Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03330

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03329 and MPMX19_03330 are separated by 606 nucleotidesMPMX19_03330 and MPMX19_03331 are separated by 17 nucleotidesMPMX19_03331 and MPMX19_03332 overlap by 4 nucleotides MPMX19_03329: MPMX19_03329 - hypothetical protein, at 679,475 to 679,906 _03329 MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845 _03330 MPMX19_03331: MPMX19_03331 - hypothetical protein, at 683,863 to 684,597 _03331 MPMX19_03332: MPMX19_03332 - hypothetical protein, at 684,594 to 687,026 _03332 Position (kb) 680 681 682 683 684Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 679.728 kb on + strand, within MPMX19_03329at 679.729 kb on - strand, within MPMX19_03329at 679.729 kb on - strand, within MPMX19_03329at 679.831 kb on + strand, within MPMX19_03329at 679.832 kb on - strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.938 kb on - strandat 679.938 kb on - strandat 679.938 kb on - strandat 679.959 kb on + strandat 679.960 kb on - strandat 679.960 kb on - strandat 680.039 kb on - strandat 680.065 kb on + strandat 680.065 kb on + strandat 680.065 kb on + strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.102 kb on + strandat 680.103 kb on - strandat 680.273 kb on - strandat 680.333 kb on - strandat 680.376 kb on + strandat 680.377 kb on - strandat 680.377 kb on - strandat 680.810 kb on + strandat 680.810 kb on + strandat 680.811 kb on - strandat 680.811 kb on - strandat 680.811 kb on - strandat 680.882 kb on + strand, within MPMX19_03330at 680.882 kb on + strand, within MPMX19_03330at 680.882 kb on + strand, within MPMX19_03330at 680.883 kb on - strand, within MPMX19_03330at 680.883 kb on - strand, within MPMX19_03330at 680.883 kb on - strand, within MPMX19_03330at 680.883 kb on - strand, within MPMX19_03330at 680.933 kb on + strand, within MPMX19_03330at 680.933 kb on + strand, within MPMX19_03330at 680.933 kb on + strand, within MPMX19_03330at 680.934 kb on - strand, within MPMX19_03330at 680.934 kb on - strand, within MPMX19_03330at 681.305 kb on + strand, within MPMX19_03330at 681.305 kb on + strand, within MPMX19_03330at 681.305 kb on + strand, within MPMX19_03330at 681.305 kb on + strand, within MPMX19_03330at 681.305 kb on + strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.306 kb on - strand, within MPMX19_03330at 681.307 kb on + strand, within MPMX19_03330at 681.308 kb on - strand, within MPMX19_03330at 681.308 kb on - strand, within MPMX19_03330at 681.308 kb on - strand, within MPMX19_03330at 681.308 kb on - strand, within MPMX19_03330at 681.308 kb on - strand, within MPMX19_03330at 681.383 kb on + strand, within MPMX19_03330at 681.383 kb on + strand, within MPMX19_03330at 681.384 kb on - strand, within MPMX19_03330at 681.384 kb on - strand, within MPMX19_03330at 681.384 kb on - strand, within MPMX19_03330at 681.425 kb on + strand, within MPMX19_03330at 681.425 kb on + strand, within MPMX19_03330at 681.425 kb on + strand, within MPMX19_03330at 681.425 kb on + strand, within MPMX19_03330at 681.426 kb on - strand, within MPMX19_03330at 681.426 kb on - strand, within MPMX19_03330at 681.426 kb on - strand, within MPMX19_03330at 681.431 kb on + strand, within MPMX19_03330at 681.432 kb on - strand, within MPMX19_03330at 681.432 kb on - strand, within MPMX19_03330at 681.584 kb on + strand, within MPMX19_03330at 681.584 kb on + strand, within MPMX19_03330at 681.584 kb on + strand, within MPMX19_03330at 681.584 kb on + strand, within MPMX19_03330at 681.585 kb on - strand, within MPMX19_03330at 681.689 kb on + strand, within MPMX19_03330at 681.690 kb on - strand, within MPMX19_03330at 681.690 kb on - strand, within MPMX19_03330at 681.962 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.971 kb on + strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 681.972 kb on - strand, within MPMX19_03330at 682.333 kb on - strand, within MPMX19_03330at 682.350 kb on + strand, within MPMX19_03330at 682.351 kb on - strand, within MPMX19_03330at 683.450 kb on + strand, within MPMX19_03330at 683.451 kb on - strand, within MPMX19_03330at 683.451 kb on - strand, within MPMX19_03330at 683.642 kb on + strandat 683.643 kb on - strandat 683.864 kb on + strandat 683.864 kb on + strandat 683.865 kb on - strandat 683.946 kb on + strand, within MPMX19_03331at 684.069 kb on + strand, within MPMX19_03331at 684.069 kb on + strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.830 kb on - strandat 684.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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679,728 + MPMX19_03329 0.59 -1.3
679,729 - MPMX19_03329 0.59 +0.8
679,729 - MPMX19_03329 0.59 -0.8
679,831 + MPMX19_03329 0.82 -1.1
679,832 - MPMX19_03329 0.83 +1.8
679,833 + MPMX19_03329 0.83 +0.8
679,833 + MPMX19_03329 0.83 +0.0
679,833 + MPMX19_03329 0.83 -1.4
679,834 - MPMX19_03329 0.83 -0.8
679,834 - MPMX19_03329 0.83 +0.5
679,834 - MPMX19_03329 0.83 -1.1
679,938 - +0.8
679,938 - -0.8
679,938 - +1.4
679,959 + +1.4
679,960 - -0.3
679,960 - -0.9
680,039 - +0.8
680,065 + -0.6
680,065 + -2.5
680,065 + -1.5
680,066 - -0.9
680,066 - -0.6
680,066 - -1.1
680,066 - -0.9
680,066 - -0.6
680,102 + -1.1
680,103 - -0.2
680,273 - -1.4
680,333 - -0.2
680,376 + -1.2
680,377 - -1.8
680,377 - +0.6
680,810 + -1.3
680,810 + -0.7
680,811 - -2.8
680,811 - -1.5
680,811 - -1.1
680,882 + MPMX19_03330 0.11 -1.1
680,882 + MPMX19_03330 0.11 -0.3
680,882 + MPMX19_03330 0.11 -1.7
680,883 - MPMX19_03330 0.11 +0.8
680,883 - MPMX19_03330 0.11 -1.8
680,883 - MPMX19_03330 0.11 -0.8
680,883 - MPMX19_03330 0.11 -0.2
680,933 + MPMX19_03330 0.13 +0.4
680,933 + MPMX19_03330 0.13 -1.4
680,933 + MPMX19_03330 0.13 -0.9
680,934 - MPMX19_03330 0.13 -1.1
680,934 - MPMX19_03330 0.13 -0.6
681,305 + MPMX19_03330 0.24 -0.4
681,305 + MPMX19_03330 0.24 -3.0
681,305 + MPMX19_03330 0.24 +0.4
681,305 + MPMX19_03330 0.24 -1.9
681,305 + MPMX19_03330 0.24 -1.2
681,306 - MPMX19_03330 0.24 -0.4
681,306 - MPMX19_03330 0.24 -0.1
681,306 - MPMX19_03330 0.24 -0.9
681,306 - MPMX19_03330 0.24 -1.6
681,306 - MPMX19_03330 0.24 -0.1
681,306 - MPMX19_03330 0.24 -0.8
681,306 - MPMX19_03330 0.24 -2.5
681,306 - MPMX19_03330 0.24 -1.3
681,306 - MPMX19_03330 0.24 +0.4
681,307 + MPMX19_03330 0.24 -0.7
681,308 - MPMX19_03330 0.24 -0.9
681,308 - MPMX19_03330 0.24 -0.4
681,308 - MPMX19_03330 0.24 -2.2
681,308 - MPMX19_03330 0.24 -2.0
681,308 - MPMX19_03330 0.24 -1.6
681,383 + MPMX19_03330 0.26 -0.0
681,383 + MPMX19_03330 0.26 +0.1
681,384 - MPMX19_03330 0.26 -0.0
681,384 - MPMX19_03330 0.26 +1.1
681,384 - MPMX19_03330 0.26 -1.5
681,425 + MPMX19_03330 0.27 -0.5
681,425 + MPMX19_03330 0.27 -1.5
681,425 + MPMX19_03330 0.27 +0.9
681,425 + MPMX19_03330 0.27 -1.6
681,426 - MPMX19_03330 0.27 -0.8
681,426 - MPMX19_03330 0.27 -0.5
681,426 - MPMX19_03330 0.27 -2.3
681,431 + MPMX19_03330 0.28 -1.9
681,432 - MPMX19_03330 0.28 -1.1
681,432 - MPMX19_03330 0.28 -1.7
681,584 + MPMX19_03330 0.32 -1.1
681,584 + MPMX19_03330 0.32 +0.8
681,584 + MPMX19_03330 0.32 -0.6
681,584 + MPMX19_03330 0.32 -2.2
681,585 - MPMX19_03330 0.32 -1.1
681,689 + MPMX19_03330 0.35 -0.6
681,690 - MPMX19_03330 0.35 -2.0
681,690 - MPMX19_03330 0.35 -0.1
681,962 + MPMX19_03330 0.43 +0.1
681,971 + MPMX19_03330 0.44 +0.2
681,971 + MPMX19_03330 0.44 -0.6
681,971 + MPMX19_03330 0.44 -1.9
681,971 + MPMX19_03330 0.44 -1.3
681,971 + MPMX19_03330 0.44 -0.9
681,971 + MPMX19_03330 0.44 +0.6
681,971 + MPMX19_03330 0.44 -1.1
681,971 + MPMX19_03330 0.44 -0.5
681,971 + MPMX19_03330 0.44 -0.6
681,971 + MPMX19_03330 0.44 -1.8
681,971 + MPMX19_03330 0.44 -0.4
681,971 + MPMX19_03330 0.44 -0.5
681,972 - MPMX19_03330 0.44 -0.3
681,972 - MPMX19_03330 0.44 +0.2
681,972 - MPMX19_03330 0.44 -1.2
681,972 - MPMX19_03330 0.44 +1.0
681,972 - MPMX19_03330 0.44 -0.9
681,972 - MPMX19_03330 0.44 -1.9
681,972 - MPMX19_03330 0.44 -0.9
681,972 - MPMX19_03330 0.44 -0.1
681,972 - MPMX19_03330 0.44 -1.5
681,972 - MPMX19_03330 0.44 -0.8
682,333 - MPMX19_03330 0.55 +2.1
682,350 + MPMX19_03330 0.55 +0.3
682,351 - MPMX19_03330 0.55 -1.7
683,450 + MPMX19_03330 0.88 -1.1
683,451 - MPMX19_03330 0.88 +0.4
683,451 - MPMX19_03330 0.88 -0.4
683,642 + -0.2
683,643 - -2.4
683,864 + -0.0
683,864 + -1.0
683,865 - +0.0
683,946 + MPMX19_03331 0.11 -1.2
684,069 + MPMX19_03331 0.28 -0.1
684,069 + MPMX19_03331 0.28 -0.7
684,180 - MPMX19_03331 0.43 -0.2
684,180 - MPMX19_03331 0.43 +0.9
684,180 - MPMX19_03331 0.43 -0.6
684,458 + MPMX19_03331 0.81 -0.8
684,458 + MPMX19_03331 0.81 +1.0
684,458 + MPMX19_03331 0.81 -0.4
684,459 - MPMX19_03331 0.81 +0.8
684,459 - MPMX19_03331 0.81 -1.9
684,459 - MPMX19_03331 0.81 -0.2
684,459 - MPMX19_03331 0.81 -1.0
684,459 - MPMX19_03331 0.81 +0.4
684,459 - MPMX19_03331 0.81 -0.6
684,459 - MPMX19_03331 0.81 -1.9
684,775 + -2.9
684,775 + -1.7
684,775 + -1.4
684,775 + -2.0
684,775 + -2.1
684,775 + -1.8
684,775 + +1.4
684,775 + -0.1
684,775 + -1.6
684,776 - +0.4
684,776 - -0.4
684,776 - -0.4
684,776 - -0.6
684,776 - -0.9
684,776 - +0.1
684,776 - +1.1
684,776 - -0.9
684,830 - -0.4
684,830 - +0.1

Or see this region's nucleotide sequence