Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05137

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05135 and MPMX19_05136 are separated by 3 nucleotidesMPMX19_05136 and MPMX19_05137 are separated by 36 nucleotidesMPMX19_05137 and MPMX19_05138 are separated by 4 nucleotides MPMX19_05135: MPMX19_05135 - hypothetical protein, at 624,275 to 626,083 _05135 MPMX19_05136: MPMX19_05136 - hypothetical protein, at 626,087 to 627,040 _05136 MPMX19_05137: MPMX19_05137 - hypothetical protein, at 627,077 to 627,751 _05137 MPMX19_05138: MPMX19_05138 - CRISPR-associated endonuclease Cas1, at 627,756 to 628,796 _05138 Position (kb) 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 626.109 kb on - strandat 626.109 kb on - strandat 626.120 kb on + strandat 626.120 kb on + strandat 626.121 kb on - strandat 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.288 kb on + strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.289 kb on - strand, within MPMX19_05136at 626.672 kb on + strand, within MPMX19_05136at 626.681 kb on + strand, within MPMX19_05136at 626.681 kb on + strand, within MPMX19_05136at 626.681 kb on + strand, within MPMX19_05136at 626.681 kb on + strand, within MPMX19_05136at 626.682 kb on - strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.696 kb on + strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.697 kb on - strand, within MPMX19_05136at 626.877 kb on + strand, within MPMX19_05136at 626.878 kb on - strand, within MPMX19_05136at 626.878 kb on - strand, within MPMX19_05136at 626.878 kb on - strand, within MPMX19_05136at 626.921 kb on + strand, within MPMX19_05136at 626.921 kb on + strand, within MPMX19_05136at 626.921 kb on + strand, within MPMX19_05136at 626.922 kb on - strand, within MPMX19_05136at 627.076 kb on + strandat 627.345 kb on - strand, within MPMX19_05137at 627.356 kb on + strand, within MPMX19_05137at 627.356 kb on + strand, within MPMX19_05137at 627.356 kb on + strand, within MPMX19_05137at 627.356 kb on + strand, within MPMX19_05137at 627.357 kb on - strand, within MPMX19_05137at 627.357 kb on - strand, within MPMX19_05137at 627.357 kb on - strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.467 kb on + strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.468 kb on - strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.587 kb on + strand, within MPMX19_05137at 627.588 kb on - strand, within MPMX19_05137at 627.588 kb on - strand, within MPMX19_05137at 627.773 kb on + strandat 627.773 kb on + strandat 627.773 kb on + strandat 627.774 kb on - strandat 627.774 kb on - strandat 627.774 kb on - strandat 627.774 kb on - strandat 627.774 kb on - strandat 627.774 kb on - strandat 627.774 kb on - strandat 628.238 kb on + strand, within MPMX19_05138at 628.239 kb on - strand, within MPMX19_05138at 628.239 kb on - strand, within MPMX19_05138at 628.282 kb on - strand, within MPMX19_05138at 628.390 kb on + strand, within MPMX19_05138at 628.391 kb on - strand, within MPMX19_05138at 628.391 kb on - strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.392 kb on + strand, within MPMX19_05138at 628.393 kb on - strand, within MPMX19_05138at 628.393 kb on - strand, within MPMX19_05138at 628.393 kb on - strand, within MPMX19_05138at 628.393 kb on - strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.397 kb on + strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.398 kb on - strand, within MPMX19_05138at 628.586 kb on + strand, within MPMX19_05138at 628.586 kb on + strand, within MPMX19_05138at 628.587 kb on - strand, within MPMX19_05138at 628.587 kb on - strand, within MPMX19_05138at 628.651 kb on - strand, within MPMX19_05138

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
626,109 - -1.2
626,109 - -2.1
626,120 + -0.8
626,120 + +0.7
626,121 - +0.1
626,288 + MPMX19_05136 0.21 +1.0
626,288 + MPMX19_05136 0.21 -0.7
626,288 + MPMX19_05136 0.21 -0.8
626,288 + MPMX19_05136 0.21 -2.1
626,288 + MPMX19_05136 0.21 -1.3
626,288 + MPMX19_05136 0.21 -1.1
626,288 + MPMX19_05136 0.21 -1.0
626,288 + MPMX19_05136 0.21 +0.5
626,288 + MPMX19_05136 0.21 -1.2
626,288 + MPMX19_05136 0.21 -1.7
626,288 + MPMX19_05136 0.21 +0.5
626,288 + MPMX19_05136 0.21 -0.3
626,288 + MPMX19_05136 0.21 -0.3
626,288 + MPMX19_05136 0.21 -1.3
626,288 + MPMX19_05136 0.21 -0.9
626,288 + MPMX19_05136 0.21 +0.4
626,288 + MPMX19_05136 0.21 -1.5
626,288 + MPMX19_05136 0.21 -0.2
626,288 + MPMX19_05136 0.21 -0.9
626,288 + MPMX19_05136 0.21 -0.8
626,288 + MPMX19_05136 0.21 -0.8
626,288 + MPMX19_05136 0.21 -0.9
626,288 + MPMX19_05136 0.21 -2.6
626,288 + MPMX19_05136 0.21 -1.2
626,288 + MPMX19_05136 0.21 -2.1
626,288 + MPMX19_05136 0.21 -3.3
626,288 + MPMX19_05136 0.21 -0.6
626,288 + MPMX19_05136 0.21 -0.7
626,288 + MPMX19_05136 0.21 -1.6
626,288 + MPMX19_05136 0.21 +1.2
626,288 + MPMX19_05136 0.21 -1.2
626,289 - MPMX19_05136 0.21 -1.1
626,289 - MPMX19_05136 0.21 -0.8
626,289 - MPMX19_05136 0.21 +0.5
626,289 - MPMX19_05136 0.21 +0.5
626,289 - MPMX19_05136 0.21 -0.2
626,289 - MPMX19_05136 0.21 -0.1
626,289 - MPMX19_05136 0.21 -1.2
626,289 - MPMX19_05136 0.21 -1.1
626,289 - MPMX19_05136 0.21 +0.5
626,289 - MPMX19_05136 0.21 -0.6
626,289 - MPMX19_05136 0.21 +0.9
626,289 - MPMX19_05136 0.21 -0.6
626,289 - MPMX19_05136 0.21 -0.6
626,289 - MPMX19_05136 0.21 +0.4
626,289 - MPMX19_05136 0.21 +0.3
626,289 - MPMX19_05136 0.21 -1.1
626,289 - MPMX19_05136 0.21 -0.5
626,289 - MPMX19_05136 0.21 -1.3
626,289 - MPMX19_05136 0.21 -1.7
626,289 - MPMX19_05136 0.21 +0.5
626,289 - MPMX19_05136 0.21 -1.3
626,672 + MPMX19_05136 0.61 -1.8
626,681 + MPMX19_05136 0.62 -0.1
626,681 + MPMX19_05136 0.62 -1.3
626,681 + MPMX19_05136 0.62 -0.8
626,681 + MPMX19_05136 0.62 +0.2
626,682 - MPMX19_05136 0.62 -0.5
626,696 + MPMX19_05136 0.64 -1.6
626,696 + MPMX19_05136 0.64 +1.5
626,696 + MPMX19_05136 0.64 -1.2
626,696 + MPMX19_05136 0.64 -1.8
626,696 + MPMX19_05136 0.64 -0.3
626,696 + MPMX19_05136 0.64 -0.5
626,696 + MPMX19_05136 0.64 +0.2
626,696 + MPMX19_05136 0.64 -2.1
626,696 + MPMX19_05136 0.64 -0.6
626,696 + MPMX19_05136 0.64 -1.2
626,696 + MPMX19_05136 0.64 -1.1
626,696 + MPMX19_05136 0.64 -1.6
626,696 + MPMX19_05136 0.64 -0.9
626,696 + MPMX19_05136 0.64 -0.2
626,697 - MPMX19_05136 0.64 -0.7
626,697 - MPMX19_05136 0.64 -0.3
626,697 - MPMX19_05136 0.64 +0.2
626,697 - MPMX19_05136 0.64 -0.6
626,697 - MPMX19_05136 0.64 -0.2
626,697 - MPMX19_05136 0.64 +0.1
626,697 - MPMX19_05136 0.64 -1.4
626,697 - MPMX19_05136 0.64 +0.4
626,697 - MPMX19_05136 0.64 +0.2
626,697 - MPMX19_05136 0.64 -0.3
626,697 - MPMX19_05136 0.64 -0.6
626,697 - MPMX19_05136 0.64 -0.5
626,697 - MPMX19_05136 0.64 -1.3
626,877 + MPMX19_05136 0.83 +1.5
626,878 - MPMX19_05136 0.83 -0.1
626,878 - MPMX19_05136 0.83 -0.6
626,878 - MPMX19_05136 0.83 -0.5
626,921 + MPMX19_05136 0.87 -0.8
626,921 + MPMX19_05136 0.87 -1.7
626,921 + MPMX19_05136 0.87 +0.4
626,922 - MPMX19_05136 0.88 -0.5
627,076 + -0.5
627,345 - MPMX19_05137 0.40 -0.1
627,356 + MPMX19_05137 0.41 -0.4
627,356 + MPMX19_05137 0.41 -0.9
627,356 + MPMX19_05137 0.41 +0.4
627,356 + MPMX19_05137 0.41 +0.1
627,357 - MPMX19_05137 0.41 -0.2
627,357 - MPMX19_05137 0.41 -0.2
627,357 - MPMX19_05137 0.41 -1.8
627,467 + MPMX19_05137 0.58 -1.1
627,467 + MPMX19_05137 0.58 +0.4
627,467 + MPMX19_05137 0.58 -1.3
627,467 + MPMX19_05137 0.58 -2.7
627,467 + MPMX19_05137 0.58 -0.2
627,467 + MPMX19_05137 0.58 -0.6
627,468 - MPMX19_05137 0.58 +0.2
627,468 - MPMX19_05137 0.58 -1.8
627,468 - MPMX19_05137 0.58 +0.0
627,468 - MPMX19_05137 0.58 +0.4
627,468 - MPMX19_05137 0.58 +1.8
627,468 - MPMX19_05137 0.58 +0.3
627,587 + MPMX19_05137 0.76 -0.5
627,587 + MPMX19_05137 0.76 -2.1
627,587 + MPMX19_05137 0.76 -1.1
627,587 + MPMX19_05137 0.76 -1.5
627,587 + MPMX19_05137 0.76 +0.1
627,587 + MPMX19_05137 0.76 -0.3
627,588 - MPMX19_05137 0.76 -0.5
627,588 - MPMX19_05137 0.76 +0.7
627,773 + -1.4
627,773 + -0.1
627,773 + -0.3
627,774 - -2.0
627,774 - -1.8
627,774 - -0.1
627,774 - +0.4
627,774 - +0.1
627,774 - +0.9
627,774 - -2.5
628,238 + MPMX19_05138 0.46 +1.8
628,239 - MPMX19_05138 0.46 -0.6
628,239 - MPMX19_05138 0.46 +0.2
628,282 - MPMX19_05138 0.51 +0.0
628,390 + MPMX19_05138 0.61 -1.1
628,391 - MPMX19_05138 0.61 -0.7
628,391 - MPMX19_05138 0.61 -0.3
628,392 + MPMX19_05138 0.61 -0.6
628,392 + MPMX19_05138 0.61 +0.9
628,392 + MPMX19_05138 0.61 -0.8
628,392 + MPMX19_05138 0.61 -1.4
628,392 + MPMX19_05138 0.61 -1.2
628,392 + MPMX19_05138 0.61 -1.3
628,392 + MPMX19_05138 0.61 -2.1
628,392 + MPMX19_05138 0.61 -1.9
628,392 + MPMX19_05138 0.61 -0.8
628,392 + MPMX19_05138 0.61 +1.5
628,392 + MPMX19_05138 0.61 -1.1
628,392 + MPMX19_05138 0.61 -0.5
628,393 - MPMX19_05138 0.61 +0.2
628,393 - MPMX19_05138 0.61 -0.9
628,393 - MPMX19_05138 0.61 +0.5
628,393 - MPMX19_05138 0.61 -1.8
628,397 + MPMX19_05138 0.62 +0.5
628,397 + MPMX19_05138 0.62 -1.3
628,397 + MPMX19_05138 0.62 -1.1
628,397 + MPMX19_05138 0.62 -1.9
628,397 + MPMX19_05138 0.62 -0.8
628,397 + MPMX19_05138 0.62 -2.1
628,397 + MPMX19_05138 0.62 -2.1
628,397 + MPMX19_05138 0.62 -1.3
628,397 + MPMX19_05138 0.62 -0.5
628,398 - MPMX19_05138 0.62 -0.6
628,398 - MPMX19_05138 0.62 -0.5
628,398 - MPMX19_05138 0.62 -1.6
628,398 - MPMX19_05138 0.62 +0.9
628,398 - MPMX19_05138 0.62 -1.9
628,398 - MPMX19_05138 0.62 -1.9
628,398 - MPMX19_05138 0.62 -0.8
628,398 - MPMX19_05138 0.62 +0.7
628,586 + MPMX19_05138 0.80 -0.1
628,586 + MPMX19_05138 0.80 -1.4
628,587 - MPMX19_05138 0.80 -2.1
628,587 - MPMX19_05138 0.80 -2.5
628,651 - MPMX19_05138 0.86 -1.1

Or see this region's nucleotide sequence