Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06327

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06326 and MPMX19_06327 are separated by 68 nucleotidesMPMX19_06327 and MPMX19_06328 are separated by 71 nucleotides MPMX19_06326: MPMX19_06326 - hypothetical protein, at 92,148 to 92,888 _06326 MPMX19_06327: MPMX19_06327 - hypothetical protein, at 92,957 to 93,277 _06327 MPMX19_06328: MPMX19_06328 - hypothetical protein, at 93,349 to 94,791 _06328 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.961 kb on + strandat 91.962 kb on - strandat 91.962 kb on - strandat 91.969 kb on + strandat 91.970 kb on - strandat 91.970 kb on - strandat 91.970 kb on - strandat 91.971 kb on + strandat 92.059 kb on + strandat 92.060 kb on - strandat 92.060 kb on - strandat 92.060 kb on - strandat 92.060 kb on - strandat 92.095 kb on - strandat 92.115 kb on + strandat 92.115 kb on + strandat 92.193 kb on + strandat 92.193 kb on + strandat 92.193 kb on + strandat 92.193 kb on + strandat 92.194 kb on - strandat 92.194 kb on - strandat 92.194 kb on - strandat 92.194 kb on - strandat 92.194 kb on - strandat 92.194 kb on - strandat 92.200 kb on + strandat 92.200 kb on + strandat 92.201 kb on - strandat 92.201 kb on - strandat 92.243 kb on + strand, within MPMX19_06326at 92.243 kb on + strand, within MPMX19_06326at 92.243 kb on + strand, within MPMX19_06326at 92.244 kb on - strand, within MPMX19_06326at 92.244 kb on - strand, within MPMX19_06326at 92.244 kb on - strand, within MPMX19_06326at 92.244 kb on - strand, within MPMX19_06326at 92.358 kb on + strand, within MPMX19_06326at 92.359 kb on - strand, within MPMX19_06326at 92.359 kb on - strand, within MPMX19_06326at 92.359 kb on - strand, within MPMX19_06326at 92.780 kb on + strand, within MPMX19_06326at 92.919 kb on + strandat 92.957 kb on - strandat 92.986 kb on + strandat 93.125 kb on + strand, within MPMX19_06327at 93.126 kb on - strand, within MPMX19_06327at 93.126 kb on - strand, within MPMX19_06327at 93.126 kb on - strand, within MPMX19_06327at 93.328 kb on + strandat 93.328 kb on + strandat 93.328 kb on + strandat 93.328 kb on + strandat 93.329 kb on - strandat 93.329 kb on - strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.350 kb on + strandat 93.351 kb on - strandat 93.351 kb on - strandat 93.351 kb on - strandat 93.351 kb on - strandat 93.358 kb on - strandat 93.358 kb on - strandat 93.358 kb on - strandat 93.369 kb on + strandat 93.369 kb on + strandat 93.369 kb on + strandat 93.369 kb on + strandat 93.369 kb on + strandat 93.369 kb on + strandat 93.370 kb on - strandat 93.370 kb on - strandat 93.370 kb on - strandat 93.896 kb on + strand, within MPMX19_06328at 93.896 kb on + strand, within MPMX19_06328at 93.896 kb on + strand, within MPMX19_06328at 93.897 kb on - strand, within MPMX19_06328at 93.897 kb on - strand, within MPMX19_06328at 93.897 kb on - strand, within MPMX19_06328at 93.897 kb on - strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.199 kb on + strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328at 94.200 kb on - strand, within MPMX19_06328

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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91,961 + -0.2
91,962 - -0.4
91,962 - -0.7
91,969 + -0.3
91,970 - -0.5
91,970 - -0.4
91,970 - +0.2
91,971 + -0.1
92,059 + -0.3
92,060 - +0.9
92,060 - -1.0
92,060 - +0.3
92,060 - -0.5
92,095 - -1.7
92,115 + -0.5
92,115 + -1.0
92,193 + -0.1
92,193 + -0.5
92,193 + -2.3
92,193 + -0.5
92,194 - -0.1
92,194 - +0.9
92,194 - +0.0
92,194 - +0.9
92,194 - -0.8
92,194 - +0.4
92,200 + +0.3
92,200 + -0.7
92,201 - +0.0
92,201 - +0.7
92,243 + MPMX19_06326 0.13 +0.4
92,243 + MPMX19_06326 0.13 -0.5
92,243 + MPMX19_06326 0.13 +0.2
92,244 - MPMX19_06326 0.13 +0.9
92,244 - MPMX19_06326 0.13 -1.6
92,244 - MPMX19_06326 0.13 +0.7
92,244 - MPMX19_06326 0.13 -0.1
92,358 + MPMX19_06326 0.28 -1.4
92,359 - MPMX19_06326 0.28 +0.2
92,359 - MPMX19_06326 0.28 +0.5
92,359 - MPMX19_06326 0.28 +0.2
92,780 + MPMX19_06326 0.85 -1.0
92,919 + -2.0
92,957 - -0.2
92,986 + -0.5
93,125 + MPMX19_06327 0.52 -0.8
93,126 - MPMX19_06327 0.53 +0.5
93,126 - MPMX19_06327 0.53 -0.7
93,126 - MPMX19_06327 0.53 -1.6
93,328 + -1.1
93,328 + -0.2
93,328 + -1.0
93,328 + -1.3
93,329 - -2.0
93,329 - -0.8
93,350 + -0.2
93,350 + -1.3
93,350 + -0.9
93,350 + +0.0
93,350 + -2.7
93,350 + -0.8
93,350 + -0.3
93,351 - -0.9
93,351 - -0.7
93,351 - +0.9
93,351 - -1.2
93,358 - -0.3
93,358 - -0.1
93,358 - -0.2
93,369 + -0.1
93,369 + -0.3
93,369 + -0.8
93,369 + +0.5
93,369 + -0.1
93,369 + -1.2
93,370 - -0.5
93,370 - -0.8
93,370 - -0.3
93,896 + MPMX19_06328 0.38 +0.5
93,896 + MPMX19_06328 0.38 +1.9
93,896 + MPMX19_06328 0.38 +1.5
93,897 - MPMX19_06328 0.38 -1.9
93,897 - MPMX19_06328 0.38 -0.7
93,897 - MPMX19_06328 0.38 -0.1
93,897 - MPMX19_06328 0.38 -2.0
94,199 + MPMX19_06328 0.59 +2.5
94,199 + MPMX19_06328 0.59 -1.1
94,199 + MPMX19_06328 0.59 -0.8
94,199 + MPMX19_06328 0.59 -1.5
94,199 + MPMX19_06328 0.59 -2.1
94,199 + MPMX19_06328 0.59 +0.9
94,199 + MPMX19_06328 0.59 -1.3
94,199 + MPMX19_06328 0.59 -1.2
94,199 + MPMX19_06328 0.59 -0.2
94,200 - MPMX19_06328 0.59 +0.0
94,200 - MPMX19_06328 0.59 -1.2
94,200 - MPMX19_06328 0.59 -0.8
94,200 - MPMX19_06328 0.59 -2.1
94,200 - MPMX19_06328 0.59 +0.0
94,200 - MPMX19_06328 0.59 +1.8

Or see this region's nucleotide sequence