Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02569

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02568 and MPMX19_02569 are separated by 187 nucleotidesMPMX19_02569 and MPMX19_02570 overlap by 4 nucleotidesMPMX19_02570 and MPMX19_02571 are separated by 62 nucleotides MPMX19_02568: MPMX19_02568 - tRNA modification GTPase MnmE, at 2,682,855 to 2,684,186 _02568 MPMX19_02569: MPMX19_02569 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 2,684,374 to 2,686,197 _02569 MPMX19_02570: MPMX19_02570 - Ribosomal RNA small subunit methyltransferase G, at 2,686,194 to 2,686,808 _02570 MPMX19_02571: MPMX19_02571 - Chromosome partitioning protein ParA, at 2,686,871 to 2,687,668 _02571 Position (kb) 2684 2685 2686 2687Strain fitness (log2 ratio) -2 -1 0 1 2at 2684.174 kb on + strandat 2684.289 kb on + strandat 2684.289 kb on + strandat 2684.311 kb on + strandat 2685.925 kb on + strand, within MPMX19_02569at 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.154 kb on + strandat 2686.269 kb on + strand, within MPMX19_02570at 2686.722 kb on + strand, within MPMX19_02570at 2686.722 kb on + strand, within MPMX19_02570at 2686.722 kb on + strand, within MPMX19_02570at 2687.072 kb on + strand, within MPMX19_02571at 2687.073 kb on - strand, within MPMX19_02571at 2687.073 kb on - strand, within MPMX19_02571

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,684,174 + -0.2
2,684,289 + -0.3
2,684,289 + -1.2
2,684,311 + +0.4
2,685,925 + MPMX19_02569 0.85 -0.1
2,686,154 + -0.7
2,686,154 + -1.1
2,686,154 + -0.7
2,686,154 + -0.2
2,686,154 + +1.9
2,686,154 + -1.3
2,686,154 + -0.6
2,686,154 + -0.1
2,686,154 + -0.5
2,686,154 + -2.5
2,686,154 + -2.1
2,686,154 + +0.1
2,686,154 + -0.9
2,686,154 + +0.5
2,686,154 + -0.7
2,686,154 + -0.9
2,686,154 + -2.1
2,686,154 + +0.3
2,686,154 + -0.1
2,686,154 + -0.8
2,686,154 + +1.3
2,686,154 + -0.6
2,686,269 + MPMX19_02570 0.12 -0.9
2,686,722 + MPMX19_02570 0.86 +0.2
2,686,722 + MPMX19_02570 0.86 -0.1
2,686,722 + MPMX19_02570 0.86 +0.3
2,687,072 + MPMX19_02571 0.25 +0.2
2,687,073 - MPMX19_02571 0.25 -0.5
2,687,073 - MPMX19_02571 0.25 +0.5

Or see this region's nucleotide sequence