Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06166 and MPMX19_06167 overlap by 4 nucleotides MPMX19_06167 and MPMX19_06168 are separated by 609 nucleotides MPMX19_06168 and MPMX19_06169 are separated by 36 nucleotides
MPMX19_06166: MPMX19_06166 - putative acyl-CoA dehydrogenase fadE25, at 353,404 to 354,621
_06166
MPMX19_06167: MPMX19_06167 - hypothetical protein, at 354,618 to 354,968
_06167
MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229
_06168
MPMX19_06169: MPMX19_06169 - hypothetical protein, at 358,266 to 358,820
_06169
Position (kb) 355
356
357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.781 kb on + strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.943 kb on + strand at 354.944 kb on - strand at 355.006 kb on + strand at 355.006 kb on + strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.089 kb on - strand at 355.100 kb on + strand at 355.100 kb on + strand at 355.101 kb on - strand at 355.142 kb on - strand at 355.142 kb on - strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.326 kb on - strand at 355.326 kb on - strand at 355.629 kb on - strand at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.245 kb on - strand, within MPMX19_06168 at 356.245 kb on - strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.716 kb on - strand, within MPMX19_06168 at 356.716 kb on - strand, within MPMX19_06168 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.971 kb on + strand at 358.971 kb on + strand at 358.992 kb on + strand at 358.992 kb on + strand at 358.993 kb on - strand at 358.993 kb on - strand at 359.002 kb on + strand at 359.208 kb on + strand at 359.208 kb on + strand at 359.209 kb on - strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 354,781 + MPMX19_06167 0.46 +0.4 354,782 - MPMX19_06167 0.47 -0.6 354,782 - MPMX19_06167 0.47 -0.7 354,782 - MPMX19_06167 0.47 -0.6 354,943 + -0.8 354,944 - -1.0 355,006 + -1.1 355,006 + +0.4 355,007 - +1.1 355,007 - -1.6 355,007 - -1.1 355,007 - +0.3 355,089 - -0.1 355,100 + -0.9 355,100 + -0.1 355,101 - -0.6 355,142 - -0.7 355,142 - -1.3 355,162 + -1.3 355,162 + -1.9 355,162 + +0.4 355,162 + -0.6 355,162 + -0.1 355,163 - -1.0 355,163 - -1.4 355,163 - -1.3 355,163 - -0.9 355,163 - -1.5 355,163 - -0.1 355,326 - -0.3 355,326 - -0.1 355,629 - -1.5 356,103 + MPMX19_06168 0.20 +0.1 356,103 + MPMX19_06168 0.20 -0.1 356,103 + MPMX19_06168 0.20 +0.1 356,103 + MPMX19_06168 0.20 -1.1 356,103 + MPMX19_06168 0.20 -0.4 356,103 + MPMX19_06168 0.20 -1.4 356,103 + MPMX19_06168 0.20 -0.4 356,103 + MPMX19_06168 0.20 +0.6 356,103 + MPMX19_06168 0.20 -0.1 356,103 + MPMX19_06168 0.20 -2.0 356,103 + MPMX19_06168 0.20 +1.4 356,103 + MPMX19_06168 0.20 +0.6 356,103 + MPMX19_06168 0.20 -2.2 356,103 + MPMX19_06168 0.20 -0.3 356,103 + MPMX19_06168 0.20 -0.0 356,104 - MPMX19_06168 0.20 -0.1 356,104 - MPMX19_06168 0.20 -0.6 356,104 - MPMX19_06168 0.20 -0.7 356,104 - MPMX19_06168 0.20 +0.3 356,104 - MPMX19_06168 0.20 -1.5 356,104 - MPMX19_06168 0.20 +0.9 356,104 - MPMX19_06168 0.20 -0.6 356,104 - MPMX19_06168 0.20 -1.1 356,104 - MPMX19_06168 0.20 -0.1 356,104 - MPMX19_06168 0.20 -0.8 356,104 - MPMX19_06168 0.20 -1.6 356,104 - MPMX19_06168 0.20 -1.1 356,244 + MPMX19_06168 0.25 -1.4 356,244 + MPMX19_06168 0.25 +1.7 356,244 + MPMX19_06168 0.25 -1.1 356,244 + MPMX19_06168 0.25 -0.9 356,244 + MPMX19_06168 0.25 -0.7 356,244 + MPMX19_06168 0.25 -1.5 356,244 + MPMX19_06168 0.25 -0.6 356,244 + MPMX19_06168 0.25 -0.2 356,245 - MPMX19_06168 0.25 -1.5 356,245 - MPMX19_06168 0.25 +0.7 356,340 + MPMX19_06168 0.29 -1.3 356,340 + MPMX19_06168 0.29 -0.9 356,340 + MPMX19_06168 0.29 -1.5 356,341 - MPMX19_06168 0.29 -1.3 356,341 - MPMX19_06168 0.29 -1.0 356,341 - MPMX19_06168 0.29 -1.6 356,341 - MPMX19_06168 0.29 -2.0 356,341 - MPMX19_06168 0.29 -0.1 356,715 + MPMX19_06168 0.43 -0.0 356,715 + MPMX19_06168 0.43 +1.1 356,715 + MPMX19_06168 0.43 -0.8 356,716 - MPMX19_06168 0.43 -0.3 356,716 - MPMX19_06168 0.43 -2.6 358,357 + MPMX19_06169 0.16 -1.5 358,357 + MPMX19_06169 0.16 -0.4 358,357 + MPMX19_06169 0.16 -1.0 358,357 + MPMX19_06169 0.16 -1.1 358,357 + MPMX19_06169 0.16 -0.6 358,357 + MPMX19_06169 0.16 -0.8 358,357 + MPMX19_06169 0.16 +0.4 358,357 + MPMX19_06169 0.16 -0.1 358,357 + MPMX19_06169 0.16 -0.7 358,358 - MPMX19_06169 0.17 -1.5 358,358 - MPMX19_06169 0.17 -0.7 358,358 - MPMX19_06169 0.17 -0.6 358,358 - MPMX19_06169 0.17 -2.3 358,358 - MPMX19_06169 0.17 -1.5 358,358 - MPMX19_06169 0.17 -0.3 358,358 - MPMX19_06169 0.17 -0.6 358,358 - MPMX19_06169 0.17 +0.1 358,358 - MPMX19_06169 0.17 -2.5 358,358 - MPMX19_06169 0.17 -1.6 358,358 - MPMX19_06169 0.17 +1.0 358,588 + MPMX19_06169 0.58 +0.2 358,588 + MPMX19_06169 0.58 -1.6 358,622 - MPMX19_06169 0.64 -1.9 358,622 - MPMX19_06169 0.64 -0.7 358,840 + -0.9 358,840 + +1.4 358,840 + +0.1 358,840 + -2.0 358,840 + -1.9 358,840 + -2.7 358,840 + -0.4 358,840 + -0.5 358,840 + +1.1 358,840 + -0.1 358,841 - -0.4 358,841 - -0.1 358,841 - +0.2 358,841 - -0.5 358,841 - -0.8 358,841 - -1.3 358,841 - -1.0 358,841 - -1.1 358,841 - -0.4 358,841 - -1.4 358,866 + -0.7 358,866 + +0.2 358,866 + -3.0 358,866 + -1.0 358,866 + -0.3 358,866 + -0.4 358,866 + -1.9 358,866 + -1.5 358,866 + -0.3 358,866 + -0.6 358,867 - -1.3 358,867 - -1.3 358,867 - +0.1 358,867 - -0.1 358,867 - -0.6 358,867 - +0.9 358,867 - -1.3 358,867 - -0.9 358,867 - +0.4 358,867 - -1.9 358,867 - +0.1 358,867 - -0.1 358,867 - -1.1 358,966 + +0.3 358,966 + -0.3 358,966 + +0.8 358,966 + -1.0 358,966 + -2.8 358,966 + -0.1 358,967 - -0.1 358,967 - -1.6 358,967 - -0.9 358,967 - -0.9 358,967 - -0.7 358,971 + -1.5 358,971 + -0.4 358,992 + +0.3 358,992 + -0.5 358,993 - -1.4 358,993 - -0.4 359,002 + -1.7 359,208 + -1.1 359,208 + -1.6 359,209 - -0.0 359,217 + -0.1 359,217 + -1.0 359,217 + +1.8 359,217 + -0.7 359,217 + -1.8 359,218 - +0.0 359,218 - -1.7 359,218 - -1.4 359,218 - -0.3 359,218 - +1.2
Or see this region's nucleotide sequence