Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01640

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01630 and OKGIIK_01635 overlap by 4 nucleotidesOKGIIK_01635 and OKGIIK_01640 overlap by 8 nucleotidesOKGIIK_01640 and OKGIIK_01645 overlap by 4 nucleotidesOKGIIK_01645 and OKGIIK_01650 are separated by 63 nucleotides OKGIIK_01630: OKGIIK_01630 - D-amino-acid oxidase, at 368,713 to 369,825 _01630 OKGIIK_01635: OKGIIK_01635 - (2Fe-2S)-binding protein, at 369,822 to 370,067 _01635 OKGIIK_01640: OKGIIK_01640 - Oxidoreductase, at 370,060 to 371,370 _01640 OKGIIK_01645: OKGIIK_01645 - Dihydrodipicolinate synthase family protein, at 371,367 to 372,272 _01645 OKGIIK_01650: OKGIIK_01650 - Ketoglutarate semialdehyde dehydrogenase, at 372,336 to 373,934 _01650 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1 2at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.143 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.787 kb on + strandat 369.788 kb on - strandat 370.082 kb on - strandat 370.082 kb on - strandat 370.357 kb on + strand, within OKGIIK_01640at 370.357 kb on + strand, within OKGIIK_01640at 370.358 kb on - strand, within OKGIIK_01640at 370.370 kb on + strand, within OKGIIK_01640at 370.371 kb on - strand, within OKGIIK_01640at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.797 kb on - strand, within OKGIIK_01645at 371.797 kb on - strand, within OKGIIK_01645at 372.013 kb on - strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.328 kb on + strandat 372.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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369,073 + OKGIIK_01630 0.32 -0.8
369,073 + OKGIIK_01630 0.32 +0.6
369,073 + OKGIIK_01630 0.32 -0.6
369,073 + OKGIIK_01630 0.32 -0.5
369,073 + OKGIIK_01630 0.32 +0.5
369,073 + OKGIIK_01630 0.32 -0.1
369,074 - OKGIIK_01630 0.32 -2.2
369,074 - OKGIIK_01630 0.32 +0.2
369,142 + OKGIIK_01630 0.39 +1.6
369,142 + OKGIIK_01630 0.39 +1.8
369,143 - OKGIIK_01630 0.39 -2.1
369,332 - OKGIIK_01630 0.56 +0.1
369,332 - OKGIIK_01630 0.56 -2.1
369,407 - OKGIIK_01630 0.62 -0.1
369,407 - OKGIIK_01630 0.62 +0.8
369,407 - OKGIIK_01630 0.62 -0.5
369,558 + OKGIIK_01630 0.76 +0.2
369,558 + OKGIIK_01630 0.76 +0.7
369,558 + OKGIIK_01630 0.76 +0.1
369,558 + OKGIIK_01630 0.76 -0.2
369,558 + OKGIIK_01630 0.76 -0.3
369,558 + OKGIIK_01630 0.76 +0.1
369,558 + OKGIIK_01630 0.76 +0.2
369,558 + OKGIIK_01630 0.76 +1.6
369,558 + OKGIIK_01630 0.76 -0.9
369,558 + OKGIIK_01630 0.76 -1.3
369,558 + OKGIIK_01630 0.76 +1.4
369,559 - OKGIIK_01630 0.76 -0.8
369,559 - OKGIIK_01630 0.76 +0.6
369,559 - OKGIIK_01630 0.76 -2.3
369,559 - OKGIIK_01630 0.76 -0.5
369,559 - OKGIIK_01630 0.76 -0.3
369,559 - OKGIIK_01630 0.76 -1.5
369,559 - OKGIIK_01630 0.76 -0.2
369,559 - OKGIIK_01630 0.76 -1.5
369,559 - OKGIIK_01630 0.76 +0.9
369,646 + OKGIIK_01630 0.84 -1.0
369,646 + OKGIIK_01630 0.84 -0.4
369,646 + OKGIIK_01630 0.84 -0.2
369,647 - OKGIIK_01630 0.84 +0.8
369,647 - OKGIIK_01630 0.84 -0.7
369,647 - OKGIIK_01630 0.84 -1.5
369,647 - OKGIIK_01630 0.84 +0.5
369,647 - OKGIIK_01630 0.84 +1.5
369,647 - OKGIIK_01630 0.84 -0.8
369,647 - OKGIIK_01630 0.84 +0.8
369,647 - OKGIIK_01630 0.84 -0.4
369,787 + +0.7
369,788 - -1.1
370,082 - +0.6
370,082 - -1.2
370,357 + OKGIIK_01640 0.23 +0.5
370,357 + OKGIIK_01640 0.23 -0.5
370,358 - OKGIIK_01640 0.23 -1.1
370,370 + OKGIIK_01640 0.24 +0.6
370,371 - OKGIIK_01640 0.24 -1.1
371,697 + OKGIIK_01645 0.36 +0.4
371,697 + OKGIIK_01645 0.36 -1.0
371,697 + OKGIIK_01645 0.36 -1.2
371,697 + OKGIIK_01645 0.36 -1.5
371,697 + OKGIIK_01645 0.36 +0.9
371,697 + OKGIIK_01645 0.36 -0.1
371,697 + OKGIIK_01645 0.36 +0.8
371,697 + OKGIIK_01645 0.36 -0.4
371,697 + OKGIIK_01645 0.36 -1.2
371,698 - OKGIIK_01645 0.37 -0.5
371,698 - OKGIIK_01645 0.37 +1.0
371,698 - OKGIIK_01645 0.37 -0.5
371,698 - OKGIIK_01645 0.37 +0.0
371,698 - OKGIIK_01645 0.37 +0.4
371,698 - OKGIIK_01645 0.37 -0.5
371,698 - OKGIIK_01645 0.37 +0.8
371,698 - OKGIIK_01645 0.37 -0.5
371,703 + OKGIIK_01645 0.37 -0.5
371,703 + OKGIIK_01645 0.37 +0.4
371,703 + OKGIIK_01645 0.37 -1.2
371,703 + OKGIIK_01645 0.37 +0.0
371,703 + OKGIIK_01645 0.37 +0.8
371,704 - OKGIIK_01645 0.37 -0.2
371,704 - OKGIIK_01645 0.37 -0.2
371,704 - OKGIIK_01645 0.37 -1.3
371,704 - OKGIIK_01645 0.37 -0.5
371,778 + OKGIIK_01645 0.45 -0.3
371,778 + OKGIIK_01645 0.45 +0.4
371,778 + OKGIIK_01645 0.45 -0.8
371,778 + OKGIIK_01645 0.45 -1.2
371,778 + OKGIIK_01645 0.45 +0.8
371,778 + OKGIIK_01645 0.45 +0.1
371,778 + OKGIIK_01645 0.45 -1.4
371,778 + OKGIIK_01645 0.45 -0.6
371,778 + OKGIIK_01645 0.45 -1.0
371,778 + OKGIIK_01645 0.45 -0.8
371,778 + OKGIIK_01645 0.45 +1.1
371,778 + OKGIIK_01645 0.45 +0.3
371,778 + OKGIIK_01645 0.45 -1.6
371,779 - OKGIIK_01645 0.45 -0.4
371,779 - OKGIIK_01645 0.45 -0.3
371,779 - OKGIIK_01645 0.45 -0.3
371,779 - OKGIIK_01645 0.45 +0.2
371,779 - OKGIIK_01645 0.45 -0.5
371,779 - OKGIIK_01645 0.45 +1.2
371,779 - OKGIIK_01645 0.45 +0.8
371,797 - OKGIIK_01645 0.47 -0.1
371,797 - OKGIIK_01645 0.47 -1.6
372,013 - OKGIIK_01645 0.71 +0.7
372,081 + OKGIIK_01645 0.79 -0.5
372,081 + OKGIIK_01645 0.79 -0.2
372,081 + OKGIIK_01645 0.79 -1.6
372,081 + OKGIIK_01645 0.79 +0.2
372,081 + OKGIIK_01645 0.79 +0.1
372,081 + OKGIIK_01645 0.79 -1.9
372,081 + OKGIIK_01645 0.79 -1.5
372,082 - OKGIIK_01645 0.79 +1.1
372,082 - OKGIIK_01645 0.79 -1.0
372,082 - OKGIIK_01645 0.79 +1.5
372,082 - OKGIIK_01645 0.79 -1.2
372,082 - OKGIIK_01645 0.79 -0.5
372,082 - OKGIIK_01645 0.79 +1.1
372,082 - OKGIIK_01645 0.79 -1.4
372,082 - OKGIIK_01645 0.79 -0.8
372,082 - OKGIIK_01645 0.79 -0.1
372,328 + -1.5
372,328 + +1.8

Or see this region's nucleotide sequence