Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05323

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05322 and MPMX19_05323 are separated by 49 nucleotidesMPMX19_05323 and MPMX19_05324 are separated by 2 nucleotides MPMX19_05322: MPMX19_05322 - hypothetical protein, at 862,522 to 863,796 _05322 MPMX19_05323: MPMX19_05323 - hypothetical protein, at 863,846 to 864,961 _05323 MPMX19_05324: MPMX19_05324 - hypothetical protein, at 864,964 to 866,112 _05324 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.879 kb on + strand, within MPMX19_05322at 862.961 kb on - strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.356 kb on + strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.779 kb on + strandat 863.779 kb on + strandat 863.779 kb on + strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.794 kb on + strandat 863.795 kb on - strandat 863.795 kb on - strandat 863.795 kb on - strandat 863.845 kb on + strandat 863.845 kb on + strandat 863.846 kb on - strandat 863.859 kb on + strandat 863.859 kb on + strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 864.023 kb on + strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.032 kb on - strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.372 kb on - strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 865.105 kb on + strand, within MPMX19_05324at 865.105 kb on + strand, within MPMX19_05324at 865.105 kb on + strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.106 kb on - strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.117 kb on + strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.118 kb on - strand, within MPMX19_05324at 865.361 kb on - strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.432 kb on + strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.433 kb on - strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.450 kb on + strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.451 kb on - strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.612 kb on + strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.613 kb on - strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.843 kb on + strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.844 kb on - strand, within MPMX19_05324at 865.845 kb on + strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324at 865.846 kb on - strand, within MPMX19_05324

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
862,879 + MPMX19_05322 0.28 -1.6
862,961 - MPMX19_05322 0.34 +0.2
863,113 + MPMX19_05322 0.46 -0.1
863,113 + MPMX19_05322 0.46 -1.2
863,113 + MPMX19_05322 0.46 -0.3
863,113 + MPMX19_05322 0.46 +1.3
863,113 + MPMX19_05322 0.46 -0.1
863,114 - MPMX19_05322 0.46 +0.3
863,114 - MPMX19_05322 0.46 -0.7
863,114 - MPMX19_05322 0.46 -0.7
863,256 + MPMX19_05322 0.58 -0.6
863,256 + MPMX19_05322 0.58 -0.4
863,257 - MPMX19_05322 0.58 +0.0
863,257 - MPMX19_05322 0.58 -1.2
863,257 - MPMX19_05322 0.58 +0.7
863,257 - MPMX19_05322 0.58 -1.5
863,257 - MPMX19_05322 0.58 -0.3
863,257 - MPMX19_05322 0.58 -1.9
863,356 + MPMX19_05322 0.65 +0.9
863,357 - MPMX19_05322 0.65 -1.0
863,357 - MPMX19_05322 0.65 -1.4
863,357 - MPMX19_05322 0.65 +0.5
863,526 + MPMX19_05322 0.79 -0.3
863,526 + MPMX19_05322 0.79 -0.7
863,526 + MPMX19_05322 0.79 -1.8
863,526 + MPMX19_05322 0.79 -0.4
863,526 + MPMX19_05322 0.79 -0.4
863,526 + MPMX19_05322 0.79 +0.7
863,527 - MPMX19_05322 0.79 +1.9
863,527 - MPMX19_05322 0.79 -1.0
863,527 - MPMX19_05322 0.79 +0.2
863,527 - MPMX19_05322 0.79 +0.5
863,779 + -2.9
863,779 + -0.2
863,779 + +0.6
863,780 - +0.2
863,780 - -1.2
863,780 - -0.3
863,780 - -1.0
863,780 - +1.0
863,794 + -0.9
863,795 - -1.2
863,795 - +0.2
863,795 - -0.5
863,845 + -0.0
863,845 + -1.1
863,846 - +0.7
863,859 + +0.2
863,859 + -0.5
863,860 - -0.6
863,860 - -1.8
863,860 - -1.5
863,860 - +0.2
863,860 - +0.5
863,860 - -0.6
863,860 - -1.6
864,023 + MPMX19_05323 0.16 -0.9
864,024 - MPMX19_05323 0.16 -2.0
864,024 - MPMX19_05323 0.16 -0.1
864,032 - MPMX19_05323 0.17 +0.3
864,371 + MPMX19_05323 0.47 -0.2
864,371 + MPMX19_05323 0.47 -1.4
864,372 - MPMX19_05323 0.47 -0.1
864,521 + MPMX19_05323 0.60 +1.3
864,521 + MPMX19_05323 0.60 -1.8
864,521 + MPMX19_05323 0.60 -0.2
864,521 + MPMX19_05323 0.60 +0.2
864,521 + MPMX19_05323 0.60 -0.5
864,521 + MPMX19_05323 0.60 +0.3
864,521 + MPMX19_05323 0.60 -0.1
864,521 + MPMX19_05323 0.60 -0.7
864,521 + MPMX19_05323 0.60 -1.2
864,521 + MPMX19_05323 0.60 -0.8
864,521 + MPMX19_05323 0.60 -0.8
864,521 + MPMX19_05323 0.60 -0.2
864,521 + MPMX19_05323 0.60 +1.3
864,521 + MPMX19_05323 0.60 -1.1
864,521 + MPMX19_05323 0.60 +0.9
864,521 + MPMX19_05323 0.60 +0.5
864,521 + MPMX19_05323 0.60 +0.3
864,522 - MPMX19_05323 0.61 -0.3
864,522 - MPMX19_05323 0.61 +0.2
864,522 - MPMX19_05323 0.61 +0.5
864,522 - MPMX19_05323 0.61 -1.4
864,522 - MPMX19_05323 0.61 -1.4
864,522 - MPMX19_05323 0.61 -0.7
865,105 + MPMX19_05324 0.12 -0.5
865,105 + MPMX19_05324 0.12 -1.2
865,105 + MPMX19_05324 0.12 -0.3
865,106 - MPMX19_05324 0.12 -1.0
865,106 - MPMX19_05324 0.12 -1.1
865,106 - MPMX19_05324 0.12 -1.2
865,117 + MPMX19_05324 0.13 +0.3
865,117 + MPMX19_05324 0.13 +0.0
865,117 + MPMX19_05324 0.13 +0.9
865,117 + MPMX19_05324 0.13 -1.4
865,117 + MPMX19_05324 0.13 -0.6
865,118 - MPMX19_05324 0.13 -0.5
865,118 - MPMX19_05324 0.13 -0.5
865,118 - MPMX19_05324 0.13 +0.3
865,118 - MPMX19_05324 0.13 -0.2
865,118 - MPMX19_05324 0.13 -1.1
865,361 - MPMX19_05324 0.35 -1.9
865,432 + MPMX19_05324 0.41 -0.8
865,432 + MPMX19_05324 0.41 +0.7
865,432 + MPMX19_05324 0.41 +1.2
865,432 + MPMX19_05324 0.41 -1.3
865,432 + MPMX19_05324 0.41 +0.5
865,433 - MPMX19_05324 0.41 -0.1
865,433 - MPMX19_05324 0.41 +0.2
865,433 - MPMX19_05324 0.41 -0.5
865,450 + MPMX19_05324 0.42 -0.3
865,450 + MPMX19_05324 0.42 -0.4
865,450 + MPMX19_05324 0.42 -0.4
865,451 - MPMX19_05324 0.42 -0.2
865,451 - MPMX19_05324 0.42 +0.5
865,451 - MPMX19_05324 0.42 +1.3
865,451 - MPMX19_05324 0.42 +1.2
865,612 + MPMX19_05324 0.56 -1.9
865,612 + MPMX19_05324 0.56 +0.9
865,612 + MPMX19_05324 0.56 +0.5
865,612 + MPMX19_05324 0.56 -1.8
865,612 + MPMX19_05324 0.56 -1.2
865,612 + MPMX19_05324 0.56 -2.3
865,613 - MPMX19_05324 0.56 -0.7
865,613 - MPMX19_05324 0.56 -0.1
865,613 - MPMX19_05324 0.56 -0.3
865,613 - MPMX19_05324 0.56 +0.1
865,613 - MPMX19_05324 0.56 -0.4
865,613 - MPMX19_05324 0.56 +1.5
865,613 - MPMX19_05324 0.56 -0.2
865,613 - MPMX19_05324 0.56 +0.3
865,613 - MPMX19_05324 0.56 +1.3
865,613 - MPMX19_05324 0.56 -0.2
865,613 - MPMX19_05324 0.56 -0.7
865,843 + MPMX19_05324 0.77 -0.3
865,843 + MPMX19_05324 0.77 -0.8
865,843 + MPMX19_05324 0.77 +0.2
865,843 + MPMX19_05324 0.77 -1.4
865,843 + MPMX19_05324 0.77 -0.5
865,843 + MPMX19_05324 0.77 +0.3
865,843 + MPMX19_05324 0.77 +0.4
865,843 + MPMX19_05324 0.77 -0.1
865,844 - MPMX19_05324 0.77 +0.0
865,844 - MPMX19_05324 0.77 +0.7
865,844 - MPMX19_05324 0.77 +0.9
865,844 - MPMX19_05324 0.77 -0.7
865,844 - MPMX19_05324 0.77 +1.2
865,844 - MPMX19_05324 0.77 -0.8
865,844 - MPMX19_05324 0.77 -3.1
865,845 + MPMX19_05324 0.77 +1.5
865,846 - MPMX19_05324 0.77 -0.5
865,846 - MPMX19_05324 0.77 -1.0
865,846 - MPMX19_05324 0.77 -0.3
865,846 - MPMX19_05324 0.77 -0.5

Or see this region's nucleotide sequence