Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03518 and MPMX19_03519 are separated by 176 nucleotides MPMX19_03519 and MPMX19_03520 are separated by 155 nucleotides MPMX19_03520 and MPMX19_03521 are separated by 173 nucleotides MPMX19_03521 and MPMX19_03522 are separated by 88 nucleotides
MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020
_03518
MPMX19_03519: MPMX19_03519 - Hydrogenase maturation factor HybF, at 938,197 to 938,439
_03519
MPMX19_03520: MPMX19_03520 - Hydrogen peroxide-inducible genes activator, at 938,595 to 939,494
_03520
MPMX19_03521: MPMX19_03521 - Glutathione S-transferase GST-4.5, at 939,668 to 940,279
_03521
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.949 kb on + strand at 938.013 kb on - strand at 938.013 kb on - strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.313 kb on - strand, within MPMX19_03519 at 938.443 kb on + strand at 938.443 kb on + strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.460 kb on - strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.084 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.501 kb on - strand at 939.501 kb on - strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.723 kb on + strand at 939.724 kb on - strand at 939.724 kb on - strand at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 940.057 kb on + strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 937,601 + MPMX19_03518 0.81 -2.2 937,601 + MPMX19_03518 0.81 +0.4 937,601 + MPMX19_03518 0.81 -1.2 937,601 + MPMX19_03518 0.81 -0.6 937,602 - MPMX19_03518 0.81 -0.4 937,602 - MPMX19_03518 0.81 -1.2 937,602 - MPMX19_03518 0.81 +0.1 937,602 - MPMX19_03518 0.81 +0.8 937,664 + MPMX19_03518 0.84 -1.3 937,664 + MPMX19_03518 0.84 -1.1 937,664 + MPMX19_03518 0.84 -0.6 937,665 - MPMX19_03518 0.84 -0.3 937,665 - MPMX19_03518 0.84 -0.7 937,665 - MPMX19_03518 0.84 +1.4 937,665 - MPMX19_03518 0.84 +0.7 937,665 - MPMX19_03518 0.84 -1.8 937,665 - MPMX19_03518 0.84 -0.9 937,665 - MPMX19_03518 0.84 -0.5 937,796 + MPMX19_03518 0.90 -2.2 937,796 + MPMX19_03518 0.90 -1.2 937,796 + MPMX19_03518 0.90 -1.4 937,796 + MPMX19_03518 0.90 -2.2 937,796 + MPMX19_03518 0.90 -1.1 937,796 + MPMX19_03518 0.90 -0.1 937,796 + MPMX19_03518 0.90 +0.4 937,796 + MPMX19_03518 0.90 +0.8 937,796 + MPMX19_03518 0.90 -0.7 937,797 - MPMX19_03518 0.90 +0.6 937,797 - MPMX19_03518 0.90 -1.1 937,797 - MPMX19_03518 0.90 +1.1 937,797 - MPMX19_03518 0.90 -0.9 937,797 - MPMX19_03518 0.90 +0.1 937,797 - MPMX19_03518 0.90 -1.4 937,797 - MPMX19_03518 0.90 -1.0 937,797 - MPMX19_03518 0.90 -0.2 937,797 - MPMX19_03518 0.90 +0.3 937,797 - MPMX19_03518 0.90 -0.8 937,797 - MPMX19_03518 0.90 -1.4 937,797 - MPMX19_03518 0.90 +0.1 937,797 - MPMX19_03518 0.90 +0.7 937,797 - MPMX19_03518 0.90 -1.1 937,798 + MPMX19_03518 0.90 +0.8 937,798 + MPMX19_03518 0.90 -1.6 937,798 + MPMX19_03518 0.90 -1.8 937,798 + MPMX19_03518 0.90 +0.2 937,798 + MPMX19_03518 0.90 +0.6 937,798 + MPMX19_03518 0.90 -0.2 937,799 - MPMX19_03518 0.90 -0.2 937,799 - MPMX19_03518 0.90 +0.4 937,799 - MPMX19_03518 0.90 +1.0 937,799 - MPMX19_03518 0.90 -0.7 937,799 - MPMX19_03518 0.90 -0.5 937,799 - MPMX19_03518 0.90 +1.0 937,799 - MPMX19_03518 0.90 -0.1 937,805 + -0.3 937,805 + -0.2 937,805 + -0.9 937,805 + -0.1 937,806 - -1.1 937,806 - -0.6 937,806 - -1.3 937,806 - -0.2 937,806 - -1.8 937,806 - -0.8 937,878 - -0.1 937,878 - -0.9 937,883 + -1.3 937,883 + -1.9 937,883 + -0.2 937,884 - -1.9 937,884 - -1.1 937,884 - -0.3 937,884 - -0.6 937,884 - -0.9 937,884 - -0.4 937,884 - -1.6 937,934 + -0.7 937,934 + -2.2 937,934 + +1.1 937,934 + -0.6 937,934 + -0.2 937,935 - -1.0 937,935 - -1.1 937,935 - -0.6 937,935 - -0.0 937,935 - -1.0 937,935 - -1.8 937,949 + -1.3 938,013 - -3.3 938,013 - -1.0 938,065 + -0.8 938,065 + -1.2 938,065 + -1.7 938,065 + -2.2 938,065 + -2.0 938,065 + -1.4 938,065 + -0.6 938,065 + -0.4 938,065 + -0.2 938,065 + +0.4 938,065 + -0.8 938,065 + +0.6 938,123 - -1.5 938,123 - -1.2 938,123 - -2.6 938,313 - MPMX19_03519 0.48 -0.6 938,443 + +0.6 938,443 + -1.3 938,444 - -1.4 938,444 - -1.6 938,444 - -1.1 938,459 + -2.2 938,459 + -1.6 938,459 + -1.3 938,460 - -0.5 938,508 + -1.3 938,508 + -1.3 938,508 + -1.6 938,508 + -1.4 938,508 + +0.8 938,508 + -0.6 938,508 + -2.3 938,508 + -0.7 938,508 + -1.1 938,508 + +1.0 938,508 + -0.7 938,508 + -0.1 938,508 + -1.0 938,508 + -2.9 938,508 + -0.5 938,509 - -1.0 938,509 - -0.0 938,509 - -1.4 938,509 - -0.9 938,509 - +0.5 938,509 - -0.7 938,509 - +2.2 938,509 - +0.6 938,509 - -0.6 938,509 - -0.6 938,509 - -0.6 938,509 - -2.1 938,509 - -1.2 938,509 - -0.0 938,509 - -0.1 938,547 + -1.8 938,547 + -0.2 938,547 + -0.8 938,548 - -1.3 938,548 - -2.2 938,548 - -2.1 938,548 - -1.3 938,548 - +0.7 938,548 - -2.5 938,548 - -1.8 938,548 - -0.9 938,814 + MPMX19_03520 0.24 -0.6 938,814 + MPMX19_03520 0.24 -1.5 938,814 + MPMX19_03520 0.24 -0.2 938,814 + MPMX19_03520 0.24 +0.2 938,815 - MPMX19_03520 0.24 -0.1 938,815 - MPMX19_03520 0.24 -0.8 939,027 + MPMX19_03520 0.48 -0.0 939,027 + MPMX19_03520 0.48 -0.8 939,027 + MPMX19_03520 0.48 -1.8 939,027 + MPMX19_03520 0.48 -0.4 939,027 + MPMX19_03520 0.48 -1.1 939,027 + MPMX19_03520 0.48 -0.5 939,028 - MPMX19_03520 0.48 -0.9 939,028 - MPMX19_03520 0.48 +1.1 939,028 - MPMX19_03520 0.48 +2.4 939,028 - MPMX19_03520 0.48 -1.0 939,028 - MPMX19_03520 0.48 -2.3 939,028 - MPMX19_03520 0.48 +0.2 939,028 - MPMX19_03520 0.48 -1.3 939,073 - MPMX19_03520 0.53 -0.6 939,073 - MPMX19_03520 0.53 -0.8 939,084 + MPMX19_03520 0.54 -1.2 939,293 + MPMX19_03520 0.78 -1.0 939,293 + MPMX19_03520 0.78 -1.0 939,500 + -2.1 939,500 + -1.6 939,500 + -0.8 939,500 + +0.4 939,500 + -2.4 939,500 + -0.2 939,501 - +0.2 939,501 - +0.8 939,510 + -0.2 939,510 + -0.4 939,510 + -0.8 939,511 - -0.6 939,511 - +1.0 939,511 - +0.1 939,512 + -1.8 939,512 + -0.9 939,512 + -0.3 939,512 + -0.6 939,512 + -0.3 939,512 + -0.7 939,512 + -0.2 939,512 + -1.6 939,512 + -1.4 939,512 + +0.4 939,512 + -0.8 939,512 + -0.8 939,512 + -0.7 939,512 + -1.4 939,512 + -0.1 939,512 + -0.2 939,512 + -0.6 939,512 + -1.6 939,512 + +0.6 939,512 + -0.7 939,512 + -2.4 939,512 + -1.2 939,513 - -0.3 939,513 - -0.8 939,513 - -1.9 939,513 - -0.9 939,513 - -1.4 939,513 - +0.1 939,513 - -0.4 939,513 - -1.9 939,513 - +1.2 939,513 - +0.4 939,513 - -0.8 939,513 - -1.9 939,513 - -0.4 939,513 - -1.5 939,513 - -1.4 939,513 - -0.6 939,513 - -0.8 939,513 - -0.4 939,513 - -0.2 939,513 - +0.4 939,513 - -2.4 939,513 - +0.8 939,513 - -2.1 939,513 - -0.5 939,513 - -2.0 939,513 - +0.4 939,513 - -0.8 939,513 - -0.9 939,677 + +0.4 939,677 + -1.1 939,677 + -0.3 939,677 + -0.6 939,677 + -0.0 939,677 + -1.0 939,677 + +0.1 939,678 - -0.3 939,678 - -1.1 939,678 - -1.5 939,678 - -1.1 939,678 - -1.2 939,678 - -0.4 939,678 - -0.8 939,678 - -2.1 939,678 - -1.8 939,678 - -1.2 939,723 + -0.6 939,724 - +0.0 939,724 - -2.3 939,878 + MPMX19_03521 0.34 -0.2 939,878 + MPMX19_03521 0.34 -1.3 939,878 + MPMX19_03521 0.34 -2.0 939,878 + MPMX19_03521 0.34 -0.4 939,879 - MPMX19_03521 0.34 -1.4 939,879 - MPMX19_03521 0.34 -0.5 939,980 + MPMX19_03521 0.51 -0.5 939,980 + MPMX19_03521 0.51 -0.4 940,057 + MPMX19_03521 0.64 -0.6 940,058 - MPMX19_03521 0.64 -2.2 940,058 - MPMX19_03521 0.64 -0.2 940,142 + MPMX19_03521 0.77 +0.0 940,142 + MPMX19_03521 0.77 -2.5 940,142 + MPMX19_03521 0.77 -0.8 940,142 + MPMX19_03521 0.77 -0.8 940,142 + MPMX19_03521 0.77 -0.8 940,143 - MPMX19_03521 0.78 +0.5 940,143 - MPMX19_03521 0.78 -0.6 940,143 - MPMX19_03521 0.78 -1.2 940,143 - MPMX19_03521 0.78 -1.0 940,143 - MPMX19_03521 0.78 -1.0 940,143 - MPMX19_03521 0.78 -1.3 940,143 - MPMX19_03521 0.78 +1.8 940,143 - MPMX19_03521 0.78 +0.2 940,148 + MPMX19_03521 0.78 -1.0 940,148 + MPMX19_03521 0.78 -0.5 940,148 + MPMX19_03521 0.78 -1.4 940,148 + MPMX19_03521 0.78 -0.1 940,148 + MPMX19_03521 0.78 -0.2 940,148 + MPMX19_03521 0.78 -3.1 940,149 - MPMX19_03521 0.79 -2.6 940,149 - MPMX19_03521 0.79 -0.7 940,149 - MPMX19_03521 0.79 +0.1 940,149 - MPMX19_03521 0.79 -1.5 940,149 - MPMX19_03521 0.79 +0.2 940,149 - MPMX19_03521 0.79 +0.1 940,149 - MPMX19_03521 0.79 +4.0 940,149 - MPMX19_03521 0.79 -0.2 940,149 - MPMX19_03521 0.79 -0.3 940,251 + -1.4
Or see this region's nucleotide sequence