within OKGIIK_04840at 1052.892 kb on - strand, within OKGIIK_04840at 1052.892 kb on - strand, within OKGIIK_04840

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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1,050,317 + OKGIIK_04825 0.68 -0.4
1,050,317 + OKGIIK_04825 0.68 -1.3
1,050,317 + OKGIIK_04825 0.68 -0.7
1,050,317 + OKGIIK_04825 0.68 -0.7
1,050,317 + OKGIIK_04825 0.68 +0.6
1,050,317 + OKGIIK_04825 0.68 -1.6
1,050,317 + OKGIIK_04825 0.68 -0.1
1,050,317 + OKGIIK_04825 0.68 +0.6
1,050,317 + OKGIIK_04825 0.68 -0.4
1,050,317 + OKGIIK_04825 0.68 +0.3
1,050,318 - OKGIIK_04825 0.68 -0.1
1,050,318 - OKGIIK_04825 0.68 -1.1
1,050,318 - OKGIIK_04825 0.68 +0.7
1,050,318 - OKGIIK_04825 0.68 -0.9
1,050,318 - OKGIIK_04825 0.68 -0.1
1,050,318 - OKGIIK_04825 0.68 +1.1
1,050,413 + OKGIIK_04825 0.72 -0.1
1,050,413 + OKGIIK_04825 0.72 +0.6
1,050,413 + OKGIIK_04825 0.72 +0.3
1,050,413 + OKGIIK_04825 0.72 -0.1
1,050,413 + OKGIIK_04825 0.72 -0.1
1,050,413 + OKGIIK_04825 0.72 -0.6
1,050,413 + OKGIIK_04825 0.72 +2.8
1,050,413 + OKGIIK_04825 0.72 +1.1
1,050,413 + OKGIIK_04825 0.72 -0.9
1,050,413 + OKGIIK_04825 0.72 -0.3
1,050,413 + OKGIIK_04825 0.72 -0.7
1,050,413 + OKGIIK_04825 0.72 +0.5
1,050,413 + OKGIIK_04825 0.72 +0.3
1,050,413 + OKGIIK_04825 0.72 -0.9
1,050,413 + OKGIIK_04825 0.72 -1.1
1,050,413 + OKGIIK_04825 0.72 -0.0
1,050,413 + OKGIIK_04825 0.72 +0.6
1,050,414 - OKGIIK_04825 0.72 +0.9
1,050,414 - OKGIIK_04825 0.72 -1.3
1,050,414 - OKGIIK_04825 0.72 -0.1
1,050,414 - OKGIIK_04825 0.72 +0.2
1,050,414 - OKGIIK_04825 0.72 -0.4
1,050,414 - OKGIIK_04825 0.72 -0.4
1,050,414 - OKGIIK_04825 0.72 +0.9
1,050,414 - OKGIIK_04825 0.72 -0.7
1,050,414 - OKGIIK_04825 0.72 -1.3
1,050,414 - OKGIIK_04825 0.72 -0.7
1,050,414 - OKGIIK_04825 0.72 +0.3
1,050,414 - OKGIIK_04825 0.72 +1.5
1,050,416 + OKGIIK_04825 0.72 -2.0
1,050,416 + OKGIIK_04825 0.72 -1.4
1,050,416 + OKGIIK_04825 0.72 -0.7
1,050,416 + OKGIIK_04825 0.72 +0.1
1,050,416 + OKGIIK_04825 0.72 -0.5
1,050,416 + OKGIIK_04825 0.72 -2.6
1,050,417 - OKGIIK_04825 0.73 +0.3
1,050,417 - OKGIIK_04825 0.73 +0.6
1,050,417 - OKGIIK_04825 0.73 -0.7
1,050,417 - OKGIIK_04825 0.73 -2.2
1,050,464 + OKGIIK_04825 0.74 -1.4
1,050,464 + OKGIIK_04825 0.74 -0.3
1,050,464 + OKGIIK_04825 0.74 -0.8
1,050,464 + OKGIIK_04825 0.74 -0.9
1,050,464 + OKGIIK_04825 0.74 +0.1
1,050,464 + OKGIIK_04825 0.74 -0.8
1,050,464 + OKGIIK_04825 0.74 -2.0
1,050,464 + OKGIIK_04825 0.74 +0.4
1,050,464 + OKGIIK_04825 0.74 -1.3
1,050,464 + OKGIIK_04825 0.74 +1.5
1,050,464 + OKGIIK_04825 0.74 -0.7
1,050,464 + OKGIIK_04825 0.74 -0.9
1,050,464 + OKGIIK_04825 0.74 -0.9
1,050,464 + OKGIIK_04825 0.74 -0.7
1,050,464 + OKGIIK_04825 0.74 +0.1
1,050,464 + OKGIIK_04825 0.74 -0.7
1,050,464 + OKGIIK_04825 0.74 +0.4
1,050,464 + OKGIIK_04825 0.74 +0.6
1,050,464 + OKGIIK_04825 0.74 +0.1
1,050,464 + OKGIIK_04825 0.74 +0.8
1,050,464 + OKGIIK_04825 0.74 -1.1
1,050,465 - OKGIIK_04825 0.75 +1.9
1,050,465 - OKGIIK_04825 0.75 +1.1
1,050,465 - OKGIIK_04825 0.75 -0.3
1,050,465 - OKGIIK_04825 0.75 +0.5
1,050,465 - OKGIIK_04825 0.75 +0.1
1,050,465 - OKGIIK_04825 0.75 -1.4
1,050,465 - OKGIIK_04825 0.75 +0.4
1,050,465 - OKGIIK_04825 0.75 +0.2
1,050,465 - OKGIIK_04825 0.75 -1.1
1,050,465 - OKGIIK_04825 0.75 +0.6
1,050,465 - OKGIIK_04825 0.75 -0.4
1,050,465 - OKGIIK_04825 0.75 -0.7
1,050,465 - OKGIIK_04825 0.75 +0.7
1,050,617 + OKGIIK_04825 0.81 -1.5
1,050,617 + OKGIIK_04825 0.81 -1.3
1,050,617 + OKGIIK_04825 0.81 +0.0
1,050,618 - OKGIIK_04825 0.81 -0.4
1,050,618 - OKGIIK_04825 0.81 +0.3
1,050,618 - OKGIIK_04825 0.81 +0.4
1,050,698 + OKGIIK_04825 0.84 +0.0
1,050,698 + OKGIIK_04825 0.84 -0.2
1,050,698 + OKGIIK_04825 0.84 +1.1
1,050,698 + OKGIIK_04825 0.84 +0.4
1,050,698 + OKGIIK_04825 0.84 +0.0
1,050,699 - OKGIIK_04825 0.84 -1.2
1,050,699 - OKGIIK_04825 0.84 -1.7
1,050,699 - OKGIIK_04825 0.84 -1.2
1,050,699 - OKGIIK_04825 0.84 -1.6
1,050,934 + -0.1
1,050,934 + +1.3
1,050,934 + -1.6
1,050,959 + -0.2
1,050,959 + +1.3
1,050,959 + +0.9
1,050,959 + -1.3
1,050,959 + +1.6
1,050,959 + -0.7
1,050,959 + +0.0
1,050,959 + -0.1
1,050,959 + -1.3
1,050,959 + -0.5
1,050,959 + -2.7
1,050,959 + +1.9
1,050,959 + +0.3
1,050,960 - +0.2
1,050,960 - -0.1
1,050,960 - -1.4
1,050,960 - -1.8
1,050,960 - +0.3
1,050,960 - +1.3
1,050,960 - +0.5
1,050,960 - +1.2
1,050,960 - +1.0
1,050,960 - +0.4
1,051,139 + -0.0
1,051,139 + +0.7
1,051,139 + -0.9
1,051,139 + +0.3
1,051,139 + -0.5
1,051,552 + truA OKGIIK_04830 0.48 +0.5
1,052,068 + OKGIIK_04835 0.18 +0.5
1,052,069 - OKGIIK_04835 0.18 -0.1
1,052,069 - OKGIIK_04835 0.18 -0.9
1,052,179 + OKGIIK_04835 0.36 +1.6
1,052,179 + OKGIIK_04835 0.36 -0.9
1,052,179 + OKGIIK_04835 0.36 +0.0
1,052,179 + OKGIIK_04835 0.36 +0.8
1,052,179 + OKGIIK_04835 0.36 +0.7
1,052,179 + OKGIIK_04835 0.36 +0.9
1,052,179 + OKGIIK_04835 0.36 +0.2
1,052,179 + OKGIIK_04835 0.36 -0.1
1,052,179 + OKGIIK_04835 0.36 -0.4
1,052,180 - OKGIIK_04835 0.36 -1.7
1,052,180 - OKGIIK_04835 0.36 -0.1
1,052,180 - OKGIIK_04835 0.36 -1.3
1,052,180 - OKGIIK_04835 0.36 -1.0
1,052,577 + +1.0
1,052,813 + OKGIIK_04840 0.23 -0.2
1,052,814 - OKGIIK_04840 0.23 +0.8
1,052,840 + OKGIIK_04840 0.25 +0.7
1,052,840 + OKGIIK_04840 0.25 -0.6
1,052,840 + OKGIIK_04840 0.25 -1.8
1,052,840 + OKGIIK_04840 0.25 -0.8
1,052,840 + OKGIIK_04840 0.25 -0.7
1,052,840 + OKGIIK_04840 0.25 +1.6
1,052,840 + OKGIIK_04840 0.25 +1.5
1,052,840 + OKGIIK_04840 0.25 +0.0
1,052,840 + OKGIIK_04840 0.25 -0.1
1,052,840 + OKGIIK_04840 0.25 -0.3
1,052,840 + OKGIIK_04840 0.25 +0.6
1,052,841 - OKGIIK_04840 0.25 -0.4
1,052,841 - OKGIIK_04840 0.25 -2.4
1,052,841 - OKGIIK_04840 0.25 -0.1
1,052,841 - OKGIIK_04840 0.25 +0.9
1,052,841 - OKGIIK_04840 0.25 -0.4
1,052,841 - OKGIIK_04840 0.25 -0.1
1,052,841 - OKGIIK_04840 0.25 -0.8
1,052,841 - OKGIIK_04840 0.25 -0.5
1,052,841 - OKGIIK_04840 0.25 -1.5
1,052,841 - OKGIIK_04840 0.25 -0.7
1,052,841 - OKGIIK_04840 0.25 +0.3
1,052,891 + OKGIIK_04840 0.30 +0.3
1,052,891 + OKGIIK_04840 0.30 -1.0
1,052,891 + OKGIIK_04840 0.30 -0.1
1,052,891 + OKGIIK_04840 0.30 +1.0
1,052,891 + OKGIIK_04840 0.30 +0.3
1,052,891 + OKGIIK_04840 0.30 -0.7
1,052,891 + OKGIIK_04840 0.30 +0.4
1,052,892 - OKGIIK_04840 0.31 -0.9
1,052,892 - OKGIIK_04840 0.31 +0.9
1,052,892 - OKGIIK_04840 0.31 -0.6
1,052,892 - OKGIIK_04840 0.31 +0.3

Or see this region's nucleotide sequence