Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15385 and A4249_RS15390 overlap by 4 nucleotides A4249_RS15390 and A4249_RS15395 are separated by 52 nucleotides A4249_RS15395 and A4249_RS15400 are separated by 4 nucleotides
A4249_RS15385: A4249_RS15385 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 3,120,165 to 3,120,878
_RS15385
A4249_RS15390: A4249_RS15390 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,120,875 to 3,121,504
_RS15390
A4249_RS15395: A4249_RS15395 - pentapeptide repeat-containing protein, at 3,121,557 to 3,122,825
_RS15395
A4249_RS15400: A4249_RS15400 - methionine adenosyltransferase, at 3,122,830 to 3,124,035
_RS15400
Position (kb)
3121
3122
3123 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3121.531 kb on + strand at 3121.531 kb on + strand at 3121.532 kb on - strand at 3121.545 kb on + strand at 3121.545 kb on + strand at 3121.545 kb on + strand at 3121.545 kb on + strand at 3121.546 kb on - strand at 3121.546 kb on - strand at 3121.546 kb on - strand at 3121.546 kb on - strand at 3122.457 kb on + strand, within A4249_RS15395 at 3122.457 kb on + strand, within A4249_RS15395 at 3122.458 kb on - strand, within A4249_RS15395 at 3122.458 kb on - strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.515 kb on + strand, within A4249_RS15395 at 3122.516 kb on - strand, within A4249_RS15395 at 3122.516 kb on - strand, within A4249_RS15395 at 3122.516 kb on - strand, within A4249_RS15395 at 3122.516 kb on - strand, within A4249_RS15395 at 3122.516 kb on - strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.662 kb on + strand, within A4249_RS15395 at 3122.663 kb on - strand, within A4249_RS15395 at 3122.663 kb on - strand, within A4249_RS15395
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 3,121,531 + +1.0 3,121,531 + +2.0 3,121,532 - -0.1 3,121,545 + -1.8 3,121,545 + -0.2 3,121,545 + -0.1 3,121,545 + +1.2 3,121,546 - +0.1 3,121,546 - +1.5 3,121,546 - +0.5 3,121,546 - +0.2 3,122,457 + A4249_RS15395 0.71 -0.2 3,122,457 + A4249_RS15395 0.71 -1.2 3,122,458 - A4249_RS15395 0.71 -1.3 3,122,458 - A4249_RS15395 0.71 -1.7 3,122,515 + A4249_RS15395 0.75 +0.2 3,122,515 + A4249_RS15395 0.75 -0.5 3,122,515 + A4249_RS15395 0.75 +0.0 3,122,515 + A4249_RS15395 0.75 -0.8 3,122,515 + A4249_RS15395 0.75 +0.0 3,122,515 + A4249_RS15395 0.75 -0.2 3,122,515 + A4249_RS15395 0.75 +0.5 3,122,515 + A4249_RS15395 0.75 +0.0 3,122,515 + A4249_RS15395 0.75 +0.2 3,122,515 + A4249_RS15395 0.75 +0.3 3,122,516 - A4249_RS15395 0.76 -0.6 3,122,516 - A4249_RS15395 0.76 +2.4 3,122,516 - A4249_RS15395 0.76 +0.7 3,122,516 - A4249_RS15395 0.76 +0.5 3,122,516 - A4249_RS15395 0.76 -2.0 3,122,662 + A4249_RS15395 0.87 +0.3 3,122,662 + A4249_RS15395 0.87 +0.7 3,122,662 + A4249_RS15395 0.87 +0.1 3,122,662 + A4249_RS15395 0.87 -0.4 3,122,662 + A4249_RS15395 0.87 -0.0 3,122,662 + A4249_RS15395 0.87 +1.1 3,122,663 - A4249_RS15395 0.87 -2.0 3,122,663 - A4249_RS15395 0.87 -0.0
Or see this region's nucleotide sequence