Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02407

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02406 and MPMX19_02407 are separated by 226 nucleotidesMPMX19_02407 and MPMX19_02408 are separated by 66 nucleotidesMPMX19_02408 and MPMX19_02409 are separated by 26 nucleotides MPMX19_02406: MPMX19_02406 - Branched-chain-amino-acid aminotransferase, at 2,527,477 to 2,528,325 _02406 MPMX19_02407: MPMX19_02407 - hypothetical protein, at 2,528,552 to 2,528,761 _02407 MPMX19_02408: MPMX19_02408 - Succinate dehydrogenase iron-sulfur subunit, at 2,528,828 to 2,529,604 _02408 MPMX19_02409: MPMX19_02409 - Succinate dehydrogenase flavoprotein subunit, at 2,529,631 to 2,531,415 _02409 Position (kb) 2528 2529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2527.746 kb on + strand, within MPMX19_02406at 2527.747 kb on - strand, within MPMX19_02406at 2527.747 kb on - strand, within MPMX19_02406at 2527.862 kb on + strand, within MPMX19_02406at 2527.863 kb on - strand, within MPMX19_02406at 2527.924 kb on + strand, within MPMX19_02406at 2527.924 kb on + strand, within MPMX19_02406at 2527.924 kb on + strand, within MPMX19_02406at 2527.924 kb on + strand, within MPMX19_02406at 2527.924 kb on + strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.925 kb on - strand, within MPMX19_02406at 2527.967 kb on + strand, within MPMX19_02406at 2527.967 kb on + strand, within MPMX19_02406at 2527.967 kb on + strand, within MPMX19_02406at 2527.967 kb on + strand, within MPMX19_02406at 2527.968 kb on - strand, within MPMX19_02406at 2527.968 kb on - strand, within MPMX19_02406at 2527.968 kb on - strand, within MPMX19_02406at 2527.968 kb on - strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.027 kb on + strand, within MPMX19_02406at 2528.028 kb on - strand, within MPMX19_02406at 2528.028 kb on - strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.045 kb on + strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.046 kb on - strand, within MPMX19_02406at 2528.342 kb on + strandat 2528.342 kb on + strandat 2528.342 kb on + strandat 2528.342 kb on + strandat 2528.342 kb on + strandat 2528.343 kb on - strandat 2528.343 kb on - strandat 2528.343 kb on - strandat 2528.356 kb on - strandat 2528.356 kb on - strandat 2528.424 kb on + strandat 2528.424 kb on + strandat 2528.424 kb on + strandat 2528.424 kb on + strandat 2528.424 kb on + strandat 2528.425 kb on - strandat 2528.425 kb on - strandat 2528.425 kb on - strandat 2528.505 kb on - strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.546 kb on + strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.547 kb on - strandat 2528.759 kb on + strandat 2528.819 kb on + strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strandat 2529.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,527,746 + MPMX19_02406 0.32 +0.6
2,527,747 - MPMX19_02406 0.32 +0.2
2,527,747 - MPMX19_02406 0.32 -1.9
2,527,862 + MPMX19_02406 0.45 -1.0
2,527,863 - MPMX19_02406 0.45 +0.2
2,527,924 + MPMX19_02406 0.53 -0.7
2,527,924 + MPMX19_02406 0.53 +0.9
2,527,924 + MPMX19_02406 0.53 -2.2
2,527,924 + MPMX19_02406 0.53 -0.6
2,527,924 + MPMX19_02406 0.53 +0.2
2,527,925 - MPMX19_02406 0.53 +0.2
2,527,925 - MPMX19_02406 0.53 -1.4
2,527,925 - MPMX19_02406 0.53 -1.6
2,527,925 - MPMX19_02406 0.53 -0.3
2,527,925 - MPMX19_02406 0.53 +0.1
2,527,925 - MPMX19_02406 0.53 -1.1
2,527,967 + MPMX19_02406 0.58 -1.5
2,527,967 + MPMX19_02406 0.58 -2.5
2,527,967 + MPMX19_02406 0.58 -0.8
2,527,967 + MPMX19_02406 0.58 -1.3
2,527,968 - MPMX19_02406 0.58 -0.1
2,527,968 - MPMX19_02406 0.58 -0.7
2,527,968 - MPMX19_02406 0.58 -0.6
2,527,968 - MPMX19_02406 0.58 -0.5
2,528,027 + MPMX19_02406 0.65 -0.7
2,528,027 + MPMX19_02406 0.65 -0.8
2,528,027 + MPMX19_02406 0.65 -0.5
2,528,027 + MPMX19_02406 0.65 -0.3
2,528,027 + MPMX19_02406 0.65 +0.4
2,528,027 + MPMX19_02406 0.65 +0.0
2,528,027 + MPMX19_02406 0.65 -1.4
2,528,027 + MPMX19_02406 0.65 +0.2
2,528,028 - MPMX19_02406 0.65 -0.8
2,528,028 - MPMX19_02406 0.65 -0.0
2,528,045 + MPMX19_02406 0.67 -0.8
2,528,045 + MPMX19_02406 0.67 -0.2
2,528,045 + MPMX19_02406 0.67 -0.7
2,528,045 + MPMX19_02406 0.67 -0.8
2,528,045 + MPMX19_02406 0.67 +0.2
2,528,045 + MPMX19_02406 0.67 +0.6
2,528,045 + MPMX19_02406 0.67 -0.1
2,528,045 + MPMX19_02406 0.67 +1.2
2,528,045 + MPMX19_02406 0.67 -1.7
2,528,045 + MPMX19_02406 0.67 +0.7
2,528,045 + MPMX19_02406 0.67 +0.5
2,528,045 + MPMX19_02406 0.67 -2.8
2,528,045 + MPMX19_02406 0.67 +0.9
2,528,045 + MPMX19_02406 0.67 +0.0
2,528,045 + MPMX19_02406 0.67 -0.0
2,528,046 - MPMX19_02406 0.67 -1.1
2,528,046 - MPMX19_02406 0.67 -1.1
2,528,046 - MPMX19_02406 0.67 -1.3
2,528,046 - MPMX19_02406 0.67 +0.8
2,528,046 - MPMX19_02406 0.67 +0.5
2,528,046 - MPMX19_02406 0.67 +1.2
2,528,046 - MPMX19_02406 0.67 +0.7
2,528,046 - MPMX19_02406 0.67 -0.4
2,528,046 - MPMX19_02406 0.67 +1.2
2,528,046 - MPMX19_02406 0.67 -1.4
2,528,046 - MPMX19_02406 0.67 +1.9
2,528,046 - MPMX19_02406 0.67 -0.7
2,528,046 - MPMX19_02406 0.67 -3.2
2,528,046 - MPMX19_02406 0.67 +0.6
2,528,046 - MPMX19_02406 0.67 -1.0
2,528,046 - MPMX19_02406 0.67 -1.1
2,528,046 - MPMX19_02406 0.67 -1.1
2,528,046 - MPMX19_02406 0.67 -0.5
2,528,046 - MPMX19_02406 0.67 -0.5
2,528,046 - MPMX19_02406 0.67 +0.6
2,528,046 - MPMX19_02406 0.67 -0.8
2,528,046 - MPMX19_02406 0.67 -0.1
2,528,046 - MPMX19_02406 0.67 +0.2
2,528,342 + -1.8
2,528,342 + -0.8
2,528,342 + -1.0
2,528,342 + -1.1
2,528,342 + -0.1
2,528,343 - -0.5
2,528,343 - -1.4
2,528,343 - -1.1
2,528,356 - -2.0
2,528,356 - +0.2
2,528,424 + -1.2
2,528,424 + -0.9
2,528,424 + +0.3
2,528,424 + -0.7
2,528,424 + +1.5
2,528,425 - -1.0
2,528,425 - -0.7
2,528,425 - -1.5
2,528,505 - -0.1
2,528,546 + -1.5
2,528,546 + -1.8
2,528,546 + -1.0
2,528,546 + -0.4
2,528,546 + +0.7
2,528,546 + -1.2
2,528,546 + +0.6
2,528,546 + -0.1
2,528,546 + -1.4
2,528,546 + -1.1
2,528,546 + +0.5
2,528,546 + -0.8
2,528,546 + -0.9
2,528,546 + -0.5
2,528,547 - -0.5
2,528,547 - +0.5
2,528,547 - -1.0
2,528,547 - -1.0
2,528,547 - -1.1
2,528,547 - -1.2
2,528,547 - -1.5
2,528,547 - -0.1
2,528,547 - -1.7
2,528,547 - -1.1
2,528,547 - -0.4
2,528,547 - -1.7
2,528,547 - -1.0
2,528,547 - +0.4
2,528,547 - +0.5
2,528,759 + -1.0
2,528,819 + +2.0
2,529,633 - -0.5
2,529,633 - -1.3
2,529,633 - -1.1
2,529,633 - -0.1
2,529,633 - -0.8
2,529,633 - -1.3
2,529,633 - -0.1
2,529,633 - -1.7
2,529,633 - -1.0
2,529,633 - -1.0
2,529,633 - -2.2
2,529,633 - +0.2
2,529,633 - -0.7
2,529,633 - -0.1

Or see this region's nucleotide sequence