Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03843

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03841 and MPMX19_03842 are separated by 2 nucleotidesMPMX19_03842 and MPMX19_03843 are separated by 150 nucleotidesMPMX19_03843 and MPMX19_03844 are separated by 176 nucleotidesMPMX19_03844 and MPMX19_03845 are separated by 170 nucleotides MPMX19_03841: MPMX19_03841 - 50S ribosomal protein L13, at 78,978 to 79,442 _03841 MPMX19_03842: MPMX19_03842 - 30S ribosomal protein S9, at 79,445 to 79,933 _03842 MPMX19_03843: MPMX19_03843 - N-acetyl-gamma-glutamyl-phosphate reductase, at 80,084 to 81,160 _03843 MPMX19_03844: MPMX19_03844 - Protein YrdA, at 81,337 to 81,873 _03844 MPMX19_03845: MPMX19_03845 - Peptidoglycan-associated lipoprotein, at 82,044 to 82,655 _03845 Position (kb) 80 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1at 80.025 kb on + strandat 81.179 kb on + strandat 81.179 kb on + strandat 81.180 kb on - strandat 81.283 kb on + strandat 81.284 kb on - strandat 81.284 kb on - strandat 81.284 kb on - strandat 81.290 kb on + strandat 81.457 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.562 kb on + strand, within MPMX19_03844at 81.563 kb on - strand, within MPMX19_03844at 81.563 kb on - strand, within MPMX19_03844at 81.563 kb on - strand, within MPMX19_03844at 81.563 kb on - strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.667 kb on + strand, within MPMX19_03844at 81.668 kb on - strand, within MPMX19_03844at 81.668 kb on - strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.726 kb on + strand, within MPMX19_03844at 81.727 kb on - strand, within MPMX19_03844at 81.727 kb on - strand, within MPMX19_03844at 81.727 kb on - strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.759 kb on + strand, within MPMX19_03844at 81.777 kb on + strand, within MPMX19_03844at 81.777 kb on + strand, within MPMX19_03844at 81.820 kb on + strandat 81.820 kb on + strandat 81.820 kb on + strandat 81.822 kb on + strandat 81.822 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.881 kb on + strandat 81.881 kb on + strandat 81.881 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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80,025 + -1.7
81,179 + -0.7
81,179 + -0.7
81,180 - -1.4
81,283 + +0.1
81,284 - +0.3
81,284 - -0.6
81,284 - -0.3
81,290 + -1.4
81,457 + MPMX19_03844 0.22 -2.3
81,562 + MPMX19_03844 0.42 -1.4
81,562 + MPMX19_03844 0.42 -1.6
81,562 + MPMX19_03844 0.42 -0.2
81,562 + MPMX19_03844 0.42 -1.3
81,562 + MPMX19_03844 0.42 -1.4
81,562 + MPMX19_03844 0.42 -2.3
81,562 + MPMX19_03844 0.42 -0.9
81,562 + MPMX19_03844 0.42 -1.3
81,562 + MPMX19_03844 0.42 +0.6
81,562 + MPMX19_03844 0.42 +0.1
81,562 + MPMX19_03844 0.42 -2.6
81,562 + MPMX19_03844 0.42 -0.7
81,562 + MPMX19_03844 0.42 -0.9
81,562 + MPMX19_03844 0.42 +0.1
81,562 + MPMX19_03844 0.42 -2.3
81,563 - MPMX19_03844 0.42 -1.6
81,563 - MPMX19_03844 0.42 -1.7
81,563 - MPMX19_03844 0.42 +0.3
81,563 - MPMX19_03844 0.42 -0.5
81,667 + MPMX19_03844 0.61 -0.6
81,667 + MPMX19_03844 0.61 -0.5
81,667 + MPMX19_03844 0.61 +0.2
81,667 + MPMX19_03844 0.61 +0.7
81,667 + MPMX19_03844 0.61 -0.3
81,667 + MPMX19_03844 0.61 -1.4
81,667 + MPMX19_03844 0.61 -0.3
81,667 + MPMX19_03844 0.61 +0.8
81,667 + MPMX19_03844 0.61 -1.1
81,667 + MPMX19_03844 0.61 +0.1
81,667 + MPMX19_03844 0.61 -2.3
81,667 + MPMX19_03844 0.61 -1.4
81,668 - MPMX19_03844 0.62 -1.9
81,668 - MPMX19_03844 0.62 +0.5
81,726 + MPMX19_03844 0.72 -2.2
81,726 + MPMX19_03844 0.72 +0.1
81,726 + MPMX19_03844 0.72 -2.6
81,726 + MPMX19_03844 0.72 +0.8
81,726 + MPMX19_03844 0.72 -0.9
81,726 + MPMX19_03844 0.72 -0.6
81,726 + MPMX19_03844 0.72 -1.9
81,726 + MPMX19_03844 0.72 -3.0
81,726 + MPMX19_03844 0.72 -0.4
81,726 + MPMX19_03844 0.72 -1.5
81,726 + MPMX19_03844 0.72 -2.3
81,726 + MPMX19_03844 0.72 -1.5
81,727 - MPMX19_03844 0.73 -1.1
81,727 - MPMX19_03844 0.73 -1.0
81,727 - MPMX19_03844 0.73 -1.1
81,759 + MPMX19_03844 0.79 -0.8
81,759 + MPMX19_03844 0.79 -0.4
81,759 + MPMX19_03844 0.79 -0.6
81,759 + MPMX19_03844 0.79 -0.8
81,759 + MPMX19_03844 0.79 -1.7
81,759 + MPMX19_03844 0.79 -1.2
81,759 + MPMX19_03844 0.79 +0.1
81,759 + MPMX19_03844 0.79 -1.3
81,777 + MPMX19_03844 0.82 -0.9
81,777 + MPMX19_03844 0.82 +0.1
81,820 + -0.3
81,820 + -1.2
81,820 + -1.6
81,822 + -1.3
81,822 + +0.1
81,856 + -1.8
81,856 + -1.2
81,856 + +0.7
81,856 + -0.7
81,871 + -0.2
81,871 + +0.5
81,871 + -0.8
81,871 + -1.2
81,871 + +0.4
81,871 + -1.5
81,871 + -0.8
81,871 + -1.7
81,871 + -0.2
81,871 + +0.5
81,871 + -1.2
81,881 + -0.4
81,881 + -1.9
81,881 + -1.4
81,986 + +0.2
81,986 + -2.3
81,986 + -0.9
81,986 + -0.5
81,986 + +0.5

Or see this region's nucleotide sequence