Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06004

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06003 and MPMX19_06004 overlap by 4 nucleotidesMPMX19_06004 and MPMX19_06005 are separated by 3 nucleotidesMPMX19_06005 and MPMX19_06006 are separated by 1 nucleotides MPMX19_06003: MPMX19_06003 - hypothetical protein, at 157,471 to 158,961 _06003 MPMX19_06004: MPMX19_06004 - Lipopolysaccharide export system ATP-binding protein LptB, at 158,958 to 159,866 _06004 MPMX19_06005: MPMX19_06005 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 159,870 to 160,580 _06005 MPMX19_06006: MPMX19_06006 - hypothetical protein, at 160,582 to 160,935 _06006 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 159.150 kb on + strand, within MPMX19_06004at 159.150 kb on + strand, within MPMX19_06004at 159.150 kb on + strand, within MPMX19_06004at 159.150 kb on + strand, within MPMX19_06004at 159.150 kb on + strand, within MPMX19_06004at 159.150 kb on + strand, within MPMX19_06004at 159.481 kb on - strand, within MPMX19_06004at 160.560 kb on + strandat 160.560 kb on + strandat 160.560 kb on + strandat 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006at 160.712 kb on - strand, within MPMX19_06006

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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159,150 + MPMX19_06004 0.21 -1.6
159,150 + MPMX19_06004 0.21 +0.4
159,150 + MPMX19_06004 0.21 -1.9
159,150 + MPMX19_06004 0.21 -1.6
159,150 + MPMX19_06004 0.21 -1.0
159,150 + MPMX19_06004 0.21 +0.9
159,481 - MPMX19_06004 0.58 -2.2
160,560 + -1.1
160,560 + -0.3
160,560 + -0.1
160,712 - MPMX19_06006 0.37 -1.0
160,712 - MPMX19_06006 0.37 -0.4
160,712 - MPMX19_06006 0.37 -0.6
160,712 - MPMX19_06006 0.37 +0.1
160,712 - MPMX19_06006 0.37 -0.7

Or see this region's nucleotide sequence