Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02849

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02848 and MPMX19_02849 are separated by 49 nucleotidesMPMX19_02849 and MPMX19_02850 are separated by 116 nucleotides MPMX19_02848: MPMX19_02848 - Riboflavin transporter, at 91,011 to 91,961 _02848 MPMX19_02849: MPMX19_02849 - Phosphoglycerate kinase, at 92,011 to 92,769 _02849 MPMX19_02850: MPMX19_02850 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 92,886 to 93,908 _02850 Position (kb) 92 93Strain fitness (log2 ratio) -2 -1 0 1at 91.026 kb on - strandat 91.141 kb on - strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.521 kb on + strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.726 kb on - strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.878 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.017 kb on - strandat 92.017 kb on - strandat 92.554 kb on + strand, within MPMX19_02849at 92.788 kb on - strandat 92.788 kb on - strandat 92.893 kb on + strandat 92.894 kb on - strandat 92.894 kb on - strandat 92.950 kb on - strandat 92.950 kb on - strandat 93.031 kb on - strand, within MPMX19_02850at 93.031 kb on - strand, within MPMX19_02850at 93.730 kb on - strand, within MPMX19_02850at 93.730 kb on - strand, within MPMX19_02850

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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91,026 - -2.2
91,141 - MPMX19_02848 0.14 -0.4
91,308 + MPMX19_02848 0.31 +0.5
91,308 + MPMX19_02848 0.31 -0.5
91,308 + MPMX19_02848 0.31 -1.3
91,308 + MPMX19_02848 0.31 -0.8
91,308 + MPMX19_02848 0.31 -0.7
91,309 - MPMX19_02848 0.31 -0.9
91,309 - MPMX19_02848 0.31 -0.2
91,309 - MPMX19_02848 0.31 -0.8
91,309 - MPMX19_02848 0.31 -0.9
91,309 - MPMX19_02848 0.31 -0.7
91,347 + MPMX19_02848 0.35 -1.7
91,347 + MPMX19_02848 0.35 -2.2
91,347 + MPMX19_02848 0.35 -0.8
91,348 - MPMX19_02848 0.35 -0.2
91,348 - MPMX19_02848 0.35 +0.4
91,521 + MPMX19_02848 0.54 -0.1
91,522 - MPMX19_02848 0.54 +0.2
91,522 - MPMX19_02848 0.54 +0.0
91,587 + MPMX19_02848 0.61 -0.7
91,587 + MPMX19_02848 0.61 -1.4
91,587 + MPMX19_02848 0.61 -0.4
91,587 + MPMX19_02848 0.61 -1.2
91,587 + MPMX19_02848 0.61 -0.2
91,588 - MPMX19_02848 0.61 +1.4
91,588 - MPMX19_02848 0.61 -1.2
91,588 - MPMX19_02848 0.61 -0.4
91,588 - MPMX19_02848 0.61 -0.9
91,707 + MPMX19_02848 0.73 -0.2
91,707 + MPMX19_02848 0.73 -1.2
91,707 + MPMX19_02848 0.73 -0.4
91,707 + MPMX19_02848 0.73 -1.2
91,707 + MPMX19_02848 0.73 -1.1
91,707 + MPMX19_02848 0.73 -0.8
91,707 + MPMX19_02848 0.73 -1.1
91,708 - MPMX19_02848 0.73 -0.4
91,708 - MPMX19_02848 0.73 +1.4
91,708 - MPMX19_02848 0.73 -1.2
91,708 - MPMX19_02848 0.73 +0.2
91,726 - MPMX19_02848 0.75 -0.3
91,764 + MPMX19_02848 0.79 +0.4
91,764 + MPMX19_02848 0.79 -1.5
91,764 + MPMX19_02848 0.79 -0.4
91,764 + MPMX19_02848 0.79 +1.0
91,765 - MPMX19_02848 0.79 -1.1
91,765 - MPMX19_02848 0.79 +0.4
91,765 - MPMX19_02848 0.79 -0.4
91,765 - MPMX19_02848 0.79 -1.3
91,765 - MPMX19_02848 0.79 -0.5
91,765 - MPMX19_02848 0.79 +1.1
91,765 - MPMX19_02848 0.79 -0.3
91,765 - MPMX19_02848 0.79 -2.3
91,779 + MPMX19_02848 0.81 -0.5
91,779 + MPMX19_02848 0.81 +0.4
91,780 - MPMX19_02848 0.81 -1.1
91,780 - MPMX19_02848 0.81 -1.3
91,780 - MPMX19_02848 0.81 -0.0
91,780 - MPMX19_02848 0.81 +0.8
91,780 - MPMX19_02848 0.81 -0.8
91,878 + -0.5
92,016 + +0.4
92,016 + -0.3
92,016 + -1.1
92,016 + -2.0
92,016 + -0.6
92,016 + -1.3
92,017 - +0.4
92,017 - -0.2
92,554 + MPMX19_02849 0.72 -0.2
92,788 - +0.2
92,788 - -2.3
92,893 + -0.4
92,894 - -0.4
92,894 - -0.8
92,950 - +1.2
92,950 - +0.3
93,031 - MPMX19_02850 0.14 -0.4
93,031 - MPMX19_02850 0.14 -2.4
93,730 - MPMX19_02850 0.83 -0.5
93,730 - MPMX19_02850 0.83 +0.6

Or see this region's nucleotide sequence