Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05788

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05786 and MPMX19_05787 are separated by 15 nucleotidesMPMX19_05787 and MPMX19_05788 are separated by 236 nucleotidesMPMX19_05788 and MPMX19_05789 are separated by 45 nucleotidesMPMX19_05789 and MPMX19_05790 are separated by 69 nucleotides MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267 _05786 MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750 _05787 MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823 _05788 MPMX19_05789: MPMX19_05789 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 511,869 to 512,627 _05789 MPMX19_05790: MPMX19_05790 - hypothetical protein, at 512,697 to 513,080 _05790 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1at 510.244 kb on + strandat 510.245 kb on - strandat 510.245 kb on - strandat 510.253 kb on + strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.302 kb on + strandat 510.303 kb on - strandat 510.303 kb on - strandat 510.332 kb on + strand, within MPMX19_05787at 510.333 kb on - strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.782 kb on - strandat 510.782 kb on - strandat 510.785 kb on - strandat 510.787 kb on - strandat 510.787 kb on - strandat 510.898 kb on + strandat 510.898 kb on + strandat 510.898 kb on + strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.971 kb on + strandat 510.971 kb on + strandat 510.971 kb on + strandat 510.972 kb on - strandat 510.972 kb on - strandat 510.972 kb on - strandat 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.605 kb on + strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.851 kb on + strandat 511.852 kb on - strandat 511.852 kb on - strandat 511.852 kb on - strandat 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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510,244 + -0.0
510,245 - -0.4
510,245 - -2.0
510,253 + -1.3
510,254 - -0.6
510,254 - +1.1
510,254 - -0.6
510,254 - -0.6
510,302 + -1.3
510,303 - -0.4
510,303 - -1.7
510,332 + MPMX19_05787 0.10 -0.5
510,333 - MPMX19_05787 0.11 -0.7
510,404 + MPMX19_05787 0.26 +0.9
510,404 + MPMX19_05787 0.26 -0.9
510,404 + MPMX19_05787 0.26 +0.4
510,404 + MPMX19_05787 0.26 -0.4
510,404 + MPMX19_05787 0.26 +0.2
510,405 - MPMX19_05787 0.26 -0.5
510,405 - MPMX19_05787 0.26 +0.4
510,405 - MPMX19_05787 0.26 -0.1
510,405 - MPMX19_05787 0.26 -1.0
510,405 - MPMX19_05787 0.26 -2.4
510,405 - MPMX19_05787 0.26 -0.4
510,405 - MPMX19_05787 0.26 +1.2
510,405 - MPMX19_05787 0.26 -0.7
510,405 - MPMX19_05787 0.26 -0.6
510,405 - MPMX19_05787 0.26 +0.4
510,405 - MPMX19_05787 0.26 -0.4
510,782 - -0.6
510,782 - -0.4
510,785 - -0.6
510,787 - -1.3
510,787 - -0.1
510,898 + -0.7
510,898 + -0.6
510,898 + -1.1
510,899 - -0.9
510,899 - -0.2
510,899 - -0.6
510,899 - -0.9
510,899 - -2.4
510,899 - -1.8
510,971 + +0.4
510,971 + -1.6
510,971 + -1.2
510,972 - -1.0
510,972 - -2.4
510,972 - -0.8
511,107 + MPMX19_05788 0.14 -0.3
511,107 + MPMX19_05788 0.14 -1.5
511,107 + MPMX19_05788 0.14 -0.6
511,107 + MPMX19_05788 0.14 -1.2
511,107 + MPMX19_05788 0.14 -1.1
511,107 + MPMX19_05788 0.14 -1.7
511,107 + MPMX19_05788 0.14 -1.8
511,107 + MPMX19_05788 0.14 +0.4
511,107 + MPMX19_05788 0.14 +1.1
511,107 + MPMX19_05788 0.14 -0.6
511,107 + MPMX19_05788 0.14 +0.7
511,107 + MPMX19_05788 0.14 -1.1
511,108 - MPMX19_05788 0.14 -0.9
511,108 - MPMX19_05788 0.14 -0.6
511,108 - MPMX19_05788 0.14 +0.2
511,108 - MPMX19_05788 0.14 -1.6
511,108 - MPMX19_05788 0.14 -0.6
511,108 - MPMX19_05788 0.14 +0.1
511,108 - MPMX19_05788 0.14 -1.4
511,108 - MPMX19_05788 0.14 -0.0
511,108 - MPMX19_05788 0.14 -1.5
511,108 - MPMX19_05788 0.14 -1.4
511,108 - MPMX19_05788 0.14 -0.9
511,272 + MPMX19_05788 0.34 -0.9
511,272 + MPMX19_05788 0.34 -1.0
511,272 + MPMX19_05788 0.34 -1.3
511,272 + MPMX19_05788 0.34 -0.6
511,272 + MPMX19_05788 0.34 -0.6
511,272 + MPMX19_05788 0.34 +0.1
511,272 + MPMX19_05788 0.34 -1.4
511,273 - MPMX19_05788 0.34 -1.1
511,273 - MPMX19_05788 0.34 -1.4
511,273 - MPMX19_05788 0.34 -0.5
511,273 - MPMX19_05788 0.34 -0.6
511,273 - MPMX19_05788 0.34 -0.7
511,299 + MPMX19_05788 0.37 +0.9
511,299 + MPMX19_05788 0.37 -2.3
511,299 + MPMX19_05788 0.37 -0.7
511,299 + MPMX19_05788 0.37 -0.7
511,299 + MPMX19_05788 0.37 +1.4
511,299 + MPMX19_05788 0.37 -2.9
511,299 + MPMX19_05788 0.37 +0.3
511,299 + MPMX19_05788 0.37 -2.2
511,300 - MPMX19_05788 0.37 -1.0
511,300 - MPMX19_05788 0.37 -0.9
511,300 - MPMX19_05788 0.37 +1.1
511,300 - MPMX19_05788 0.37 -0.4
511,300 - MPMX19_05788 0.37 -1.1
511,300 - MPMX19_05788 0.37 +1.2
511,300 - MPMX19_05788 0.37 -0.1
511,365 + MPMX19_05788 0.45 -2.0
511,365 + MPMX19_05788 0.45 +0.6
511,365 + MPMX19_05788 0.45 -1.6
511,365 + MPMX19_05788 0.45 -0.6
511,365 + MPMX19_05788 0.45 -0.6
511,365 + MPMX19_05788 0.45 +0.1
511,476 + MPMX19_05788 0.58 -1.0
511,476 + MPMX19_05788 0.58 -1.4
511,476 + MPMX19_05788 0.58 +0.4
511,476 + MPMX19_05788 0.58 -1.3
511,476 + MPMX19_05788 0.58 -1.2
511,476 + MPMX19_05788 0.58 -2.4
511,476 + MPMX19_05788 0.58 -0.6
511,477 - MPMX19_05788 0.59 +0.6
511,477 - MPMX19_05788 0.59 -1.1
511,477 - MPMX19_05788 0.59 -1.0
511,477 - MPMX19_05788 0.59 +0.1
511,477 - MPMX19_05788 0.59 +0.9
511,477 - MPMX19_05788 0.59 -0.9
511,477 - MPMX19_05788 0.59 -1.9
511,599 + MPMX19_05788 0.73 -0.9
511,599 + MPMX19_05788 0.73 -1.2
511,599 + MPMX19_05788 0.73 -0.6
511,599 + MPMX19_05788 0.73 -0.6
511,599 + MPMX19_05788 0.73 -1.8
511,599 + MPMX19_05788 0.73 -1.6
511,599 + MPMX19_05788 0.73 +0.1
511,599 + MPMX19_05788 0.73 -0.7
511,599 + MPMX19_05788 0.73 -0.6
511,599 + MPMX19_05788 0.73 -0.7
511,599 + MPMX19_05788 0.73 +0.0
511,599 + MPMX19_05788 0.73 -0.4
511,599 + MPMX19_05788 0.73 -0.6
511,600 - MPMX19_05788 0.73 +0.4
511,600 - MPMX19_05788 0.73 +0.1
511,600 - MPMX19_05788 0.73 -1.3
511,600 - MPMX19_05788 0.73 -0.2
511,600 - MPMX19_05788 0.73 -1.6
511,600 - MPMX19_05788 0.73 +1.4
511,600 - MPMX19_05788 0.73 -0.7
511,600 - MPMX19_05788 0.73 -1.3
511,600 - MPMX19_05788 0.73 +1.4
511,605 + MPMX19_05788 0.74 -1.5
511,606 - MPMX19_05788 0.74 -1.1
511,606 - MPMX19_05788 0.74 -0.4
511,606 - MPMX19_05788 0.74 +0.1
511,743 + -0.8
511,743 + -2.3
511,743 + -2.6
511,743 + -1.6
511,743 + +0.5
511,743 + -0.1
511,743 + -1.2
511,743 + -0.1
511,743 + -0.9
511,743 + -1.0
511,744 - -2.3
511,744 - +0.3
511,744 - -1.7
511,744 - -0.6
511,744 - -1.6
511,744 - -1.1
511,744 - -1.0
511,744 - -1.1
511,744 - -0.1
511,744 - +0.2
511,744 - -0.1
511,744 - -0.1
511,744 - +0.0
511,744 - -1.6
511,744 - -0.9
511,744 - -0.1
511,744 - -1.7
511,744 - -1.5
511,744 - +1.4
511,851 + -0.3
511,852 - -0.9
511,852 - -0.6
511,852 - -1.6
512,337 + MPMX19_05789 0.62 -2.2
512,337 + MPMX19_05789 0.62 +0.1
512,337 + MPMX19_05789 0.62 -0.3
512,337 + MPMX19_05789 0.62 -0.6
512,337 + MPMX19_05789 0.62 +0.1
512,337 + MPMX19_05789 0.62 -1.3
512,337 + MPMX19_05789 0.62 -2.1
512,337 + MPMX19_05789 0.62 -1.1
512,337 + MPMX19_05789 0.62 +0.4
512,337 + MPMX19_05789 0.62 -1.9
512,338 - MPMX19_05789 0.62 -1.4
512,338 - MPMX19_05789 0.62 -0.9
512,338 - MPMX19_05789 0.62 -2.0
512,338 - MPMX19_05789 0.62 -2.6
512,338 - MPMX19_05789 0.62 -1.5
512,338 - MPMX19_05789 0.62 -1.6
512,433 + MPMX19_05789 0.74 -0.9
512,433 + MPMX19_05789 0.74 -2.6
512,433 + MPMX19_05789 0.74 -0.5
512,433 + MPMX19_05789 0.74 -0.8
512,433 + MPMX19_05789 0.74 +1.4
512,434 - MPMX19_05789 0.74 +0.1
512,434 - MPMX19_05789 0.74 -0.9
512,434 - MPMX19_05789 0.74 -1.1
512,434 - MPMX19_05789 0.74 -2.0
512,577 + -1.9
512,577 + -1.8
512,577 + -0.5
512,577 + -2.6
512,577 + -1.7
512,577 + -0.9
512,577 + -2.3
512,577 + -0.4
512,578 - +0.4
512,578 - +0.1
512,578 - -0.9
512,578 - -0.3
512,578 - -1.6
512,578 - +0.4
512,790 + MPMX19_05790 0.24 -1.5
512,790 + MPMX19_05790 0.24 -0.6
512,790 + MPMX19_05790 0.24 -0.5
512,790 + MPMX19_05790 0.24 -0.9
512,790 + MPMX19_05790 0.24 -1.0
512,791 - MPMX19_05790 0.24 -1.8
512,791 - MPMX19_05790 0.24 -1.9
512,791 - MPMX19_05790 0.24 +1.0
512,791 - MPMX19_05790 0.24 -0.7
512,791 - MPMX19_05790 0.24 +0.3
512,791 - MPMX19_05790 0.24 +0.4
512,791 - MPMX19_05790 0.24 -1.4

Or see this region's nucleotide sequence