Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06844

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06843 and MPMX19_06844 are separated by 251 nucleotidesMPMX19_06844 and MPMX19_06845 are separated by 13 nucleotides MPMX19_06843: MPMX19_06843 - hypothetical protein, at 109,766 to 110,500 _06843 MPMX19_06844: MPMX19_06844 - Putrescine--pyruvate aminotransferase, at 110,752 to 112,128 _06844 MPMX19_06845: MPMX19_06845 - hypothetical protein, at 112,142 to 113,011 _06845 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 109.884 kb on + strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.959 kb on + strand, within MPMX19_06843at 110.163 kb on + strand, within MPMX19_06843at 110.164 kb on - strand, within MPMX19_06843at 110.248 kb on - strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.472 kb on + strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.864 kb on + strandat 110.864 kb on + strandat 111.113 kb on + strand, within MPMX19_06844at 111.113 kb on + strand, within MPMX19_06844at 111.114 kb on - strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.213 kb on + strand, within MPMX19_06844at 111.214 kb on - strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.684 kb on - strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.741 kb on - strand, within MPMX19_06844at 111.743 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.879 kb on - strand, within MPMX19_06844at 111.944 kb on + strand, within MPMX19_06844at 112.067 kb on + strandat 112.806 kb on + strand, within MPMX19_06845at 112.807 kb on - strand, within MPMX19_06845at 112.999 kb on + strandat 112.999 kb on + strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.128 kb on - strandat 113.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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109,884 + MPMX19_06843 0.16 -1.1
109,885 - MPMX19_06843 0.16 +0.3
109,885 - MPMX19_06843 0.16 +1.4
109,885 - MPMX19_06843 0.16 -0.6
109,959 + MPMX19_06843 0.26 +1.6
110,163 + MPMX19_06843 0.54 -0.3
110,164 - MPMX19_06843 0.54 -1.0
110,248 - MPMX19_06843 0.66 +0.4
110,292 + MPMX19_06843 0.72 -2.5
110,292 + MPMX19_06843 0.72 -1.0
110,337 + MPMX19_06843 0.78 -0.6
110,337 + MPMX19_06843 0.78 +0.4
110,337 + MPMX19_06843 0.78 -0.2
110,472 + -3.0
110,473 - -0.0
110,473 - +0.0
110,473 - +0.1
110,473 - -0.4
110,864 + -1.8
110,864 + +0.1
111,113 + MPMX19_06844 0.26 +0.1
111,113 + MPMX19_06844 0.26 -1.7
111,114 - MPMX19_06844 0.26 -0.2
111,164 + MPMX19_06844 0.30 -0.4
111,164 + MPMX19_06844 0.30 -1.0
111,164 + MPMX19_06844 0.30 -0.3
111,164 + MPMX19_06844 0.30 +0.2
111,165 - MPMX19_06844 0.30 -0.4
111,165 - MPMX19_06844 0.30 -1.2
111,165 - MPMX19_06844 0.30 -1.5
111,165 - MPMX19_06844 0.30 -1.2
111,170 + MPMX19_06844 0.30 -0.2
111,170 + MPMX19_06844 0.30 -1.0
111,170 + MPMX19_06844 0.30 -1.4
111,170 + MPMX19_06844 0.30 -1.2
111,171 - MPMX19_06844 0.30 -0.4
111,171 - MPMX19_06844 0.30 +1.2
111,171 - MPMX19_06844 0.30 -1.1
111,171 - MPMX19_06844 0.30 -0.9
111,213 + MPMX19_06844 0.33 -2.2
111,214 - MPMX19_06844 0.34 +1.6
111,218 + MPMX19_06844 0.34 -1.5
111,218 + MPMX19_06844 0.34 -0.6
111,218 + MPMX19_06844 0.34 -1.0
111,218 + MPMX19_06844 0.34 -2.2
111,218 + MPMX19_06844 0.34 +0.2
111,218 + MPMX19_06844 0.34 -0.3
111,218 + MPMX19_06844 0.34 +0.1
111,219 - MPMX19_06844 0.34 -0.6
111,219 - MPMX19_06844 0.34 -2.5
111,219 - MPMX19_06844 0.34 -0.7
111,219 - MPMX19_06844 0.34 -2.8
111,219 - MPMX19_06844 0.34 -1.0
111,219 - MPMX19_06844 0.34 -1.8
111,257 + MPMX19_06844 0.37 -0.2
111,257 + MPMX19_06844 0.37 -1.9
111,258 - MPMX19_06844 0.37 -1.4
111,258 - MPMX19_06844 0.37 -1.9
111,467 + MPMX19_06844 0.52 -0.2
111,467 + MPMX19_06844 0.52 -0.6
111,467 + MPMX19_06844 0.52 -0.4
111,467 + MPMX19_06844 0.52 +1.2
111,467 + MPMX19_06844 0.52 -2.4
111,468 - MPMX19_06844 0.52 -0.0
111,468 - MPMX19_06844 0.52 -0.0
111,468 - MPMX19_06844 0.52 -0.8
111,468 - MPMX19_06844 0.52 -0.2
111,468 - MPMX19_06844 0.52 -0.4
111,468 - MPMX19_06844 0.52 -0.5
111,468 - MPMX19_06844 0.52 -0.8
111,581 + MPMX19_06844 0.60 +0.2
111,581 + MPMX19_06844 0.60 -1.0
111,582 - MPMX19_06844 0.60 +1.0
111,582 - MPMX19_06844 0.60 +0.8
111,684 - MPMX19_06844 0.68 +0.8
111,740 + MPMX19_06844 0.72 -0.6
111,740 + MPMX19_06844 0.72 -0.4
111,741 - MPMX19_06844 0.72 -0.3
111,743 + MPMX19_06844 0.72 +0.8
111,797 + MPMX19_06844 0.76 -1.2
111,797 + MPMX19_06844 0.76 +1.6
111,797 + MPMX19_06844 0.76 -0.4
111,797 + MPMX19_06844 0.76 -1.5
111,798 - MPMX19_06844 0.76 -0.2
111,798 - MPMX19_06844 0.76 -2.0
111,798 - MPMX19_06844 0.76 -1.4
111,798 - MPMX19_06844 0.76 -1.3
111,798 - MPMX19_06844 0.76 -0.9
111,798 - MPMX19_06844 0.76 -0.8
111,798 - MPMX19_06844 0.76 -1.7
111,798 - MPMX19_06844 0.76 -1.3
111,798 - MPMX19_06844 0.76 -0.5
111,798 - MPMX19_06844 0.76 -1.1
111,879 - MPMX19_06844 0.82 -0.9
111,944 + MPMX19_06844 0.87 +2.9
112,067 + -1.3
112,806 + MPMX19_06845 0.76 +1.6
112,807 - MPMX19_06845 0.76 -1.2
112,999 + -1.6
112,999 + -1.1
113,000 - +0.8
113,000 - -0.2
113,000 - -0.2
113,000 - -0.2
113,127 + -0.2
113,127 + +1.3
113,127 + -0.4
113,128 - -1.4
113,128 - -0.0

Or see this region's nucleotide sequence