Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05852

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05851 and MPMX19_05852 are separated by 10 nucleotidesMPMX19_05852 and MPMX19_05853 overlap by 11 nucleotidesMPMX19_05853 and MPMX19_05854 overlap by 4 nucleotides MPMX19_05851: MPMX19_05851 - Putative amino-acid ABC transporter-binding protein YhdW, at 586,201 to 587,232 _05851 MPMX19_05852: MPMX19_05852 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 587,243 to 587,956 _05852 MPMX19_05853: MPMX19_05853 - Lipopolysaccharide export system ATP-binding protein LptB, at 587,946 to 588,701 _05853 MPMX19_05854: MPMX19_05854 - hypothetical protein, at 588,698 to 589,720 _05854 Position (kb) 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 586.267 kb on + strandat 586.267 kb on + strandat 586.267 kb on + strandat 586.268 kb on - strandat 586.268 kb on - strandat 586.268 kb on - strandat 586.268 kb on - strandat 586.284 kb on + strandat 586.705 kb on - strand, within MPMX19_05851at 586.867 kb on + strand, within MPMX19_05851at 586.867 kb on + strand, within MPMX19_05851at 586.867 kb on + strand, within MPMX19_05851at 586.867 kb on + strand, within MPMX19_05851at 586.867 kb on + strand, within MPMX19_05851at 586.868 kb on - strand, within MPMX19_05851at 586.868 kb on - strand, within MPMX19_05851at 586.903 kb on + strand, within MPMX19_05851at 586.903 kb on + strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.904 kb on - strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.930 kb on + strand, within MPMX19_05851at 586.931 kb on - strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.212 kb on + strandat 587.212 kb on + strandat 587.212 kb on + strandat 587.213 kb on - strandat 587.213 kb on - strandat 587.244 kb on + strandat 587.245 kb on - strandat 587.245 kb on - strandat 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.905 kb on - strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.975 kb on - strandat 587.975 kb on - strandat 587.975 kb on - strandat 587.975 kb on - strandat 588.083 kb on - strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.841 kb on + strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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586,267 + -2.5
586,267 + -1.5
586,267 + -1.1
586,268 - -1.0
586,268 - -1.4
586,268 - -1.1
586,268 - -1.9
586,284 + -1.0
586,705 - MPMX19_05851 0.49 +0.4
586,867 + MPMX19_05851 0.65 -2.3
586,867 + MPMX19_05851 0.65 -1.7
586,867 + MPMX19_05851 0.65 -0.3
586,867 + MPMX19_05851 0.65 -0.1
586,867 + MPMX19_05851 0.65 -0.5
586,868 - MPMX19_05851 0.65 -0.4
586,868 - MPMX19_05851 0.65 -1.8
586,903 + MPMX19_05851 0.68 -0.2
586,903 + MPMX19_05851 0.68 -0.7
586,904 - MPMX19_05851 0.68 -0.1
586,904 - MPMX19_05851 0.68 -0.9
586,904 - MPMX19_05851 0.68 -1.6
586,904 - MPMX19_05851 0.68 -2.0
586,904 - MPMX19_05851 0.68 -1.0
586,904 - MPMX19_05851 0.68 -1.5
586,930 + MPMX19_05851 0.71 +1.1
586,930 + MPMX19_05851 0.71 +0.5
586,930 + MPMX19_05851 0.71 +0.8
586,930 + MPMX19_05851 0.71 -1.0
586,930 + MPMX19_05851 0.71 +0.3
586,930 + MPMX19_05851 0.71 -0.6
586,930 + MPMX19_05851 0.71 -0.8
586,930 + MPMX19_05851 0.71 -0.2
586,931 - MPMX19_05851 0.71 -1.1
587,125 + MPMX19_05851 0.90 -0.4
587,125 + MPMX19_05851 0.90 -1.0
587,125 + MPMX19_05851 0.90 -0.7
587,125 + MPMX19_05851 0.90 -2.8
587,126 - MPMX19_05851 0.90 -1.1
587,126 - MPMX19_05851 0.90 -0.6
587,126 - MPMX19_05851 0.90 +0.3
587,212 + -1.2
587,212 + +0.1
587,212 + -1.0
587,213 - -0.9
587,213 - -1.1
587,244 + +0.9
587,245 - -0.5
587,245 - -0.5
587,598 + MPMX19_05852 0.50 +0.4
587,598 + MPMX19_05852 0.50 -0.9
587,598 + MPMX19_05852 0.50 -0.9
587,598 + MPMX19_05852 0.50 +0.7
587,598 + MPMX19_05852 0.50 +0.9
587,598 + MPMX19_05852 0.50 -1.8
587,598 + MPMX19_05852 0.50 -0.0
587,598 + MPMX19_05852 0.50 +2.4
587,598 + MPMX19_05852 0.50 +0.1
587,598 + MPMX19_05852 0.50 -0.3
587,599 - MPMX19_05852 0.50 -1.3
587,599 - MPMX19_05852 0.50 +0.4
587,599 - MPMX19_05852 0.50 -1.1
587,599 - MPMX19_05852 0.50 -1.6
587,599 - MPMX19_05852 0.50 -0.7
587,599 - MPMX19_05852 0.50 +0.1
587,697 + MPMX19_05852 0.64 -1.9
587,697 + MPMX19_05852 0.64 -0.1
587,697 + MPMX19_05852 0.64 -0.4
587,697 + MPMX19_05852 0.64 -0.6
587,698 - MPMX19_05852 0.64 +0.1
587,698 - MPMX19_05852 0.64 -0.6
587,698 - MPMX19_05852 0.64 -0.5
587,698 - MPMX19_05852 0.64 -2.1
587,698 - MPMX19_05852 0.64 +0.4
587,905 - +0.4
587,974 + -0.6
587,974 + -0.5
587,974 + -1.0
587,974 + +1.9
587,974 + -1.8
587,974 + -1.6
587,974 + +0.6
587,975 - +0.9
587,975 - -0.4
587,975 - -0.4
587,975 - -0.9
588,083 - MPMX19_05853 0.18 -0.7
588,253 + MPMX19_05853 0.41 +1.4
588,253 + MPMX19_05853 0.41 +0.9
588,253 + MPMX19_05853 0.41 -1.9
588,253 + MPMX19_05853 0.41 -1.7
588,254 - MPMX19_05853 0.41 +0.9
588,254 - MPMX19_05853 0.41 -0.6
588,254 - MPMX19_05853 0.41 +0.4
588,254 - MPMX19_05853 0.41 -0.7
588,254 - MPMX19_05853 0.41 -0.9
588,254 - MPMX19_05853 0.41 -0.6
588,841 + MPMX19_05854 0.14 +0.6
588,842 - MPMX19_05854 0.14 -0.9
588,842 - MPMX19_05854 0.14 -0.4
588,842 - MPMX19_05854 0.14 -0.5
588,885 + MPMX19_05854 0.18 -1.6
588,885 + MPMX19_05854 0.18 -0.6
588,885 + MPMX19_05854 0.18 +0.7
588,885 + MPMX19_05854 0.18 +1.1
588,885 + MPMX19_05854 0.18 -0.9
588,886 - MPMX19_05854 0.18 +0.1
588,886 - MPMX19_05854 0.18 +0.4
588,886 - MPMX19_05854 0.18 -0.4
588,886 - MPMX19_05854 0.18 -0.1
588,886 - MPMX19_05854 0.18 -0.6
588,886 - MPMX19_05854 0.18 -0.1
588,886 - MPMX19_05854 0.18 -0.7

Or see this region's nucleotide sequence