Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04673

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04672 and MPMX19_04673 are separated by 100 nucleotidesMPMX19_04673 and MPMX19_04674 are separated by 22 nucleotidesMPMX19_04674 and MPMX19_04675 are separated by 262 nucleotides MPMX19_04672: MPMX19_04672 - Aldehyde reductase YahK, at 57,511 to 58,560 _04672 MPMX19_04673: MPMX19_04673 - Purine ribonucleoside efflux pump NepI, at 58,661 to 59,878 _04673 MPMX19_04674: MPMX19_04674 - hypothetical protein, at 59,901 to 60,251 _04674 MPMX19_04675: MPMX19_04675 - HTH-type transcriptional regulator PgrR, at 60,514 to 61,407 _04675 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 57.826 kb on + strand, within MPMX19_04672at 57.826 kb on + strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.895 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.074 kb on + strand, within MPMX19_04672at 58.074 kb on + strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.492 kb on + strandat 58.492 kb on + strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.522 kb on + strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.582 kb on - strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.797 kb on + strand, within MPMX19_04673at 58.983 kb on - strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.886 kb on - strandat 59.886 kb on - strandat 59.886 kb on - strandat 59.999 kb on - strand, within MPMX19_04674at 59.999 kb on - strand, within MPMX19_04674at 59.999 kb on - strand, within MPMX19_04674at 60.005 kb on - strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.140 kb on - strand, within MPMX19_04674at 60.140 kb on - strand, within MPMX19_04674at 60.197 kb on + strand, within MPMX19_04674at 60.197 kb on + strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.243 kb on + strandat 60.360 kb on - strandat 60.443 kb on + strandat 60.444 kb on - strandat 60.444 kb on - strandat 60.472 kb on + strandat 60.480 kb on - strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.804 kb on + strand, within MPMX19_04675at 60.804 kb on + strand, within MPMX19_04675at 60.805 kb on - strand, within MPMX19_04675at 60.871 kb on + strand, within MPMX19_04675at 60.872 kb on - strand, within MPMX19_04675

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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57,826 + MPMX19_04672 0.30 -0.3
57,826 + MPMX19_04672 0.30 -0.3
57,827 - MPMX19_04672 0.30 +0.1
57,827 - MPMX19_04672 0.30 -0.8
57,827 - MPMX19_04672 0.30 -1.5
57,850 + MPMX19_04672 0.32 +0.9
57,850 + MPMX19_04672 0.32 -0.7
57,850 + MPMX19_04672 0.32 -0.4
57,850 + MPMX19_04672 0.32 -1.6
57,850 + MPMX19_04672 0.32 -0.6
57,850 + MPMX19_04672 0.32 +0.1
57,850 + MPMX19_04672 0.32 -1.4
57,850 + MPMX19_04672 0.32 -1.5
57,851 - MPMX19_04672 0.32 -0.7
57,851 - MPMX19_04672 0.32 +0.7
57,851 - MPMX19_04672 0.32 -1.2
57,851 - MPMX19_04672 0.32 +0.1
57,851 - MPMX19_04672 0.32 -0.9
57,851 - MPMX19_04672 0.32 -1.3
57,895 + MPMX19_04672 0.37 -0.9
57,925 + MPMX19_04672 0.39 -1.0
57,925 + MPMX19_04672 0.39 +0.6
57,925 + MPMX19_04672 0.39 -1.6
57,925 + MPMX19_04672 0.39 -1.3
57,925 + MPMX19_04672 0.39 +0.7
57,925 + MPMX19_04672 0.39 -1.4
57,926 - MPMX19_04672 0.40 -0.5
57,926 - MPMX19_04672 0.40 -0.7
57,926 - MPMX19_04672 0.40 -0.9
57,926 - MPMX19_04672 0.40 +1.1
57,926 - MPMX19_04672 0.40 -0.3
57,926 - MPMX19_04672 0.40 -0.9
57,926 - MPMX19_04672 0.40 -1.0
58,000 + MPMX19_04672 0.47 -0.5
58,000 + MPMX19_04672 0.47 -2.4
58,000 + MPMX19_04672 0.47 -0.4
58,000 + MPMX19_04672 0.47 -0.8
58,000 + MPMX19_04672 0.47 -0.7
58,000 + MPMX19_04672 0.47 -0.5
58,000 + MPMX19_04672 0.47 -0.8
58,001 - MPMX19_04672 0.47 -0.2
58,001 - MPMX19_04672 0.47 -0.1
58,001 - MPMX19_04672 0.47 -1.9
58,001 - MPMX19_04672 0.47 -0.3
58,074 + MPMX19_04672 0.54 -1.7
58,074 + MPMX19_04672 0.54 -1.3
58,075 - MPMX19_04672 0.54 -1.1
58,075 - MPMX19_04672 0.54 +0.1
58,075 - MPMX19_04672 0.54 +0.5
58,075 - MPMX19_04672 0.54 -0.9
58,492 + -0.3
58,492 + -0.5
58,493 - -0.5
58,493 - +1.7
58,493 - -0.1
58,493 - -0.1
58,522 + +0.3
58,523 - -0.6
58,523 - +0.5
58,582 - +0.0
58,660 + +0.6
58,660 + -1.4
58,660 + -0.9
58,660 + +0.8
58,661 - +1.3
58,661 - -0.1
58,661 - -1.4
58,661 - -0.5
58,661 - -0.0
58,661 - -1.9
58,661 - -0.7
58,661 - -0.1
58,661 - -0.9
58,661 - +1.5
58,797 + MPMX19_04673 0.11 -0.1
58,983 - MPMX19_04673 0.26 +0.1
59,372 + MPMX19_04673 0.58 -0.1
59,372 + MPMX19_04673 0.58 -1.0
59,372 + MPMX19_04673 0.58 -2.3
59,373 - MPMX19_04673 0.58 -0.8
59,373 - MPMX19_04673 0.58 -1.0
59,373 - MPMX19_04673 0.58 -1.0
59,373 - MPMX19_04673 0.58 -1.2
59,373 - MPMX19_04673 0.58 -0.1
59,373 - MPMX19_04673 0.58 -1.2
59,373 - MPMX19_04673 0.58 +0.7
59,885 + +1.5
59,885 + +0.7
59,885 + -2.1
59,885 + -0.7
59,885 + -1.2
59,886 - +1.5
59,886 - -1.1
59,886 - +0.0
59,999 - MPMX19_04674 0.28 +0.1
59,999 - MPMX19_04674 0.28 -0.7
59,999 - MPMX19_04674 0.28 +0.5
60,005 - MPMX19_04674 0.30 -1.4
60,043 + MPMX19_04674 0.40 +0.5
60,043 + MPMX19_04674 0.40 -1.6
60,043 + MPMX19_04674 0.40 +0.6
60,043 + MPMX19_04674 0.40 -1.1
60,043 + MPMX19_04674 0.40 -0.1
60,043 + MPMX19_04674 0.40 -0.2
60,044 - MPMX19_04674 0.41 -1.2
60,044 - MPMX19_04674 0.41 -0.6
60,044 - MPMX19_04674 0.41 -0.3
60,044 - MPMX19_04674 0.41 -0.4
60,046 + MPMX19_04674 0.41 -0.9
60,046 + MPMX19_04674 0.41 +2.5
60,046 + MPMX19_04674 0.41 -0.5
60,046 + MPMX19_04674 0.41 -2.1
60,046 + MPMX19_04674 0.41 -0.3
60,046 + MPMX19_04674 0.41 -0.7
60,046 + MPMX19_04674 0.41 -0.1
60,046 + MPMX19_04674 0.41 -1.4
60,046 + MPMX19_04674 0.41 -1.9
60,046 + MPMX19_04674 0.41 -2.6
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 -0.9
60,047 - MPMX19_04674 0.42 -2.0
60,047 - MPMX19_04674 0.42 -0.5
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 -1.1
60,047 - MPMX19_04674 0.42 -0.9
60,047 - MPMX19_04674 0.42 -0.7
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 -1.1
60,047 - MPMX19_04674 0.42 -0.7
60,047 - MPMX19_04674 0.42 -1.0
60,047 - MPMX19_04674 0.42 +0.1
60,047 - MPMX19_04674 0.42 -1.1
60,047 - MPMX19_04674 0.42 -1.3
60,047 - MPMX19_04674 0.42 -1.9
60,047 - MPMX19_04674 0.42 +0.7
60,115 + MPMX19_04674 0.61 -1.1
60,115 + MPMX19_04674 0.61 +2.5
60,115 + MPMX19_04674 0.61 +0.1
60,115 + MPMX19_04674 0.61 -1.3
60,116 - MPMX19_04674 0.61 -2.1
60,116 - MPMX19_04674 0.61 +1.6
60,116 - MPMX19_04674 0.61 -0.4
60,116 - MPMX19_04674 0.61 -0.7
60,140 - MPMX19_04674 0.68 +0.0
60,140 - MPMX19_04674 0.68 +1.1
60,197 + MPMX19_04674 0.84 -0.2
60,197 + MPMX19_04674 0.84 -0.3
60,198 - MPMX19_04674 0.85 -1.4
60,198 - MPMX19_04674 0.85 -0.0
60,198 - MPMX19_04674 0.85 +0.5
60,243 + +0.0
60,360 - -0.5
60,443 + -0.3
60,444 - -0.7
60,444 - -0.9
60,472 + -1.7
60,480 - -0.7
60,496 + -1.2
60,496 + -1.3
60,496 + -1.2
60,496 + -0.6
60,804 + MPMX19_04675 0.32 -0.6
60,804 + MPMX19_04675 0.32 -0.5
60,805 - MPMX19_04675 0.33 +2.1
60,871 + MPMX19_04675 0.40 +0.5
60,872 - MPMX19_04675 0.40 +0.0

Or see this region's nucleotide sequence