Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04390

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04389 and MPMX19_04390 are separated by 151 nucleotidesMPMX19_04390 and MPMX19_04391 are separated by 222 nucleotides MPMX19_04389: MPMX19_04389 - Histidinol-phosphate aminotransferase, at 754,378 to 755,469 _04389 MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517 _04390 MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957 _04391 Position (kb) 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.579 kb on + strandat 755.646 kb on + strandat 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.214 kb on - strand, within MPMX19_04390at 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.555 kb on + strandat 756.556 kb on - strandat 756.556 kb on - strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.613 kb on - strandat 756.613 kb on - strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.890 kb on + strand, within MPMX19_04391at 756.891 kb on - strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.900 kb on - strand, within MPMX19_04391at 757.053 kb on - strand, within MPMX19_04391at 757.137 kb on - strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
755,479 - +0.1
755,479 - +0.7
755,479 - -1.0
755,479 - -0.2
755,479 - -0.1
755,479 - +1.0
755,479 - -0.6
755,479 - -0.4
755,579 + +0.1
755,646 + -0.0
756,213 + MPMX19_04390 0.66 +1.1
756,213 + MPMX19_04390 0.66 -1.2
756,213 + MPMX19_04390 0.66 -0.0
756,213 + MPMX19_04390 0.66 -0.3
756,214 - MPMX19_04390 0.66 -0.6
756,552 + -0.6
756,552 + +1.3
756,552 + -0.6
756,552 + +0.1
756,552 + -0.6
756,552 + -0.8
756,553 - -0.4
756,553 - -1.8
756,553 - -2.6
756,553 - -2.2
756,553 - -0.9
756,553 - -0.8
756,553 - -1.8
756,553 - -2.2
756,555 + -1.2
756,556 - -0.9
756,556 - -0.5
756,612 + -0.1
756,612 + +0.3
756,612 + -2.0
756,612 + -1.4
756,612 + -1.2
756,613 - +0.4
756,613 - -1.6
756,616 + -2.4
756,616 + +0.1
756,616 + +1.8
756,616 + -0.9
756,616 + +0.1
756,616 + +1.6
756,616 + -1.6
756,616 + -1.7
756,616 + -1.4
756,616 + -0.8
756,616 + -0.4
756,617 - -0.9
756,617 - +0.4
756,617 - +0.1
756,617 - -0.4
756,617 - -2.8
756,617 - -1.3
756,617 - +0.5
756,617 - -1.5
756,617 - +0.8
756,617 - -0.2
756,617 - -0.0
756,618 + -1.8
756,618 + -0.0
756,618 + -1.4
756,618 + -2.4
756,618 + -0.8
756,618 + -1.2
756,618 + +0.8
756,618 + -0.0
756,618 + -1.6
756,618 + -1.8
756,618 + -0.8
756,618 + +0.5
756,618 + -1.2
756,619 - -1.2
756,619 - +1.4
756,619 - -1.0
756,619 - -0.3
756,619 - -0.2
756,619 - +0.8
756,619 - -0.5
756,619 - -0.9
756,619 - -0.8
756,890 + MPMX19_04391 0.12 -1.7
756,891 - MPMX19_04391 0.12 -1.0
756,899 + MPMX19_04391 0.13 -1.0
756,899 + MPMX19_04391 0.13 -0.9
756,899 + MPMX19_04391 0.13 -1.6
756,899 + MPMX19_04391 0.13 -1.9
756,900 - MPMX19_04391 0.13 -0.9
757,053 - MPMX19_04391 0.26 -0.0
757,137 - MPMX19_04391 0.33 -1.4
757,406 + MPMX19_04391 0.55 +1.0
757,406 + MPMX19_04391 0.55 -0.7
757,406 + MPMX19_04391 0.55 +0.6
757,406 + MPMX19_04391 0.55 -0.2
757,406 + MPMX19_04391 0.55 +0.8
757,406 + MPMX19_04391 0.55 -1.0
757,406 + MPMX19_04391 0.55 -0.8
757,407 - MPMX19_04391 0.55 -0.8
757,407 - MPMX19_04391 0.55 +0.2
757,407 - MPMX19_04391 0.55 -1.0
757,407 - MPMX19_04391 0.55 +0.7
757,407 - MPMX19_04391 0.55 -0.0
757,407 - MPMX19_04391 0.55 -1.4
757,407 - MPMX19_04391 0.55 -1.3
757,472 + MPMX19_04391 0.60 -1.4
757,472 + MPMX19_04391 0.60 -0.3
757,472 + MPMX19_04391 0.60 -0.9
757,472 + MPMX19_04391 0.60 +0.4
757,472 + MPMX19_04391 0.60 -0.0
757,472 + MPMX19_04391 0.60 -2.2
757,473 - MPMX19_04391 0.60 -1.3
757,473 - MPMX19_04391 0.60 -1.5
757,473 - MPMX19_04391 0.60 -1.3
757,473 - MPMX19_04391 0.60 -0.0
757,473 - MPMX19_04391 0.60 -0.5

Or see this region's nucleotide sequence