Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapD and OKGIIK_03125 are separated by 27 nucleotides OKGIIK_03125 and OKGIIK_03130 overlap by 4 nucleotides OKGIIK_03130 and dapE are separated by 10 nucleotides
OKGIIK_03120: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 707,805 to 708,632
dapD
OKGIIK_03125: OKGIIK_03125 - hypothetical protein, at 708,660 to 709,127
_03125
OKGIIK_03130: OKGIIK_03130 - Arsenate reductase, at 709,124 to 709,480
_03130
OKGIIK_03135: dapE - succinyl-diaminopimelate desuccinylase, at 709,491 to 710,693
dapE
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.755 kb on - strand at 707.755 kb on - strand at 707.755 kb on - strand at 707.755 kb on - strand at 708.664 kb on - strand at 708.675 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.704 kb on - strand at 708.841 kb on + strand, within OKGIIK_03125 at 708.841 kb on + strand, within OKGIIK_03125 at 708.841 kb on + strand, within OKGIIK_03125 at 708.842 kb on - strand, within OKGIIK_03125 at 708.842 kb on - strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.879 kb on + strand, within OKGIIK_03125 at 708.880 kb on - strand, within OKGIIK_03125 at 709.024 kb on + strand, within OKGIIK_03125 at 709.024 kb on + strand, within OKGIIK_03125 at 709.024 kb on + strand, within OKGIIK_03125 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.202 kb on + strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130 at 709.203 kb on - strand, within OKGIIK_03130
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 707,755 - +0.6 707,755 - +1.0 707,755 - -2.3 707,755 - -2.4 708,664 - +0.8 708,675 + -1.6 708,703 + -1.0 708,703 + -0.2 708,703 + -1.0 708,703 + -1.2 708,703 + -0.5 708,703 + +0.8 708,704 - +0.1 708,704 - -0.0 708,841 + OKGIIK_03125 0.39 +1.8 708,841 + OKGIIK_03125 0.39 -0.3 708,841 + OKGIIK_03125 0.39 +1.4 708,842 - OKGIIK_03125 0.39 -1.1 708,842 - OKGIIK_03125 0.39 +0.6 708,879 + OKGIIK_03125 0.47 +1.5 708,879 + OKGIIK_03125 0.47 -0.5 708,879 + OKGIIK_03125 0.47 -0.3 708,879 + OKGIIK_03125 0.47 -0.2 708,879 + OKGIIK_03125 0.47 -0.2 708,879 + OKGIIK_03125 0.47 -1.2 708,879 + OKGIIK_03125 0.47 +1.4 708,879 + OKGIIK_03125 0.47 +0.2 708,879 + OKGIIK_03125 0.47 -0.8 708,879 + OKGIIK_03125 0.47 +0.2 708,879 + OKGIIK_03125 0.47 +0.0 708,880 - OKGIIK_03125 0.47 -0.2 709,024 + OKGIIK_03125 0.78 -2.3 709,024 + OKGIIK_03125 0.78 -0.5 709,024 + OKGIIK_03125 0.78 +0.6 709,202 + OKGIIK_03130 0.22 +0.5 709,202 + OKGIIK_03130 0.22 -0.2 709,202 + OKGIIK_03130 0.22 +0.6 709,202 + OKGIIK_03130 0.22 -0.2 709,202 + OKGIIK_03130 0.22 +0.0 709,202 + OKGIIK_03130 0.22 -0.9 709,202 + OKGIIK_03130 0.22 -0.5 709,203 - OKGIIK_03130 0.22 -0.5 709,203 - OKGIIK_03130 0.22 -0.4 709,203 - OKGIIK_03130 0.22 +0.8 709,203 - OKGIIK_03130 0.22 +0.7 709,203 - OKGIIK_03130 0.22 -0.3 709,203 - OKGIIK_03130 0.22 -1.1
Or see this region's nucleotide sequence