Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15395

Experiment: Tween 20 (C), 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS15385 and A4249_RS15390 overlap by 4 nucleotidesA4249_RS15390 and A4249_RS15395 are separated by 52 nucleotidesA4249_RS15395 and A4249_RS15400 are separated by 4 nucleotides A4249_RS15385: A4249_RS15385 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 3,120,165 to 3,120,878 _RS15385 A4249_RS15390: A4249_RS15390 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,120,875 to 3,121,504 _RS15390 A4249_RS15395: A4249_RS15395 - pentapeptide repeat-containing protein, at 3,121,557 to 3,122,825 _RS15395 A4249_RS15400: A4249_RS15400 - methionine adenosyltransferase, at 3,122,830 to 3,124,035 _RS15400 Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -2 -1 0 1 2at 3121.531 kb on + strandat 3121.531 kb on + strandat 3121.532 kb on - strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3122.457 kb on + strand, within A4249_RS15395at 3122.457 kb on + strand, within A4249_RS15395at 3122.458 kb on - strand, within A4249_RS15395at 3122.458 kb on - strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.515 kb on + strand, within A4249_RS15395at 3122.516 kb on - strand, within A4249_RS15395at 3122.516 kb on - strand, within A4249_RS15395at 3122.516 kb on - strand, within A4249_RS15395at 3122.516 kb on - strand, within A4249_RS15395at 3122.516 kb on - strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.662 kb on + strand, within A4249_RS15395at 3122.663 kb on - strand, within A4249_RS15395at 3122.663 kb on - strand, within A4249_RS15395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
remove
3,121,531 + +1.0
3,121,531 + +2.0
3,121,532 - -0.1
3,121,545 + -1.8
3,121,545 + -0.2
3,121,545 + -0.1
3,121,545 + +1.2
3,121,546 - +0.1
3,121,546 - +1.5
3,121,546 - +0.5
3,121,546 - +0.2
3,122,457 + A4249_RS15395 0.71 -0.2
3,122,457 + A4249_RS15395 0.71 -1.2
3,122,458 - A4249_RS15395 0.71 -1.3
3,122,458 - A4249_RS15395 0.71 -1.7
3,122,515 + A4249_RS15395 0.75 +0.2
3,122,515 + A4249_RS15395 0.75 -0.5
3,122,515 + A4249_RS15395 0.75 +0.0
3,122,515 + A4249_RS15395 0.75 -0.8
3,122,515 + A4249_RS15395 0.75 +0.0
3,122,515 + A4249_RS15395 0.75 -0.2
3,122,515 + A4249_RS15395 0.75 +0.5
3,122,515 + A4249_RS15395 0.75 +0.0
3,122,515 + A4249_RS15395 0.75 +0.2
3,122,515 + A4249_RS15395 0.75 +0.3
3,122,516 - A4249_RS15395 0.76 -0.6
3,122,516 - A4249_RS15395 0.76 +2.4
3,122,516 - A4249_RS15395 0.76 +0.7
3,122,516 - A4249_RS15395 0.76 +0.5
3,122,516 - A4249_RS15395 0.76 -2.0
3,122,662 + A4249_RS15395 0.87 +0.3
3,122,662 + A4249_RS15395 0.87 +0.7
3,122,662 + A4249_RS15395 0.87 +0.1
3,122,662 + A4249_RS15395 0.87 -0.4
3,122,662 + A4249_RS15395 0.87 -0.0
3,122,662 + A4249_RS15395 0.87 +1.1
3,122,663 - A4249_RS15395 0.87 -2.0
3,122,663 - A4249_RS15395 0.87 -0.0

Or see this region's nucleotide sequence