Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00117

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00115 and MPMX19_00116 are separated by 125 nucleotidesMPMX19_00116 and MPMX19_00117 are separated by 115 nucleotidesMPMX19_00117 and MPMX19_00118 are separated by 371 nucleotides MPMX19_00115: MPMX19_00115 - hypothetical protein, at 124,045 to 126,819 _00115 MPMX19_00116: MPMX19_00116 - Large-conductance mechanosensitive channel, at 126,945 to 127,418 _00116 MPMX19_00117: MPMX19_00117 - Protein translocase subunit SecA, at 127,534 to 130,269 _00117 MPMX19_00118: MPMX19_00118 - putative parvulin-type peptidyl-prolyl cis-trans isomerase, at 130,641 to 131,699 _00118 Position (kb) 127 128 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 126.843 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.855 kb on - strandat 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.228 kb on + strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.256 kb on - strand, within MPMX19_00116at 127.256 kb on - strand, within MPMX19_00116at 127.478 kb on - strandat 127.478 kb on - strandat 127.478 kb on - strandat 130.285 kb on - strandat 130.285 kb on - strandat 130.285 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.324 kb on - strandat 130.330 kb on - strandat 130.330 kb on - strandat 130.330 kb on - strandat 130.330 kb on - strandat 130.524 kb on - strandat 130.524 kb on - strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.546 kb on + strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.547 kb on - strandat 130.598 kb on + strandat 130.598 kb on + strandat 130.598 kb on + strandat 130.598 kb on + strandat 130.598 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.608 kb on + strandat 130.609 kb on - strandat 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 130.992 kb on + strand, within MPMX19_00118at 131.046 kb on + strand, within MPMX19_00118at 131.046 kb on + strand, within MPMX19_00118at 131.046 kb on + strand, within MPMX19_00118at 131.046 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.124 kb on + strand, within MPMX19_00118at 131.178 kb on + strand, within MPMX19_00118at 131.178 kb on + strand, within MPMX19_00118at 131.178 kb on + strand, within MPMX19_00118

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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126,843 - +0.5
126,843 - -0.1
126,843 - -0.0
126,843 - -0.9
126,855 - -0.1
127,180 + MPMX19_00116 0.50 +0.7
127,180 + MPMX19_00116 0.50 +4.1
127,180 + MPMX19_00116 0.50 +0.3
127,180 + MPMX19_00116 0.50 -0.8
127,180 + MPMX19_00116 0.50 -1.8
127,180 + MPMX19_00116 0.50 -0.4
127,180 + MPMX19_00116 0.50 +0.1
127,180 + MPMX19_00116 0.50 +0.2
127,181 - MPMX19_00116 0.50 -0.3
127,181 - MPMX19_00116 0.50 -1.2
127,181 - MPMX19_00116 0.50 -0.5
127,181 - MPMX19_00116 0.50 -1.7
127,181 - MPMX19_00116 0.50 -1.5
127,181 - MPMX19_00116 0.50 -0.1
127,228 + MPMX19_00116 0.60 -1.0
127,229 - MPMX19_00116 0.60 -1.2
127,229 - MPMX19_00116 0.60 -0.3
127,229 - MPMX19_00116 0.60 -1.1
127,255 + MPMX19_00116 0.65 -0.9
127,255 + MPMX19_00116 0.65 -0.3
127,255 + MPMX19_00116 0.65 -0.1
127,255 + MPMX19_00116 0.65 -0.5
127,255 + MPMX19_00116 0.65 -0.5
127,256 - MPMX19_00116 0.66 +0.6
127,256 - MPMX19_00116 0.66 -2.0
127,478 - -0.8
127,478 - +0.1
127,478 - -1.1
130,285 - -1.2
130,285 - -0.4
130,285 - -1.3
130,324 - -1.3
130,324 - -0.5
130,324 - -1.3
130,324 - +0.1
130,324 - -0.2
130,324 - -1.6
130,324 - -0.3
130,324 - -0.7
130,324 - -0.2
130,324 - -1.0
130,324 - -0.3
130,324 - -0.3
130,324 - -0.0
130,324 - +0.3
130,324 - +0.1
130,324 - -0.9
130,324 - -0.9
130,324 - -1.1
130,330 - +0.9
130,330 - -0.9
130,330 - -2.2
130,330 - -1.1
130,524 - -0.3
130,524 - -0.2
130,546 + -0.5
130,546 + +0.7
130,546 + -0.7
130,546 + -1.3
130,546 + -1.1
130,546 + -0.2
130,546 + +0.3
130,546 + -1.8
130,546 + -2.7
130,546 + -1.3
130,546 + +0.2
130,546 + +1.3
130,546 + -1.1
130,547 - +0.9
130,547 - -0.2
130,547 - -0.3
130,547 - -1.3
130,547 - +0.7
130,547 - -0.5
130,547 - +0.1
130,547 - -1.1
130,547 - -1.3
130,547 - -0.9
130,598 + -0.7
130,598 + -0.7
130,598 + -1.5
130,598 + -0.3
130,598 + -1.5
130,608 + -0.8
130,608 + -1.3
130,608 + +0.8
130,608 + -0.5
130,608 + -0.7
130,608 + +1.7
130,608 + -1.2
130,608 + -0.4
130,608 + +0.3
130,608 + -0.3
130,608 + -0.9
130,608 + -0.5
130,608 + -0.5
130,609 - +0.7
130,992 + MPMX19_00118 0.33 -0.3
130,992 + MPMX19_00118 0.33 +0.7
130,992 + MPMX19_00118 0.33 +0.1
130,992 + MPMX19_00118 0.33 -1.6
130,992 + MPMX19_00118 0.33 -1.2
130,992 + MPMX19_00118 0.33 -2.6
130,992 + MPMX19_00118 0.33 -0.7
130,992 + MPMX19_00118 0.33 -0.5
131,046 + MPMX19_00118 0.38 -0.3
131,046 + MPMX19_00118 0.38 -1.2
131,046 + MPMX19_00118 0.38 +0.9
131,046 + MPMX19_00118 0.38 -1.1
131,124 + MPMX19_00118 0.46 -0.8
131,124 + MPMX19_00118 0.46 -1.1
131,124 + MPMX19_00118 0.46 -0.5
131,124 + MPMX19_00118 0.46 +0.2
131,124 + MPMX19_00118 0.46 +0.3
131,124 + MPMX19_00118 0.46 -1.3
131,124 + MPMX19_00118 0.46 +0.9
131,178 + MPMX19_00118 0.51 -0.6
131,178 + MPMX19_00118 0.51 +0.6
131,178 + MPMX19_00118 0.51 +0.1

Or see this region's nucleotide sequence