Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ylaK and bcp are separated by 64 nucleotides bcp and OKGIIK_03850 are separated by 257 nucleotides OKGIIK_03850 and dapA are separated by 30 nucleotides dapA and OKGIIK_03860 are separated by 51 nucleotides
OKGIIK_03840: ylaK - phosphate starvation-inducible protein PhoH, at 846,212 to 847,594
ylaK
OKGIIK_03845: bcp - peroxiredoxin, at 847,659 to 848,120
bcp
OKGIIK_03850: OKGIIK_03850 - Glycine cleavage system transcriptional repressor, at 848,378 to 849,040
_03850
OKGIIK_03855: dapA - 4-hydroxy-tetrahydrodipicolinate synthase, at 849,071 to 849,949
dapA
OKGIIK_03860: OKGIIK_03860 - hypothetical protein, at 850,001 to 850,591
_03860
Position (kb) 848
849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 847.488 kb on - strand at 847.502 kb on - strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.572 kb on + strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.573 kb on - strand at 847.792 kb on + strand, within bcp at 847.792 kb on + strand, within bcp at 847.792 kb on + strand, within bcp at 847.792 kb on + strand, within bcp at 847.792 kb on + strand, within bcp at 847.793 kb on - strand, within bcp at 847.793 kb on - strand, within bcp at 847.851 kb on + strand, within bcp at 847.957 kb on + strand, within bcp at 847.958 kb on - strand, within bcp at 848.014 kb on + strand, within bcp at 848.015 kb on - strand, within bcp at 848.015 kb on - strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.020 kb on + strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.021 kb on - strand, within bcp at 848.296 kb on + strand at 848.296 kb on + strand at 848.296 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.529 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.634 kb on + strand, within OKGIIK_03850 at 848.635 kb on - strand, within OKGIIK_03850 at 848.635 kb on - strand, within OKGIIK_03850 at 848.676 kb on + strand, within OKGIIK_03850 at 848.798 kb on + strand, within OKGIIK_03850 at 848.799 kb on - strand, within OKGIIK_03850 at 848.878 kb on + strand, within OKGIIK_03850 at 848.878 kb on + strand, within OKGIIK_03850 at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.993 kb on + strand at 848.994 kb on - strand at 848.994 kb on - strand at 848.994 kb on - strand at 848.994 kb on - strand at 848.994 kb on - strand at 848.994 kb on - strand at 848.994 kb on - strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.008 kb on + strand at 849.009 kb on - strand at 849.009 kb on - strand at 849.009 kb on - strand at 849.009 kb on - strand at 849.009 kb on - strand at 849.009 kb on - strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.035 kb on + strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.036 kb on - strand at 849.056 kb on + strand at 849.056 kb on + strand at 849.056 kb on + strand at 849.056 kb on + strand at 849.947 kb on + strand at 849.947 kb on + strand at 849.947 kb on + strand at 849.947 kb on + strand at 849.981 kb on + strand at 849.981 kb on + strand at 849.981 kb on + strand at 849.982 kb on - strand at 849.998 kb on + strand at 849.998 kb on + strand at 849.998 kb on + strand at 849.999 kb on - strand at 849.999 kb on - strand at 849.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 847,488 - -0.8 847,502 - -0.1 847,572 + +0.4 847,572 + -0.1 847,572 + -0.8 847,572 + +1.6 847,572 + +0.3 847,572 + +0.2 847,572 + +0.2 847,572 + +1.3 847,572 + +1.1 847,572 + -1.4 847,572 + +1.2 847,572 + +0.6 847,572 + +0.0 847,572 + +0.4 847,572 + +1.4 847,572 + +0.2 847,572 + -0.1 847,572 + +0.7 847,572 + +0.4 847,572 + -0.6 847,572 + -1.3 847,572 + -0.3 847,572 + -1.0 847,572 + +0.4 847,573 - -1.0 847,573 - -0.1 847,573 - -0.4 847,573 - +0.5 847,573 - +1.9 847,573 - -0.6 847,573 - -0.7 847,573 - -1.8 847,573 - +1.1 847,573 - -0.6 847,573 - -0.1 847,573 - -0.8 847,573 - +1.7 847,573 - +0.9 847,573 - -0.4 847,573 - +0.8 847,573 - +0.9 847,792 + bcp OKGIIK_03845 0.29 +1.0 847,792 + bcp OKGIIK_03845 0.29 +1.4 847,792 + bcp OKGIIK_03845 0.29 +0.1 847,792 + bcp OKGIIK_03845 0.29 -0.6 847,792 + bcp OKGIIK_03845 0.29 +0.2 847,793 - bcp OKGIIK_03845 0.29 +0.9 847,793 - bcp OKGIIK_03845 0.29 -1.1 847,851 + bcp OKGIIK_03845 0.42 -0.4 847,957 + bcp OKGIIK_03845 0.65 +1.5 847,958 - bcp OKGIIK_03845 0.65 -0.6 848,014 + bcp OKGIIK_03845 0.77 +0.2 848,015 - bcp OKGIIK_03845 0.77 -1.4 848,015 - bcp OKGIIK_03845 0.77 +0.6 848,020 + bcp OKGIIK_03845 0.78 -0.7 848,020 + bcp OKGIIK_03845 0.78 +0.1 848,020 + bcp OKGIIK_03845 0.78 -0.1 848,020 + bcp OKGIIK_03845 0.78 +0.1 848,020 + bcp OKGIIK_03845 0.78 -0.5 848,020 + bcp OKGIIK_03845 0.78 +0.5 848,020 + bcp OKGIIK_03845 0.78 +1.2 848,020 + bcp OKGIIK_03845 0.78 +0.9 848,020 + bcp OKGIIK_03845 0.78 +0.9 848,020 + bcp OKGIIK_03845 0.78 -2.1 848,020 + bcp OKGIIK_03845 0.78 +0.4 848,020 + bcp OKGIIK_03845 0.78 -1.4 848,021 - bcp OKGIIK_03845 0.78 -1.6 848,021 - bcp OKGIIK_03845 0.78 -0.5 848,021 - bcp OKGIIK_03845 0.78 -0.9 848,021 - bcp OKGIIK_03845 0.78 -0.1 848,021 - bcp OKGIIK_03845 0.78 +0.7 848,021 - bcp OKGIIK_03845 0.78 -0.1 848,021 - bcp OKGIIK_03845 0.78 -0.7 848,021 - bcp OKGIIK_03845 0.78 -2.1 848,021 - bcp OKGIIK_03845 0.78 +1.9 848,021 - bcp OKGIIK_03845 0.78 -0.4 848,021 - bcp OKGIIK_03845 0.78 +0.0 848,021 - bcp OKGIIK_03845 0.78 +0.4 848,021 - bcp OKGIIK_03845 0.78 +0.1 848,021 - bcp OKGIIK_03845 0.78 +0.7 848,021 - bcp OKGIIK_03845 0.78 -3.0 848,296 + +2.5 848,296 + +0.3 848,296 + -0.2 848,303 + +0.0 848,303 + +0.1 848,304 - -1.2 848,304 - +0.7 848,304 - -1.1 848,304 - +0.3 848,529 + OKGIIK_03850 0.23 +1.3 848,634 + OKGIIK_03850 0.39 +0.5 848,634 + OKGIIK_03850 0.39 -0.8 848,634 + OKGIIK_03850 0.39 +1.7 848,634 + OKGIIK_03850 0.39 +0.6 848,634 + OKGIIK_03850 0.39 -0.5 848,634 + OKGIIK_03850 0.39 -1.1 848,634 + OKGIIK_03850 0.39 +0.5 848,635 - OKGIIK_03850 0.39 +0.6 848,635 - OKGIIK_03850 0.39 -0.3 848,676 + OKGIIK_03850 0.45 +0.8 848,798 + OKGIIK_03850 0.63 +0.2 848,799 - OKGIIK_03850 0.63 +0.3 848,878 + OKGIIK_03850 0.75 -0.4 848,878 + OKGIIK_03850 0.75 -1.6 848,993 + -1.2 848,993 + +0.4 848,993 + -1.1 848,993 + +0.6 848,993 + +0.9 848,993 + -0.9 848,993 + +0.2 848,993 + +0.1 848,994 - +1.0 848,994 - +0.6 848,994 - -1.2 848,994 - -0.6 848,994 - +1.5 848,994 - +1.7 848,994 - -0.5 849,008 + +0.7 849,008 + -0.5 849,008 + +1.7 849,008 + -0.3 849,008 + -1.1 849,008 + -0.4 849,008 + +0.6 849,008 + -0.9 849,009 - -2.3 849,009 - -1.4 849,009 - +0.5 849,009 - +0.5 849,009 - +0.1 849,009 - -0.1 849,035 + +0.3 849,035 + -0.2 849,035 + +0.3 849,035 + -0.0 849,035 + +0.6 849,035 + +0.3 849,035 + +1.4 849,035 + -0.9 849,035 + -0.5 849,036 - +0.4 849,036 - -0.8 849,036 - -0.8 849,036 - -3.2 849,036 - -0.1 849,036 - +0.0 849,036 - -0.9 849,036 - -1.3 849,036 - -0.1 849,036 - -1.9 849,036 - -0.7 849,036 - -1.4 849,036 - -1.1 849,056 + +0.3 849,056 + -0.7 849,056 + +1.1 849,056 + +1.5 849,947 + -1.1 849,947 + +0.6 849,947 + +0.5 849,947 + +0.7 849,981 + -0.7 849,981 + +0.3 849,981 + +0.7 849,982 - +0.3 849,998 + -0.2 849,998 + +0.1 849,998 + -0.4 849,999 - +1.5 849,999 - -0.7 849,999 - -0.1
Or see this region's nucleotide sequence